DPL0568, DPL0568 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0568
Genbank IDGQ395061
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395061
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0568_F: CAAGTTTGCTACTTTGGTCTCAATC
Primer 2DPL0568_R: TTACGCGTCTACATTTCAACACTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395061
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:82597702..82597821 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:92785003..92785124 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:7787576..7787683 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:7012123..7012237 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr8chromosomeAt_chr8:13132395..13132506 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:76183105..76183222 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:100473133..100473251 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:98095306..98095417 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:96737095..96737212 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17720supercontigscaffold17720:17372..17489 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:92910807..92910924 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017637.1chromosomeCM017637.1:102108522..102108649 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:94755213..94755324 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:100570175..100570294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:93660231..93660340 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E02chromosomeE02:10616300..10616409 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395061GQ395061Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A48.2DPL0568View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A42.1DPL0568View
3Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A41DPL0568View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A73.9DPL0568View
5TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A48.16DPL0568View
Sequence
>DPL0568 ID=DPL0568; Name=DPL0568; organism=Gossypium hirsutum; type=genetic_marker; length=110bp
CAAGTTTGCTACTTTGGTCTCAATCTAAAATGCCAATGAGTAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTGTTGAAATGT
AGACGCGTAA