DPL0542, DPL0542 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0542
Genbank IDGQ395046
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395046
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0542_F: GTTCGAAAGTCCTTACAACCCTATT
Primer 2DPL0542_R: CAAGTCAAACAACCTAGGTACATGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395046
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:58202693..58202848 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:56952999..56953146 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:51224877..51225686 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:5746469..5746596 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:8571903..8572010 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:55585667..55585822 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:57183631..57183782 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:58852860..58853015 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:58583840..58583959 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:55850891..55851046 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2334supercontigscaffold2334:46655..46802 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:57175761..57175908 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:57812746..57812889 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:58055612..58055747 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:59407016..59407159 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:57537389..57537542 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:59094711..59094866 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:46616817..46617580 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr02chromosomechr02:42235990..42236286 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:56168941..56169276 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
A01chromosomeA01:14747501..14747519 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant biotechnology journal. 2020; 18(3):707-720.
Chr02chromosomeDPL0542:15..670 .
Chr02:57016075..57017102 +		n/a
Chr9chromosomeDPL0542:15..670 .
Chr9:10246888..10248289 +		n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395046GQ395046Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A93DPL0542View
2TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A41.1DPL0542View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A93.1DPL0542View
4Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A21DPL0542View
5LMY22 x LY343, RIL (2020)A01N/A122.9DPL0542View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch15_Dt.01N/A59MON_DPL0542View
70-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A47.4DPL0542aView
80-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A49.1DPL0542bView
9CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A89.84DPL0542View
10TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A41.1DPL0542View
11MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A135.6DPL0542View
12TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A55.6dPL0542-150View
Sequence
>DPL0542 ID=DPL0542; Name=DPL0542; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
GTTCGAAAGTCCTTACAACCCTATTTAATATGTATGTATGTATGTATGTA
TGTATGTATGTATGTATGTATGTATGTATGTTTTGAAGTTATATAGCATG
TACCTAGGTTGTTTGACTTG