DPL0536, DPL0536 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0536
Genbank IDGQ395044
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395044
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0536_F: GTAGCGACTAGCAAGGTTTCGTAT
Primer 2DPL0536_R: GCAGCCTACAAGTCAACAAGAGTA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395044
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A10chromosomeA10:13262168..13262347 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
D10chromosomeD10:7642809..7642976 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018211.1chromosomeCM018211.1:12707843..12708022 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_10chromosomeD5_10:55242249..55242416 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:120689704..120689867 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_10chromosomeD10_10:56996340..56996503 +Gossypium turneri (D10) genome NSF_v1_a2
CM016623.1chromosomeCM016623.1:11157044..11157210 -Gossypium australe (G2) genome CRI_v1.1
Dt_chr11chromosomeDt_chr11:2521917..2522084 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr11chromosomeAt_chr11:55464830..55465013 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A10chromosomeA10:12634186..12634365 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D10chromosomeD10:7142852..7143019 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A10chromosomeGhir_A10:12784238..12784417 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_D10chromosomeGhir_D10:7711418..7711585 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A10chromosomeA10:12683038..12683217 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D10chromosomeD10:7323050..7323217 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A10chromosomeA10:12398747..12398930 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D10chromosomeD10:7560683..7560850 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A10chromosomeA10:13243334..13243513 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
D10chromosomeD10:7671312..7671479 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt10chromosomeDt10:7551442..7551609 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold15657supercontigscaffold15657:13192..13371 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold15464supercontigscaffold15464:121164..121331 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A10chromosomeGbar_A10:13004523..13004702 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D10chromosomeGbar_D10:7272728..7272895 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A10chromosomeA10:12821878..12822057 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017619.1chromosomeCM017619.1:12850535..12850714 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017632.1chromosomeCM017632.1:7229043..7229210 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017645.1chromosomeCM017645.1:13219499..13219666 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017658.1chromosomeCM017658.1:7434782..7434949 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017697.1chromosomeCM017697.1:13040555..13040738 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017710.1chromosomeCM017710.1:7413590..7413757 -Gossypium darwinii (AD5) genome HGS_v1.1
A10chromosomeA10:13308716..13308895 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
D10chromosomeD10:7561861..7562028 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr10chromosomeChr10:8218927..8219102 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr10chromosomeChr10:8676755..8676918 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr10chromosomeChr10:7167553..7167720 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_10chromosomeB_10:92756299..92756466 -Gossypium anomalum (B1) genome NSF_v1
Chr11chromosomeChr11:7114641..7114808 -Gossypium thurberi (D1-5) genome CRI_v1
chr11chromosomechr11:6730868..6731031 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_11chromosomeChr_11:5683566..5683729 -Gossypium harknessii (D2-2) genome ISU_v1
Chr11chromosomeChr11:6284383..6284546 -Gossypium aridum (D4) genome ISU_v1
Chr11chromosomeChr11:5063910..5064073 -Gossypium gossypioides (D6) genome ISU_v1
Chr11chromosomeChr11:6299458..6299621 -Gossypium lobatum (D7) genome ISU_v1
E10chromosomeE10:104104313..104104490 +Gossypium stocksii (E1) genome NSF_v1
F10chromosomeF10:7348465..7348672 -Gossypium longicalyx (F1) genome NSF_v1
Chr10chromosomeChr10:155558447..155558630 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr11chromosomeDPL0536:1..415 .
Chr11:7087383..7087785 -
Chr11chromosomeDPL0536:1..415 .
Chr11:9338889..9339291 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395044GQ395044Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch10_At.10N/A0MON-DPL0536View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A31.4DPL0536View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A41.57DPL0536View
Sequence
>DPL0536 ID=DPL0536; Name=DPL0536; organism=Gossypium hirsutum; type=genetic_marker; length=180bp
GTAGCGACTAGCAAGGTTTCGTATGTTGAATCCTTGGGTGGAGTAAGAAG
CCCAAAAGAACGCCATTAATGAAAGCAGTTGGAGAGATAGACAACTATAT
GTACGTATGTATGTATGTATGTATGTATGTATCATATTTCAACGTAGATA
TTGGATTACTCTTGTTGACTTGTAGGCTGC