DPL0536, DPL0536 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0536
Genbank IDGQ395044
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395044
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0536_F: GTAGCGACTAGCAAGGTTTCGTAT
Primer 2DPL0536_R: GCAGCCTACAAGTCAACAAGAGTA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395044
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A10chromosomeA10:13262168..13262347 +
D10chromosomeD10:7642809..7642976 -
CM018211.1chromosomeCM018211.1:12707843..12708022 +
D5_10chromosomeD5_10:55242249..55242416 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:120689704..120689867 +
D10_10chromosomeD10_10:56996340..56996503 +
CM016623.1chromosomeCM016623.1:11157044..11157210 -
Dt_chr11chromosomeDt_chr11:2521917..2522084 -
At_chr11chromosomeAt_chr11:55464830..55465013 -
A10chromosomeA10:12634186..12634365 +
D10chromosomeD10:7142852..7143019 -
Ghir_A10chromosomeGhir_A10:12784238..12784417 +
Ghir_D10chromosomeGhir_D10:7711418..7711585 -
A10chromosomeA10:12683038..12683217 +
D10chromosomeD10:7323050..7323217 -
A10chromosomeA10:12398747..12398930 +
D10chromosomeD10:7560683..7560850 -
A10chromosomeA10:13243334..13243513 +
D10chromosomeD10:7671312..7671479 -
Dt10chromosomeDt10:7551442..7551609 -
scaffold15657supercontigscaffold15657:13192..13371 -
scaffold15464supercontigscaffold15464:121164..121331 -
Gbar_A10chromosomeGbar_A10:13004523..13004702 +
Gbar_D10chromosomeGbar_D10:7272728..7272895 -
A10chromosomeA10:12821878..12822057 +
CM017619.1chromosomeCM017619.1:12850535..12850714 +
CM017632.1chromosomeCM017632.1:7229043..7229210 -
CM017645.1chromosomeCM017645.1:13219499..13219666 +
CM017658.1chromosomeCM017658.1:7434782..7434949 -
CM017697.1chromosomeCM017697.1:13040555..13040738 +
CM017710.1chromosomeCM017710.1:7413590..7413757 -
A10chromosomeA10:13308716..13308895 +
D10chromosomeD10:7561861..7562028 -
Chr10chromosomeChr10:8218927..8219102 -
Chr10chromosomeChr10:8676755..8676918 -
Chr10chromosomeChr10:7167553..7167720 -
B_10chromosomeB_10:92756299..92756466 -
Chr11chromosomeChr11:7114641..7114808 -
chr11chromosomechr11:6730868..6731031 -
Chr_11chromosomeChr_11:5683566..5683729 -
Chr11chromosomeChr11:6284383..6284546 -
Chr11chromosomeChr11:5063910..5064073 -
Chr11chromosomeChr11:6299458..6299621 -
E10chromosomeE10:104104313..104104490 +
F10chromosomeF10:7348465..7348672 -
Chr10chromosomeChr10:155558447..155558630 +
Chr11chromosomeDPL0536:1..415 .
Chr11:7087383..7087785 -
Chr11chromosomeDPL0536:1..415 .
Chr11:9338889..9339291 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395044GQ395044Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch10_At.10N/A0MON-DPL0536View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A31.4DPL0536View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A41.57DPL0536View
Sequence
>DPL0536 ID=DPL0536; Name=DPL0536; organism=Gossypium hirsutum; type=genetic_marker; length=180bp
GTAGCGACTAGCAAGGTTTCGTATGTTGAATCCTTGGGTGGAGTAAGAAG
CCCAAAAGAACGCCATTAATGAAAGCAGTTGGAGAGATAGACAACTATAT
GTACGTATGTATGTATGTATGTATGTATGTATCATATTTCAACGTAGATA
TTGGATTACTCTTGTTGACTTGTAGGCTGC