DPL0356, DPL0356 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0356
Genbank IDGQ394964
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394964
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0356_F: CTGTAGTTCCAGTTGCTGCTGTT
Primer 2DPL0356_R: CAGATCCTCATATGGAACACCTTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394964
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:14062559..14062752 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:12810406..12810596 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_09chromosomeKI_09:8483229..8483419 +Gossypioides kirkii genome ISU_v3n/a
CM016622.1chromosomeCM016622.1:71526248..71526444 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4379_D09supercontigscaffold4379_D09:26319..26512 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:13874591..13874784 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:29346375..29346697 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:13458871..13459064 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:13506845..13507038 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:13496014..13496207 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:14455559..14455749 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11482supercontigscaffold11482:8131..8321 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:14081525..14081715 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:15179713..15179903 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:12984092..12984285 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:12750508..12750692 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:13203598..13203794 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:14006356..14006549 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr_06chromosomeChr_06:10094337..10094515 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:15339717..15340012 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:9636837..9637009 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:63871060..63871232 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:15511121..15511293 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394964GQ394964Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A25.2DPL0356aView
2Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A121DPL0356aView
3TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A36.3DPL0356bView
4Monsanto SSR Bin Map, (2009)AD_ch23_Dt.09N/A101DPL0356bView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch23_Dt.09N/A8.9MON_DPL0356View
6Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A16DPL0356View
70-153 x sGK9708, RIL (2016)AD_ch23_Dt.09N/A47.8DPL0356View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A43.2DPL0356View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A44.2DPL0356View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A93.8DPL0356View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A79.51DPL0356View
12TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A25.16DPL0356aView
13TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A36.34DPL0356bView
Sequence
>DPL0356 ID=DPL0356; Name=DPL0356; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
CTGTAGTTCCAGTTGCTGCTGTTGCCGCTGAAGTTCCAGCTGCTGCTGCC
TCTGAAGTTCCAACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT
CGCTTAAGTTCCAATTGCTGCTGCTGTCGCTGAAGTTCCAACTGCCACTG
CTGTTGAAACTGAAGTTCCAAAAGGTGTTCCATATGAGGATCTG