DPL0300, DPL0300 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0300
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0300_orig
Source Typegenomic
Repeat Motif(ATC)10
PCR ConditionAnnealing temperature: 55
Primer 1DPL0300_F: GAAATATTGCTTGTCTGCTTCAGG
Primer 2DPL0300_R: GGGTCAAACCACGACTTTATTAGA
PolymorphismP_ DPL0300
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:47214885..47214978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:45898377..45898479 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:40739160..40739253 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:16584026..16584128 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:101749665..101749755 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:47779891..47779984 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:44186291..44186384 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:45865933..45866025 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:78091878..78091968 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:47777866..47777959 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:47240286..47240379 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:44734251..44734353 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9113supercontigscaffold9113:320..410 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10106supercontigscaffold10106:156538..156640 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:46114122..46114221 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:76497441..76497531 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:46844589..46844691 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:46914756..46914858 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:48108259..48108361 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:46339976..46340072 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:47764123..47764216 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:36263581..36263674 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:71684420..71684513 +Gossypium anomalum (B1) genome NSF_v1n/a
chr02chromosomechr02:33914780..33914879 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:30918785..30918887 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:45014171..45014267 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:33691464..33691572 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:26347627..26347720 +Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:83903924..83904014 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0300_origDPL0300_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A67.56DPL0300View
2Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A113.05DPL0300View
3AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A102DPL0300View
4DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A24.96DPL0300View
5DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A24.96DPL0300View
6TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A52.3DPL0300View
7DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A25.9DPL0300View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A76.1DPL0300View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A62.8DPL0300View
10DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A58.1DPL300View
11DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A58.1DPL300View
12CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A67.67DPL0300View
13TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A52.33DPL0300View
14MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A124.7DPL0300View
Sequence
>DPL0300 ID=DPL0300; Name=DPL0300; organism=Gossypium hirsutum; type=genetic_marker; length=103bp
GAAATATTGCTTGTCTGCTTCAGGCCCGAATGGTAGTCAGATCATCATCA
TCATCATCATCATCATCATCCCCCTTTTCTCTAATAAAGTCGTGGTTTGA
CCC