DPL0174, DPL0174 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0174
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0174_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0174_F: TTACACACCACCTCCCTTCG
Primer 2DPL0174_R: ATCGGCATCATGTACACTTCTCT
PolymorphismP_ DPL0174
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D05chromosomeD05:27218165..27218394 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A05chromosomeA05:30832157..30832406 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018219.1chromosomeCM018219.1:25647876..25648083 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018206.1chromosomeCM018206.1:29584831..29585066 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_05chromosomeD5_05:24354299..24354528 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_05chromosomeKI_05:21450232..21450424 +Gossypioides kirkii genome ISU_v3
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:30154226..30154436 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_05chromosomeD10_05:35997516..35997731 -Gossypium turneri (D10) genome NSF_v1_a2
Dt_chr9chromosomeDt_chr9:50080649..50080878 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr9chromosomeAt_chr9:34322183..34322420 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D05chromosomeD05:26326802..26327031 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
scaffold1208_A05supercontigscaffold1208_A05:59185..59428 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D05chromosomeGhir_D05:26477361..26477590 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A05chromosomeGhir_A05:29693157..29693404 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D05chromosomeD05:25757372..25757601 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:29574566..29574817 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D05chromosomeD05:26310464..26310692 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:30623030..30623283 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D05chromosomeD05:26176723..26176952 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A05chromosomeA05:29698873..29699138 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D05chromosomeGbar_D05:26159896..26160103 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A05chromosomeGbar_A05:28382958..28383189 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D05chromosomeD05:25962586..25962801 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A05chromosomeA05:29963706..29963947 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017627.1chromosomeCM017627.1:25976776..25976995 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017614.1chromosomeCM017614.1:30000181..30000372 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017653.1chromosomeCM017653.1:26397264..26397479 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017640.1chromosomeCM017640.1:30374971..30375176 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017705.1chromosomeCM017705.1:26005654..26005849 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017692.1chromosomeCM017692.1:29750422..29750651 +Gossypium darwinii (AD5) genome HGS_v1.1
D05chromosomeD05:26833796..26834025 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A05chromosomeA05:31073683..31073930 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:31087526..31087746 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:30544927..30545139 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr05chromosomeChr05:24475628..24475851 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_05chromosomeB_05:55989910..55990092 -Gossypium anomalum (B1) genome NSF_v1
Chr09chromosomeChr09:24995842..24996063 +Gossypium thurberi (D1-5) genome CRI_v1
chr09chromosomechr09:22161505..22161694 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_09chromosomeChr_09:20735361..20735896 +Gossypium harknessii (D2-2) genome ISU_v1
Chr09chromosomeChr09:25759613..25759806 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr09chromosomeChr09:20542819..20542994 +Gossypium aridum (D4) genome ISU_v1
E05chromosomeE05:32914445..32914634 +Gossypium stocksii (E1) genome NSF_v1
Chr05chromosomeChr05:97559839..97560035 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr09chromosomeDPL0174:1..775 .
Chr09:24286535..24288171 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0174_origDPL0174_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A98.4DPL0174bView
2Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A81DPL0174bView
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A81.8DPL0174aView
4Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A141DPL0174aView
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A80.4DPL0174View
6LMY22 x LY343, RIL (2016)chr.19-1N/A103DPL0174View
7LMY22 x LY343, RIL (2020)D05N/A49.26DPL0174View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A98.38DPL0174bView
9TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A81.77DPL0174aView
Sequence
>DPL0174 ID=DPL0174; Name=DPL0174; organism=Gossypium hirsutum; type=genetic_marker; length=230bp
TTACACACCACCTCCCTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCATGTACACATTTCTTTGTGTGTATATATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATATATAAAA
CTAGTTTACCCTTTGCGGCCAGGTGGTGTGTGAAAAGCTATTGATGAATG
CCTTTACAGAGAAGTGTACATGATGCCGAT