DC40175, DC40175 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40175
Genbank IDGQ394652
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1675
Source Typegenomic
Primer 1DC40175_F: TTGCTCAGGTTTTGATGTC
Primer 2DC40175_R: AGGTGATGACCATCGGTA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394652
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:56442451..56442696 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:94136528..94136750 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:55178869..55179090 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:103336314..103336536 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:49578896..49579119 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:33153736..33153954 +Gossypioides kirkii genome ISU_v3n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:88966116..88966340 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:7383983..7384212 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:125124175..125124402 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold39.1supercontigscaffold39.1:2380577..2380799 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:11323938..11324183 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:53739206..53739451 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:90203516..90203738 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:55417486..55417730 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:107731142..107731364 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:57115114..57115359 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:108394305..108394527 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:56827609..56827854 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:105981554..105981776 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:54066168..54066413 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:102883322..102883544 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2537supercontigscaffold2537:250233..250455 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2537supercontigscaffold2537:246166..246388 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:55383192..55383413 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:105828952..105829174 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:56090538..56090759 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:105866099..105866321 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:56198539..56198774 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:104454625..104454847 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:57677716..57677955 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:111725874..111726096 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:55701418..55701639 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:102003226..102003448 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:57310049..57310294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:109462008..109462230 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:112780333..112780554 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:10396441..10396665 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:44968949..44969172 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:88778338..88778555 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:53655808..53656031 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:40880941..40881162 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:36569491..36569720 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:54445585..54445814 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:39555683..39556005 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:31185979..31186200 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:37972283..37972510 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:106111994..106112230 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:90256485..90256712 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:17398117..17398376 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1675MONCS1675Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A45.8DC40175View
2GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A79.8DC40175View
3GX1135 x GX100-2, RIL (2015)AD_ch15_Dt.01N/A0.6DC40175View
4GX1135 x GX100-2, RIL (2016)AD_ch15_Dt.01N/A0.6DC40175View
5Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A41DC40175View
6TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A45.76DC40175View
Sequence
>DC40175 ID=DC40175; Name=DC40175; organism=Gossypium hirsutum; type=genetic_marker; length=244bp
TTGCTCAGGTTTTGATGTCATATATATAGTATGTTTATTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGGTTACTGCTAAAAAGACTAAAAATCT
TATTTGTTTGTGTGATAGACTCGGTTGAGCGAAGAAGCAGCAGATGCCGT
AAAGCAATTGTTGCCAAAATGGGCGGAAGATGATCTAGGGAGCGTGTGTT
CATGGGCGGATCAAGTGAAGTTCCGTTACCGATGGTCATCACCT