DC40085, DC40085 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40085
Genbank IDGQ394595
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1618
Source Typegenomic
Primer 1DC40085_F: TTACTGCGAACCTTCCTG
Primer 2DC40085_R: CATCGGGAAGAAGAAGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394595
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:44255224..44255382 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:41947503..41947669 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:35582358..35582520 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:8042450..8042607 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:12325372..12325517 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:8385108..8385266 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:41994921..41995079 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:44042135..44042293 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:43584830..43584988 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:43803948..43804106 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:41875251..41875409 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:44389807..44389973 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5046supercontigscaffold5046:5137..5303 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:42654494..42654660 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:45135704..45135870 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:42888047..42888205 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:44286422..44286580 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:43468045..43468201 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:45503507..45503665 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:41795731..41795894 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:42354786..42354934 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:34865255..34865403 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:24175734..24175879 -Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:11110777..11110937 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1618MONCS1618Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A88.82MON_DC40085View
2DH962 X Ji Mian 5, F2 (2015)AD_ch23_Dt.09N/A88.82MON_DC40085View
3DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A39.2MON_DC40085View
4DH962 x Ji Mian 5, RIL (2015)AD_ch23_Dt.09N/A39.2MON_DC40085View
5Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A89DC40085View
6W10 x TM-1, F2:3 (2015)AD_ch23_Dt.09N/A42.9DC40085View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A112.2DC40085View
Sequence
>DC40085 ID=DC40085; Name=DC40085; organism=Gossypium hirsutum; type=genetic_marker; length=159bp
TTACTGCGAACCTTCCTGCAGTCTATAACTCTTCAGCTTACTTTATAGTA
GTGTCTTTTTGCTACTTTCGTGTCCACTCCCCTCCTCTCTCTCTCTCTCT
CCCTCTCTCCCTCTCTCTCTCTCCTTTGCAATGGCGAAATATGCTTCTTC
TTCCCGATG