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Marker Overview
| Name | CIR0407 |
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| Alias | CIR407
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| Genbank ID | AJ567331 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567331
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| Source Type | genomic |
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| Repeat Motif | (GT)14 |
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| PCR Condition | Annealing temperature: 51 |
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| Primer 1 | CIR407_F: GCACAGAACATCCATACA |
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| Primer 2 | CIR407_R: TCTCTCTCTCTTTCACACAC |
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| Product Length | 151 |
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| Polymorphism | P_ CIR0407 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch25_Dt.06 | N/A | 38.66 | CIR407 | View |
| 2 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch25_Dt.06 | N/A | 11.9 | CIR407 | View |
| 3 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch25_Dt.06 | N/A | 79.1 | CIR407 | View |
| 4 | Emian-22 x 3-79, BC1 (2011) | AD_ch25_Dt.06 | N/A | 67.07 | CIR407 | View |
| 5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch25_Dt.06 | N/A | 103.2 | CIR407 | View |
| 6 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch25_Dt.06 | N/A | 80.18 | CIR407 | View |
| 7 | Yumian-1 x T586, RIL (2015) | AD_ch25_Dt.06 | N/A | 71.6 | CIR407 | View |
| 8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch25_Dt.06 | N/A | 46.1 | CIR407 | View |
| 9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch25_Dt.06 | N/A | 268.2 | CIR407* | View |
| 10 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 118 | cir0407 | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 107.3 | CIR407-170 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 33.78 | CIR407-170 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 43.7 | CIR407-170 | View |
Sequence
>CIR0407 ID=CIR0407; Name=CIR0407; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
GCACAGAACATCCATACACATTTCAGTTGTGGGAGTGATTGGCCAAAACA
GTCAACAAAAAATGCATGTATGTGCATGTCATATGCATGTTGTTGTATAC
ATATATATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAG
A
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