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Marker Overview
Name | CIR0401 |
Alias | CIR401
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Genbank ID | AJ567325 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567325
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Source Type | genomic |
Repeat Motif | (GT)8 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR401_F: TGGCGACTCCCTTTT |
Primer 2 | CIR401_R: AAAAGATGTTACACACACACAC |
Product Length | 125 |
Polymorphism | P_ CIR0401 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch02_At.02 | N/A | 54.4 | CIR401a | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 148.52 | CIR401a | View |
3 | Emian-22 x 3-79, BC1 (2015) | AD_ch05_At.05 | N/A | 142.6 | CIR401a | View |
4 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch05_At.05 | N/A | 125.4 | CIR401b | View |
5 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 73.14 | CIR401b | View |
6 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch02_At.02 | N/A | 65.9 | CIR401 | View |
7 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch02_At.02 | N/A | 39.28 | CIR401 | View |
8 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch02_At.02 | N/A | 32.04 | CIR401 | View |
9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 141.5 | CIR401 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 158 | cir0401 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 136 | cir0401 | View |
12 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch10_At.10 | N/A | 94.5 | CIR401 | View |
Sequence
>CIR0401 ID=CIR0401; Name=CIR0401; organism=Gossypium hirsutum; type=genetic_marker; length=125bp TGGCGACTCCCTTTTTTAATAAAAATCGAAAGTCAGTTTTCAAATTTCCA ATAAGTCACTCAATTAGCGAACAAGCAAAAATTTTTACGTCGCTACATGG TGTGTGTGTGTGTGTAACATCTTTT
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