CIR0292, CIR0292 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0292
AliasCIR292
Genbank IDAJ567236
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567236
Source Typegenomic
Repeat Motif(CA)6(GA)6(N)out(GA)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR292_F: CTTCTTCTTCGTCTTCGT
Primer 2CIR292_R: TCAGCCGCACATTAG
Product Length144
PolymorphismP_ CIR0292
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567236
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D02chromosomeD02:69890016..69890161 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018216.1chromosomeCM018216.1:66049965..66050128 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_03chromosomeD5_03:845942..846093 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_03chromosomeKI_03:41262750..41262899 -Gossypioides kirkii genome ISU_v3
Dt_chr5chromosomeDt_chr5:7236392..7236537 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D02chromosomeD02:66474780..66474925 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D02chromosomeGhir_D02:68951749..68951894 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D02chromosomeD02:68955546..68955691 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D02chromosomeD02:70287632..70287777 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D02chromosomeD02:67403500..67403645 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold10802supercontigscaffold10802:122140..122303 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D02chromosomeGbar_D02:66811532..66811693 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
CM017624.1chromosomeCM017624.1:69056390..69056535 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017650.1chromosomeCM017650.1:70701719..70701894 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017702.1chromosomeCM017702.1:67608327..67608501 -Gossypium darwinii (AD5) genome HGS_v1.1
D02chromosomeD02:71370199..71370344 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr03chromosomeChr03:62230313..62230464 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_03chromosomeB_03:1008908..1009055 +Gossypium anomalum (B1) genome NSF_v1
Chr05chromosomeChr05:65269791..65269935 -Gossypium thurberi (D1-5) genome CRI_v1
Chr05chromosomeChr05:66765717..66765865 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr05chromosomeChr05:36977293..36977446 -Gossypium gossypioides (D6) genome ISU_v1
F03chromosomeF03:109414945..109415113 -Gossypium longicalyx (F1) genome NSF_v1
Chr03chromosomeChr03:984269..984405 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567236AJ567236Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A191.2CIR292aView
2CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A201CIR292bView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A179.7CIR292View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A124.97CIR292View
5TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A13.38CIR292View
6TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A113CIR292View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A143.2CIR292View
8AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A203cir0292View
9TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A113.04CIR292View
10PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A14.3CIR292View
Sequence
>CIR0292 ID=CIR0292; Name=CIR0292; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
CTTCTTCTTCGTCTTCGTTGATTTTTTCTTTCTAAATTCTAAATTCCCAA
CATTTCACTTCACTGCTACAAACAGGAGAGAGAGAGAGAGGGAGACCCAG
TTGTGTTTTTTTTAGTTCTAGCTGTTTACCTAATGTGCGGCTGA