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Marker Overview
Name | CIR0291 |
Alias | CIR291
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Genbank ID | AJ567235 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567235
|
Source Type | genomic |
Repeat Motif | (CA)6 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR291_F: TTTGGTGACTCGGTTT |
Primer 2 | CIR291_R: GCATTTCGGCTCTTAC |
Product Length | 103 |
Polymorphism | P_ CIR0291 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch13_At.13 | N/A | 147 | CIR291c | View |
2 | SG 747 x Giza 75, BIL (2013) | AD_ch10_At.10 | N/A | 32 | CIR291c | View |
3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch08_At.08 | N/A | 181.3 | CIR291a | View |
4 | SG 747 x Giza 75, BIL (2013) | AD_ch06_At.06 | N/A | 61.3 | CIR291a | View |
5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch04_At.04 | N/A | 95.9 | CIR291b | View |
6 | SG 747 x Giza 75, BIL (2013) | AD_ch08_At.08 | N/A | 44.1 | CIR291b | View |
7 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch06_At.06 | N/A | 143.6 | CIR291f | View |
8 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch09_At.09 | N/A | 31.6 | CIR291d | View |
9 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch10_At.10 | N/A | 59.1 | CIR291e | View |
10 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch12_At.12 | N/A | 103.16 | CIR291 | View |
11 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch13_At.13 | N/A | 92.01 | CIR291 | View |
12 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch04_At.04 | N/A | 48.36 | CIR291 | View |
13 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch06_At.06 | N/A | 64.15 | CIR291 | View |
14 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 125.19 | CIR291 | View |
15 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch09_At.09 | N/A | 29.01 | CIR291 | View |
16 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch08_At.08 | N/A | 49.39 | CIR291 | View |
17 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch12_At.12 | N/A | 56.36 | CIR291 | View |
18 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch04_At.04 | N/A | 34.04 | CIR291 | View |
19 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch06_At.06 | N/A | 27.85 | CIR291 | View |
20 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch10_At.10 | N/A | 57 | CIR291 | View |
21 | Yumian-1 x T586, RIL (2006) | AD_ch08_At.08 | N/A | 23 | CIR291 | View |
22 | Yumian-1 x T586, RIL (2015) | AD_ch08_At.08 | N/A | 41.9 | CIR291 | View |
23 | Yumian-1 x 7235, RIL (2015) | AD_ch08_At.08 | N/A | 60.3 | CIR291 | View |
24 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch13_At.13 | N/A | 53.8 | CIR291 | View |
25 | GX1135 x VGX100-2, RIL (2016) | AD_ch06_At.06 | N/A | 68.9 | CIR291 | View |
26 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 86 | cir0291 | View |
27 | AD-genome wide Reference Map (2009) | AD_ch06_At.06 | N/A | 61 | cir0291 | View |
28 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 147 | cir0291 | View |
29 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 58 | cir0291 | View |
30 | AD-genome wide Reference Map (2009) | AD_ch10_At.10 | N/A | 49 | cir0291 | View |
31 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 188 | cir0291 | View |
32 | TM-1 x Hai-7124, BC1 (2007) | AD_ch06_At.06 | N/A | 94.7 | CIR291-50 | View |
33 | TM-1 x Hai-7124, BC1 (2008) | AD_ch06_At.06 | N/A | 58.91 | CIR291-50 | View |
34 | TM-1 x Hai-7124, BC1 (2012) | AD_ch06_At.06 | N/A | 60.2 | CIR291-50 | View |
35 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 44.4 | CIR291-620 | View |
36 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 84.87 | CIR291-620 | View |
37 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 49.1 | CIR291-620 | View |
38 | TM-1 x Hai-7124, BC1 (2007) | AD_ch10_At.10 | N/A | 42.5 | CIR291-80 | View |
39 | TM-1 x Hai-7124, BC1 (2008) | AD_ch10_At.10 | N/A | 54.74 | CIR291-80 | View |
40 | TM-1 x Hai-7124, BC1 (2012) | AD_ch10_At.10 | N/A | 73.2 | CIR291-80 | View |
41 | Yumian-1 x T586, RIL (2009) | AD_ch08_At.08 | N/A | 18.2 | CIR291/400y(C6) | View |
42 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch13_At.13 | N/A | 87.5 | CIR291 | View |
Sequence
>CIR0291 ID=CIR0291; Name=CIR0291; organism=Gossypium hirsutum; type=genetic_marker; length=103bp TTTGGTGACTCGGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCAC TTTAGGGCTGTCACACACACACACTATATATGAATCGGTAAGAGCCGAAA TGC
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