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Marker Overview
| Name | CIR0156 |
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| Alias | CIR156
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| Genbank ID | AJ567103 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567103
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| Source Type | genomic |
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| Repeat Motif | (TG)8(GA)5 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR156_F: CATTGCCCAAGGAGA |
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| Primer 2 | CIR156_R: GTAACCAATGAATCCCAG |
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| Product Length | 120 |
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| Polymorphism | P_ CIR0156 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch21_Dt.11 | N/A | 103.7 | CIR156-113 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch21_Dt.11 | N/A | 260.1 | CIR156 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch21_Dt.11 | N/A | 159.63 | CIR156 | View |
| 4 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A11 | N/A | 219.6 | CIR156 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch21_Dt.11 | N/A | 32.41 | CIR156 | View |
| 6 | TM-1 x 3-79, RIL (2014) | AD_ch21_Dt.11 | N/A | 32.6 | CIR156 | View |
| 7 | SG 747 x Giza 75, BIL (2013) | AD_ch21_Dt.11 | N/A | 97.3 | CIR156 | View |
| 8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch21_Dt.11 | N/A | 205.7 | CIR156a | View |
| 9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch21_Dt.11 | N/A | 205.8 | CIR156b | View |
| 10 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 104 | cir0156 | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch21_Dt.11 | N/A | 161.2 | CIR156-150 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch21_Dt.11 | N/A | 153.83 | CIR156-150 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch21_Dt.11 | N/A | 23 | CIR156-150 | View |
| 14 | GB713 x Nem-X, F2 (2011) | AD_ch21_Dt.11 | N/A | 61 | CIR156_117 | View |
| 15 | TM-1 x Hai-7124, BC1S1 (2007) | AD_ch21_Dt.11 | N/A | 106.7 | CIR0156_150 | View |
| 16 | TM-1 x 3-79, RIL (2012.v3) | AD_ch21_Dt.11 | N/A | 32.58 | CIR156 | View |
Sequence
>CIR0156 ID=CIR0156; Name=CIR0156; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
CATTGCCCAAGGAGATATATGTGTGTGTGTGTGTGAGAGAGAGAATTGGG
ACTGCATAATTCCATTATTTTCATAACTTCTTGTCAAATTAATATTCTAG
CTCTGGGATTCATTGGTTAC
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