CIR0121, CIR0121 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0121
AliasCIR121
Genbank IDAJ567069
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567069
Source Typegenomic
Repeat Motif(AC)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR121_F: GGTGAATCCGACAAAC
Primer 2CIR121_R: AATTGTAAGAGCCGAAA
Product Length88
PolymorphismP_ CIR0121
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567069
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:15318751..15318842 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:14131416..14131515 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:48248567..48248652 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:50290441..50290582 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:12172325..12172416 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:14173560..14173651 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:14542519..14542610 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:14237348..14237439 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:14761445..14761536 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:14714549..14714640 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:15712601..15712700 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2181supercontigscaffold2181:117537..117636 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:13933211..13933310 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:14501741..14501842 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:14384802..14384899 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:14663646..14663737 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:14500834..14500935 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:14843641..14843732 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:13897236..13897321 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:14196913..14196998 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:11700126..11700318 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:9156763..9156870 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:11539864..11539947 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr11chromosomeCIR0121:1..230 .
Chr11:13994355..13994582 +		n/a
scaffold23supercontigCIR0121:1..230 .
scaffold23:1649331..1649558 -		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567069AJ567069Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch20_Dt.10N/A69CIR121View
2Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A60CIR121View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch20_Dt.10N/A116.2CIR121View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch20_Dt.10N/A44.03CIR121View
5JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A168.2CIR121View
6TM-1 x 3-79, RIL (2012)AD_ch20_Dt.10N/A69.57CIR121View
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A72.48CIR121View
8Handan-208 x Pima-90, F2:3 (2007)AD_ch20_Dt.10N/A89.1CIR121View
9TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A70.8CIR121View
10SG 747 x Giza 75, BIL (2013)AD_ch20_Dt.10N/A32.6CIR121View
11AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A125cir0121View
12TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A70.8CIR121View
Sequence
>CIR0121 ID=CIR0121; Name=CIR0121; organism=Gossypium hirsutum; type=genetic_marker; length=88bp
GGTGAATCCGACAAACATACACACACACACATATGATAATATACATGATA
CATAAACAATTATAGAACCATTTTCGGCTCTTACAATT