CER0098, CER0098 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCER0098
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Source SequenceMONCS0111
Source TypeEST
PCR ConditionAnnealing temperature: 55
Primer 1CER0098_F: TTCACGTGTCTTGCTTTGTTG
Primer 2CER0098_R: GGTGGGTCTTTTGAACCAAAT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D11chromosomeD11:73084709..73084917 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A11chromosomeA11:114172001..114172224 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018225.1chromosomeCM018225.1:69416348..69416558 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018212.1chromosomeCM018212.1:114583657..114583883 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_11chromosomeD5_11:160549..160759 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:206329..206561 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_11chromosomeD10_11:67534392..67534602 +Gossypium turneri (D10) genome NSF_v1_a2
CM016624.1chromosomeCM016624.1:145135479..145135690 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr12chromosomeDt_chr12:5355759..5355969 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D11chromosomeD11:65972563..65972771 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A11chromosomeA11:93113401..93113624 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D11chromosomeGhir_D11:72723879..72724087 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A11chromosomeGhir_A11:123001128..123001351 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D11chromosomeD11:71154470..71154678 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A11chromosomeA11:121212589..121212812 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D11chromosomeD11:72328415..72328625 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A11chromosomeA11:119196952..119197175 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D11chromosomeD11:69051311..69051521 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A11chromosomeA11:115750895..115751118 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt11chromosomeDt11:65546757..65546978 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
At11chromosomeAt11:96679074..96679300 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
At11chromosomeAt11:96673777..96673988 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold26095supercontigscaffold26095:125799..126020 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11559supercontigscaffold11559:400077..400303 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11559supercontigscaffold11559:394780..394991 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A11chromosomeGbar_A11:112962737..112962963 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Scaffold3329supercontigScaffold3329:158302..158512 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D11chromosomeD11:72103390..72103600 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A11chromosomeA11:116076519..116076745 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017633.1chromosomeCM017633.1:70645422..70645632 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017620.1chromosomeCM017620.1:120375949..120376178 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017659.1chromosomeCM017659.1:73404397..73404607 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017646.1chromosomeCM017646.1:126663508..126663734 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017711.1chromosomeCM017711.1:68925296..68925506 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017698.1chromosomeCM017698.1:114894768..114894985 +Gossypium darwinii (AD5) genome HGS_v1.1
D11chromosomeD11:72654820..72655028 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A11chromosomeA11:124010629..124010852 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr11chromosomeChr11:132391844..132392064 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr11chromosomeChr11:131146595..131146827 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr11chromosomeChr11:103783..103993 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_11chromosomeB_11:102159199..102159410 +Gossypium anomalum (B1) genome NSF_v1
Chr07chromosomeChr07:69481257..69481467 +Gossypium thurberi (D1-5) genome CRI_v1
chr07chromosomechr07:50114746..50114954 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_07chromosomeChr_07:49192498..49192708 +Gossypium harknessii (D2-2) genome ISU_v1
Chr07chromosomeChr07:71603768..71603981 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr07chromosomeChr07:45416826..45417083 +Gossypium aridum (D4) genome ISU_v1
Chr07_3472908chromosomeChr07_3472908:6417..6627 -Gossypium gossypioides (D6) genome ISU_v1
Chr07chromosomeChr07:48604216..48604426 +Gossypium lobatum (D7) genome ISU_v1
E11chromosomeE11:117088658..117088869 +Gossypium stocksii (E1) genome NSF_v1
F11chromosomeF11:99459452..99459663 +Gossypium longicalyx (F1) genome NSF_v1
Chr11chromosomeChr11:2228033..2228244 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr07chromosomeCER0098:1..441 .
Chr07:60819856..60820697 +
scaffold286supercontigCER0098:1..441 .
scaffold286:480638..481479 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0111MONCS0111Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A50.7CER098View
2Yumian-1 x 7235, RIL (2015)AD_ch21_Dt.11N/A0CER0098View
3GX1135 x GX100-2, RIL (2016)AD_ch11_At.11N/A28.9CER0098View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A238.5CER0098View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch11_At.11N/A0CER0098View
6LMY22 x LY343, RIL (2016)chr.11N/A54.5CER0098View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch11_At.11N/A153.98CER0098View
Sequence
>CER0098 ID=CER0098; Name=CER0098; organism=Gossypium hirsutum; type=genetic_marker; length=227bp
TTCACGTGTCTTGCTTTGTTGCGTACTGTTTTTGTTCTTTGATCGTCTTT
GTTTTGATTCTTAGACGGTGTTGCTTTTTAAATATATAGGGATTCACAAG
AGAGCAAAAGAGAAGCTTGATTTTGTGTGTAGAGAATAATGGAAGGAAAT
AAAAAAGTGGGGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTAGCTTC
AGAGCTATTTGGTTCAAAAGACCCACC