BNL3482, BNL3482 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3482
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3482_orig
Source Typegenomic
Repeat Motif(AC)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL3482_F: ATTTGCCCCAGGTTTTTTTT
Primer 2BNL3482_R: GCAACACCTTTTCCTCCCTA
PolymorphismP_ BNL3482
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D12chromosomeD12:52000287..52000426 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018226.1chromosomeCM018226.1:48653427..48653573 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Dt_chr8chromosomeDt_chr8:45027300..45027438 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Dt_chr13chromosomeDt_chr13:43307428..43307569 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold3388_A12supercontigscaffold3388_A12:62833..62974 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D12chromosomeD12:48243328..48243468 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:51084953..51085093 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A12chromosomeA12:94445669..94445810 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D12chromosomeD12:51150929..51151067 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A12chromosomeA12:91973221..91973362 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D12chromosomeD12:48949786..48949924 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A12chromosomeA12:89108208..89108349 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt12chromosomeDt12:51008848..51008993 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold204supercontigscaffold204:26577..26722 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D12chromosomeGbar_D12:47921862..47922008 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
CM017634.1chromosomeCM017634.1:49020395..49020533 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017660.1chromosomeCM017660.1:51819770..51819901 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017712.1chromosomeCM017712.1:49625750..49625890 +Gossypium darwinii (AD5) genome HGS_v1.1
D12chromosomeD12:51161687..51161827 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A12chromosomeA12:95409254..95409395 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3482_origBNL3482_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch26_Dt.12N/A74.4BNL3482View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch26_Dt.12N/A46.64BNL3482View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch20_Dt.10N/A9.44BNL3482View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch26_Dt.12N/A33.83BNL3482View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch26_Dt.12N/A30.3BNL3482View
6Palmeri x K-101, F2 (2007)AD_ch20_Dt.10N/A22.3BNL3482View
7Xinluzao-1 x Hai-7124, F2 (2008)AD_ch26_Dt.12N/A74.4BNL3482View
8Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A28BNL3482View
9AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A175BNL3482View
10AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A123BNL3482View
11GX1135 x VGX100-2, RIL (2016)AD_ch23_Dt.09N/A74.6BNL3482View
12Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A41BNL3482View
13Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch26_Dt.12N/A82.6BNL3482aView
14HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch26_Dt.12N/A26BNL3482-138View
15TM-1 x Hai-7124, BC1 (2008)AD_ch26_Dt.12N/A72.16BNL3482-145View
16TM-1 x Hai-7124, BC1 (2007)AD_ch26_Dt.12N/A72.5BNL3482-145View
17TM-1 x Hai-7124, BC1 (2005.v0)AD_ch26_Dt.12N/A84BNL3482-145View
18TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A75.4BNL3482-145View
19Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch26_Dt.12N/A50BNL3482-View
20PD 94042 x (AD)4-08, F2 (2016)AD_ch26_Dt.12N/A115.4BNL3482View
Sequence
>BNL3482 ID=BNL3482; Name=BNL3482; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
ATTTGCCCCAGGTTTTTTTTTAATATATGGTTTACATTTTTCTTACATAA
TGTAAAAAAAAAAAAACCCAACACACACACACACACACACACACAATATT
CAATCGGAGTAAGGAGAAAATAGGGAGGAAAAGGTGTTGC