BNL3426, BNL3426 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3426
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3426_orig
Source Typegenomic
Repeat Motif(CA)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3426_F: CTGTCGATTCTAGTGGCTAAGC
Primer 2BNL3426_R: GAGTGCGATAAATTGCCAAA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:43066943..43067088 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Dt_chr9chromosomeDt_chr9:14498890..14499033 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:41863778..41863923 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:42914001..42914146 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:44003198..44003343 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:45143370..45143509 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:43363091..43363236 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:44628252..44628504 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20695supercontigscaffold20695:106152..106404 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:49537651..49537778 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:44642408..44642532 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:44012122..44012259 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:43872949..43873072 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:45612854..45612999 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:39695315..39695444 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_09chromosomeChr_09:30658353..30658574 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeBNL3426:1..521 .
Chr03:19545611..19546060 -		n/a
scaffold379supercontigBNL3426:1..525 .
scaffold379:652901..653402 -		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3426_origBNL3426_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A62.33BNL3426View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A216BNL3426View
3TM-1 x 3-79, RIL (2006)AD_ch19_Dt.05N/A15.2BNL3426View
4TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A128.31BNL3426View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch19_Dt.05N/A125.3BNL3426View
6Yumian-1 x T586, RIL (2015)AD_ch19_Dt.05N/A126BNL3426View
7TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A57.7BNL3426View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch19_Dt.05N/A122.8BNL3426View
9Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A101BNL3426View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch19_Dt.05N/A146.89BNL3426View
11TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A57.72BNL3426View
Sequence
>BNL3426 ID=BNL3426; Name=BNL3426; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
CTGTCGATTCTAGTGGCTAAGCCACGCACACACACACACACACGTACGCA
CGCACGCACGTACGCGCACACACACACACACACACACACACACACATGCA
CACACACACACATATATATATCTGATTTTGGCAATTTATCGCACTC