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Marker Overview
| Name | BNL3383 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3383_orig
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| Source Type | genomic |
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| Repeat Motif | (AG)10, (CT)11 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3383_F: GTGTTGTCATCGGCACTGAC |
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| Primer 2 | BNL3383_R: TGCAATGGTTCAGTGGTGAT |
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| Polymorphism | P_ BNL3383 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 7235 x TM-1, RIL (2007) | AD_ch23_Dt.09 | N/A | 15.1 | BNL3383 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch23_Dt.09 | N/A | 146.7 | BNL3383 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch23_Dt.09 | N/A | 80.6 | BNL3383 | View |
| 4 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch23_Dt.09 | N/A | 31.8 | BNL3383 | View |
| 5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 26.2 | BNL3383 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 42 | BNL3383 | View |
| 7 | TM-1 x 3-79, RIL (2006) | AD_ch23_Dt.09 | N/A | 8.8 | BNL3383 | View |
| 8 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch23_Dt.09 | N/A | 0 | BNL3383 | View |
| 9 | AD-genome wide Reference Map (2009) | AD_ch26_Dt.12 | N/A | 45 | BNL3383 | View |
| 10 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 120.93 | BNL3383 | View |
| 11 | DH962 x Jinmian-6, F2 (2009) | AD_ch23_Dt.09 | N/A | 28.3 | BNL3383 | View |
| 12 | DH962 x Jinmian-6, F2 (2009) | AD_ch23_Dt.09 | N/A | 28.3 | BNL3383 | View |
| 13 | HS427-10 x TM-1, F2:3 (2005) | AD_ch23_Dt.09 | N/A | 0 | BNL3383 | View |
| 14 | DH962 X Ji Mian 5, F2 (2015) | AD_ch09_At.09 | N/A | 21.57 | BNL3383 | View |
| 15 | DH962 X Ji Mian 5, F2 (2015) | AD_ch23_Dt.09 | N/A | 21.57 | BNL3383 | View |
| 16 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 19.4 | BNL3383 | View |
| 17 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch23_Dt.09 | N/A | 64.5 | BNL3383 | View |
| 18 | DH962 x Ji Mian 5, RIL (2015) | AD_ch09_At.09 | N/A | 12.6 | BNL3383 | View |
| 19 | DH962 x Ji Mian 5, RIL (2015) | AD_ch23_Dt.09 | N/A | 12.6 | BNL3383 | View |
| 20 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 101 | BNL3383 | View |
| 21 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch23_Dt.09 | N/A | 19 | BNL3383-189 | View |
| 22 | TM-1 x Hai-7124, BC1 (2007) | AD_ch23_Dt.09 | N/A | 44.2 | BNL3383-190 | View |
| 23 | TM-1 x Hai-7124, BC1 (2008) | AD_ch23_Dt.09 | N/A | 43.88 | BNL3383-190 | View |
| 24 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch26_Dt.12 | N/A | 122.1 | BNL3383-190 | View |
| 25 | TM-1 x Hai-7124, BC1 (2012) | AD_ch23_Dt.09 | N/A | 42.8 | BNL3383-190 | View |
| 26 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch09_At.09 | N/A | 17.1 | BNL3383(C23) | View |
| 27 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch23_Dt.09 | N/A | 17.1 | BNL3383(C23) | View |
| 28 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 19.37 | BNL3383 | View |
| 29 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch23_Dt.09 | N/A | 50.8 | BNL3383 | View |
Sequence
>BNL3383 ID=BNL3383; Name=BNL3383; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
GTGTTGTCATCGGCACTGACCTAACCCCCACTATCAAATGGCTCCTCTCT
CTCTCTCTCTCTCTGTCTCTCTCTTCACCCTCCTCAACCTCGTTAGCACC
CCCTCAACTCTCAACACTATACCAAGAACTTACAACCACCATCAAGCTCA
CCATTGGCCACCGCCTCCCCCATCACCACTGAACCATTGCA
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