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Marker Overview
| Name | BNL3345 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3345_orig
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| Source Type | genomic |
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| Repeat Motif | (GA)10 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3345_F: CGAAGCGCGATTAAGAGAAC |
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| Primer 2 | BNL3345_R: AAAGCGAAGCCAACAGTCTC |
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| Polymorphism | P_ BNL3345 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 152.7 | BNL3345 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch15_Dt.01 | N/A | 109.35 | BNL3345 | View |
| 3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch15_Dt.01 | N/A | 65.27 | BNL3345 | View |
| 4 | Palmeri x K-101, F2 (2007) | AD_ch15_Dt.01 | N/A | 102.8 | BNL3345 | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 180 | BNL3345 | View |
| 6 | DH962 x Jinmian-6, F2 (2009) | AD_chU | N/A | 15.3 | BNL3345 | View |
| 7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 38.42 | BNL3345 | View |
| 8 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 38.42 | BNL3345 | View |
| 9 | DH962 x Ji Mian 5, RIL (2015) | AD_ch01_At.01 | N/A | 79 | BNL3345 | View |
| 10 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 79 | BNL3345 | View |
| 11 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 102.6 | BNL3345a | View |
| 12 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch15_Dt.01 | N/A | 86.1 | BNL3345a | View |
| 13 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 104.5 | BNL3345b | View |
| 14 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch26_Dt.12 | N/A | 89.7 | BNL3345b | View |
Sequence
>BNL3345 ID=BNL3345; Name=BNL3345; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
CGAAGCGCGATTAAGAGAACAAAAAGAAAAACTTAGTGAGGGAATTTTCT
GGAGAGAAAACGAAGGAACGGAAGAGAGGAGGGTATTTATAGGAGAGAAT
CAAAGAGGCTTTTTCTTTTGGCGGGGGAGAGAGAGAGAGAGAGAGAGTAA
TGGCTATGGCTGGGAGACTGTTGGCTTCGCTTT
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