BNL2967, BNL2967 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2967
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2967_orig
Source Typegenomic
Repeat Motif(GA)17, (TC)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL2967_F: GAAACTTCGGATGACTTTTGC
Primer 2BNL2967_R: TCGACTAGGATCTATTTCAAGATG
PolymorphismP_ BNL2967
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:55227072..55227256 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:35497143..35497319 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:68698042..68698218 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:8769168..8769352 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3206_A12supercontigscaffold3206_A12:32748..32932 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold1814supercontigScaffold1814:28704..28886 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:38323782..38323966 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:36952215..36952399 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:36637613..36637797 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3362supercontigscaffold3362:89866..90037 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:37366778..37366954 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:37490505..37490676 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:36927474..36927648 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:36155149..36155331 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:30914559..30914735 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:37141921..37142093 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:38411295..38411479 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:55479218..55479392 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:40235647..40235823 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2967_origBNL2967_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch12_At.12N/A0BNL2967-180View
2Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A61.49BNL2967View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch12_At.12N/A142.6BNL2967View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A102.78BNL2967View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch12_At.12N/A55.73BNL2967View
6Xinluzao-1 x Hai-7124, F2 (2008)AD_ch12_At.12N/A121.7BNL2967View
7AD-genome wide Reference Map (2009)AD_ch12_At.12N/A175BNL2967View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A47BNL2967View
9SG 747 x Giza 75, BIL (2013)AD_ch12_At.12N/A0BNL2967View
10Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A61BNL2967View
11Handan-208 x Pima-90, F2:3 (2007)AD_ch12_At.12N/A35.4BNL2967*View
12Handan-208 x Pima-90, F2:3 (2007)AD_ch12_At.12N/A35.4BNL2967bView
13PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A112.6BNL2967View
Sequence
>BNL2967 ID=BNL2967; Name=BNL2967; organism=Gossypium hirsutum; type=genetic_marker; length=185bp
GAAACTTCGGATGACTTTTGCTTAAATTTGGTAAACTTTTCTGGAAATTT
TGGAGACAATTTTGAGAGAGTAAAAGTTTAGATATATTCTCTAATATGTG
GTCTATGAAAATGACCAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAATGTAACATCTTGAAATAGATCCTAGTCGA