BNL2786, BNL2786 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	BNL2786
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Germplasm	Deltapine 90
Source Sequence	BNL2786_orig
Source Type	genomic
Repeat Motif	(GA)30, (TC)30
PCR Condition	Annealing temperature: 55
Primer 1	BNL2786_F: CCCTTTTCCCCCCTTTTTAT
Primer 2	BNL2786_R: ATGGTGACGAAAGGAGTTGG
Comment	Primer data obtained in 2000

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D05	chromosome	D05:28689362..28689557 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018219.1	chromosome	CM018219.1:27167421..27167600 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr9	chromosome	Dt_chr9:42519242..42519447 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D05	chromosome	D05:27801925..27802092 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D05	chromosome	Ghir_D05:27968444..27968635 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D05	chromosome	D05:27172946..27173143 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D05	chromosome	D05:27800103..27800301 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D05	chromosome	D05:27673182..27673379 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D05	chromosome	Gbar_D05:27673040..27673219 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D05	chromosome	D05:27437823..27438002 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017627.1	chromosome	CM017627.1:27453486..27453691 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017705.1	chromosome	CM017705.1:27482159..27482337 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D05	chromosome	D05:28321693..28321888 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Germplasm


Stock Name	Type
Deltapine 90	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BNL2786_orig	BNL2786_orig	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	AD-genome wide Reference Map (2009)	AD_ch19_Dt.05	N/A	203	BNL2786	View
2	TM-1 x 3-79, RIL (2012)	AD_ch19_Dt.05	N/A	110.36	BNL2786	View
3	Yumian-1 x T586, RIL (2006)	AD_ch19_Dt.05	N/A	10.9	BNL2786	View
4	DH962 x Jinmian-6, F2 (2009)	AD_ch19_Dt.05	N/A	85.5	BNL2786	View
5	DH962 x Jinmian-6, F2 (2009)	AD_ch19_Dt.05	N/A	85.5	BNL2786	View
6	Yumian-1 x T586, RIL (2015)	AD_ch19_Dt.05	N/A	116	BNL2786	View
7	DH962 X Ji Mian 5, F2 (2015)	AD_ch19_Dt.05	N/A	101.89	BNL2786	View
8	TM-1 x 3-79, RIL (2014)	AD_ch19_Dt.05	N/A	75.7	BNL2786	View
9	DH962 x Ji Mian 5, RIL (2015)	AD_ch19_Dt.05	N/A	25.5	BNL2786	View
10	Monsanto SSR Bin Map, (2009)	AD_ch19_Dt.05	N/A	121	BNL2786	View
11	Xinluzao-1 x Hai-7124, F2 (2008)	AD_ch19_Dt.05	N/A	184.1	BNL2786-1	View
12	Xinluzao-1 x Hai-7124, F2 (2008)	AD_ch19_Dt.05	N/A	187.5	BNL2786-2	View
13	Yumian-1 x T586, RIL (2009)	AD_ch19_Dt.05	N/A	9.5	BNL2786/95y	View
14	TM-1 x 3-79, RIL (2012.v3)	AD_ch19_Dt.05	N/A	75.73	BNL2786	View

Sequence

>BNL2786 ID=BNL2786; Name=BNL2786; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
CCCTTTTCCCCCCTTTTTATTTCATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTCTTTTTCTT
TCTTTCCTTTCATTTTTTCTTTTTATCTTCTTTTATTCTCTATTTCCTCT
CTTTTTCTTCTCTTACCCTAGACACCGCCCAACTCCTTTCGTCACCAT

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BNL2786, BNL2786 (genetic_marker) Gossypium hirsutum