BNL2571, BNL2571 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2571
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2571_orig
Source Typegenomic
Repeat Motif(AG)13, (TC)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL2571_F: TCGCTATCGCTCTGAAATCA
Primer 2BNL2571_R: ATGCCACGGAATTAGCAAAC
PolymorphismP_ BNL2571
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:99419034..99419282 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:103316208..103316472 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:118702115..118702360 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:153767199..153767439 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24962505..24962753 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_A13chromosomeGhir_A13:103269381..103269631 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:105497050..105497298 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:103730873..103731120 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:102235974..102236223 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6373supercontigscaffold6373:11598..11860 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:104193773..104194034 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:107694346..107694608 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:105359370..105359623 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:59420597..59420837 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:110404833..110405094 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:105416007..105416261 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:106467320..106467568 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:112487914..112488160 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117048476..117048721 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:54475764..54475995 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:55710201..55710433 +Gossypium thurberi (D1-5) genome CRI_v1n/a
E13chromosomeE13:108909349..108909610 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2571_origBNL2571_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A45BNL2571aView
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A53.6BNL2571aView
3Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch13_At.13N/A14.4BNL2571aView
4Palmeri x K-101, F2 (2007)AD_ch13_At.13N/A51.5BNL2571aView
5CCRI-36 x Hai-7124, F2 (2007)AD_ch18_Dt.13N/A67.3BNL2571bView
6Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch18_Dt.13N/A25.7BNL2571bView
7Palmeri x K-101, F2 (2007)AD_ch18_Dt.13N/A31.3BNL2571bView
8Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch18_Dt.13N/A6BNL2571bView
9Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A31.8BNL2571View
10Guazuncho-2 x VH8-4602, consensus (2009)AD_ch18_Dt.13N/A23.69BNL2571View
11Guazuncho-2 x VH8-4602, RIL (2009)AD_ch18_Dt.13N/A15.54BNL2571View
12AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A72BNL2571View
13Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A178BNL2571View
14AD-genome wide Reference Map (2009)AD_ch13_At.13N/A38BNL2571View
15H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A140.5BNL2571View
16H18 x TM-1, F2 (2005)AD_ch13_At.13N/A157.1BNL2571View
17SG 747 x Giza 75, BIL (2013)AD_ch13_At.13N/A1.8BNL2571View
18Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A41BNL2571View
19TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A32.04BNL2571-280View
20TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A26.8BNL2571-280View
21TM-1 x Hai-7124, BC1 (2005.v0)AD_ch13_At.13N/A190.3BNL2571-280View
22TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A114.7BNL2571-280View
23TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A32BNL2571-260View
24TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A34.64BNL2571-260View
25TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A85.4BNL2571-260View
26GB713 x Nem-X, F2 (2011)AD_ch18_Dt.13N/A60.7BNL2571_230View
27TM-1 x Hai-7124, BC1S1 (2007)AD_ch18_Dt.13N/A0BNL2571_260View
28CCRI-35 x Yumian-1, RIL (2017)AD_ch13_At.13N/A79.92BNL2571View
Sequence
>BNL2571 ID=BNL2571; Name=BNL2571; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
TCGCTATCGCTCTGAAATCAATCAATGAAACAAATAAATATACCCAAAAA
AAACTTGTTGAGAATGAAAATTTTCTCTTTTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTGTTTCTGGTGGGGTTTTTTTCGTTTTTTTTTTTTTNNNGGA
TTGGTACCCAAAAGTAGGAATTTATGGGTCAGCCAGTGGTTTTGTCGGGG
TTGGGGGGCATTGGCTTGCAAAGGATGTCGTTTGCTAATTCCGTGGCAT