BNL0830, BNL0830 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0830
AliasBNL830
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0830_orig
Source Typegenomic
Repeat Motif(AC)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL0830_F: TTCCGGGTTTTCAATAAACG
Primer 2BNL0830_R: GTTAATACTTTTTTTCTTTTGTGTGTG
PolymorphismP_ BNL0830
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:10520334..10520437 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:13219981..13220086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:10519934..10520037 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:12285447..12285552 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:10118502..10118607 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13758315..13758421 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:50433730..50433835 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:17182665..17182768 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:12695971..12696076 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:45173972..45174075 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:9663701..9663804 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:12050422..12050527 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:10983689..10983792 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:12801451..12801556 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:10760465..10760568 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12363276..12363381 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:10513075..10513178 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12698654..12698759 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10872815..10872918 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:12556551..12556656 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:12654690..12654795 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10609supercontigscaffold10609:149260..149365 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6250supercontigscaffold6250:166204..166307 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:11127470..11127573 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:12431038..12431143 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10957738..10957841 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:12446479..12446584 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:10721379..10721488 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:13414515..13414620 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:11615443..11615550 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:12709726..12709831 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10914603..10914706 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:12526950..12527055 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:11184061..11184164 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:12707552..12707657 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:12336084..12336189 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13648433..13648539 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:9978221..9978326 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:13811231..13811334 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:10646113..10646218 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:9698992..9699097 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:8730283..8730388 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10835236..10835341 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:10892623..10892728 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:7531102..7531205 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:9869018..9869121 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:15309871..15309972 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:11035938..11036049 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:177250607..177250714 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeBNL0830:1..241 .
Chr02:11985657..11985892 +
n/a
Chr2chromosomeBNL0830:1..241 .
Chr2:39511738..39511973 +
n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0830_origBNL0830_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A128.7BNL830View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch15_Dt.01N/A8BNL830View
3DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A22.1BNL830View
4DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A22.1BNL830View
5DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A54.48BNL830View
6DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A54.48BNL830View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch15_Dt.01N/A39.1BNL830View
8DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A26.7BNL830View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A109.5BNL830View
10LMY22 x LY343, RIL (2020)A01N/A141.28BNL830View
11Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A91.86BNL0830View
12AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A157BNL0830View
13(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch15_Dt.01N/A122.3BNL0830View
14Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A67.5BNL0830View
15LMY28 x XLZ24, RIL (2018)AD_ch20_Dt.10N/A51.41BNL0830View
16HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch15_Dt.01N/A24BNL830-97View
17CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A43.21BNL0830View
18PD 94042 x (AD)4-08, F2 (2016)AD_ch15_Dt.01N/A122.3BNL830View
Sequence
>BNL0830 ID=BNL0830; Name=BNL0830; organism=Gossypium hirsutum; type=genetic_marker; length=110bp
TTCCGGGTTTTCAATAAACGGATTCATTACCTTTCAAAGTTTTTGACTTT
ACACCCATCAAAATTTACAAACACACACACACACACACACAAAAGAAAAA
AAGTATTAAC