PGML1712, PGML1712 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1712
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AC)9
Primer 1PGML1712_F: TCAAATCATCAACCAAGCCA
Primer 2PGML1712_R: AGTCAGATTGCGGAACTCGT
Product Length330
Publication[view all]
CommentBAC_ID=FITC87390.g1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_180supercontigscaffold_180:76775..77059 -
CM018218.1chromosomeCM018218.1:50374494..50374823 +
CM018218.1chromosomeCM018218.1:50403130..50403451 +
D5_04chromosomeD5_04:3655734..3656061 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:2423145..2423429 -
Dt_chr8chromosomeDt_chr8:3004774..3005058 -
Dt_chr12chromosomeDt_chr12:4751681..4751991 -
D04chromosomeD04:47400148..47400458 +
scaffold4821supercontigscaffold4821:46747..47031 -
Ghir_D04chromosomeGhir_D04:52269157..52269467 +
Ghir_A04chromosomeGhir_A04:81020224..81020508 +
D04chromosomeD04:53083957..53084267 +
A04chromosomeA04:83845219..83845503 +
D04chromosomeD04:52125967..52126277 +
A04chromosomeA04:81312309..81312593 +
D04chromosomeD04:50107097..50107407 +
A04chromosomeA04:76933108..76933392 +
Gbar_D04chromosomeGbar_D04:48409879..48410208 +
Gbar_D04chromosomeGbar_D04:48438509..48438830 +
D04chromosomeD04:53540042..53540369 +
CM017613.1chromosomeCM017613.1:79599036..79599320 +
CM017652.1chromosomeCM017652.1:53443893..53444214 +
CM017639.1chromosomeCM017639.1:88074461..88074745 +
CM017704.1chromosomeCM017704.1:50711832..50712161 +
CM017704.1chromosomeCM017704.1:50735493..50735814 +
CM017691.1chromosomeCM017691.1:78036952..78037236 +
A04chromosomeA04:84994533..84994817 +
Chr04chromosomeChr04:104884517..104884801 +
Chr04chromosomeChr04:106729385..106729669 +
Chr04chromosomeChr04:3612754..3613083 -
B_02chromosomeB_02:4373422..4373693 -
Chr12chromosomeChr12:50308933..50309260 +
Chr12_6340970chromosomeChr12_6340970:4383..4704 -
E04chromosomeE04:101014513..101014794 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch04_At.04N/A52.2PGML1712View
2GX1135 x GX100-2, RIL (2016)AD_ch22_Dt.04N/A19.8PGML1712View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch04_At.04N/A60.7PGML1712View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch04_At.04N/A78.86PGML1712View
Sequence
>PGML1712 ID=PGML1712; Name=PGML1712; organism=Gossypium raimondii; type=genetic_marker; length=330bp
TCAAATCATCAACCAAGCCATTTCCTTATTCAAAACATACCATTTGCACT
TTCAGACAAACCATTCAAGCACTATACATATGGTCTCATAATATGATCAA
AACATACCTTAAAACACACACACACACACACATATATATACACACATCAA
CATATCTTACTTCACAAGCTAACCAAGTTCAAACTAAGCTAATAGATACA
ATTTAACACACCTATAACACCTCTATACGTGCCATAAAACCAAGCTACAA
AATGATCAAAAGACTATCGAATTGATAAAAGGATAATGTGAGCTTCGTGA
AGTCCGATTGACGAGTTCCGCAATCTGACT