PGML1671, PGML1671 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1671
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)7
Primer 1PGML1671_F: TGTTAACGACAATTAACGCTCAG
Primer 2PGML1671_R: TGCATAGTCACATCATTATTCATTAC
Product Length299
PolymorphismP_ PGML1671
Publication[view all]
CommentBAC_ID=FITC184919.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:2819733..2820031 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:97572596..97572883 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:2704586..2704881 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:99495215..99495499 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:47446928..47447226 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:95423700..95423984 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:2627808..2628112 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:3629969..3630273 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold178.1supercontigscaffold178.1:1032586..1032884 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:2373035..2373333 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:89273439..89273726 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:2799122..2799420 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:106272895..106273182 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold133_subseq_3724056_3844486_obj_A05supercontigscaffold133_subseq_3724056_3844486_obj_A05:75375..75662 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:2886460..2886758 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:2676186..2676484 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:106376829..106377116 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:2676701..2676999 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:104330632..104330919 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:2678163..2678458 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:99592178..99592462 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:2728898..2729193 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:104477442..104477726 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:2821888..2822183 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:101927931..101928218 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:2842317..2842609 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:110428083..110428367 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:2908493..2908788 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:102445596..102445880 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:3118788..3119086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:108149120..108149407 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:3351373..3351657 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:3219056..3219340 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:47878824..47879122 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:81747283..81747569 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:2853696..2853988 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:2771524..2772029 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:2118899..2119203 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:2831320..2831615 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:2836816..2837105 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:1960754..1961049 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:2666088..2666377 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:4254265..4254577 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A110PGML1671View
2Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A115PGML1671View
3GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A54.7PGML1671View
4GX1135 x GX100-2, RIL (2016)AD_ch05_At.05N/A54.7PGML1671View
Sequence
>PGML1671 ID=PGML1671; Name=PGML1671; organism=Gossypium raimondii; type=genetic_marker; length=299bp
TGTTAACGACAATTAACGCTCAGTGACTAAAATGTTACAAAACAATAACG
TAAGTGACTAAAGCGTAACATTTCAAACATAAGTGACTAATATGTAACCT
GAGACAAATAAAAATGACTATTTTGGTAATTTATCCTTAAAATTAATAAT
AATAATAATAATAACAAGTAGCATTAGTAGTCATCTAATTTATTTGAAAT
TTGAATTAATTTTATAAATTCACTCATAATTTTGTTTCATAATATTAAAA
TTTAGTTTTAAACTAAAGATTGAGTAATGAATAATGATGTGACTATGCA