PGML1671, PGML1671 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1671
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)7
Primer 1PGML1671_F: TGTTAACGACAATTAACGCTCAG
Primer 2PGML1671_R: TGCATAGTCACATCATTATTCATTAC
Product Length299
PolymorphismP_ PGML1671
Publication[view all]
CommentBAC_ID=FITC184919.b1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:2819733..2820031 +
A05chromosomeA05:97572596..97572883 -
CM018218.1chromosomeCM018218.1:2704586..2704881 +
CM018206.1chromosomeCM018206.1:99495215..99495499 -
D5_04chromosomeD5_04:47446928..47447226 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:95423700..95423984 -
D10_04chromosomeD10_04:2627808..2628112 +
CM016617.1chromosomeCM016617.1:3629969..3630273 +
scaffold178.1supercontigscaffold178.1:1032586..1032884 -
D04chromosomeD04:2373035..2373333 +
A05chromosomeA05:89273439..89273726 -
Ghir_D04chromosomeGhir_D04:2799122..2799420 +
Ghir_A05chromosomeGhir_A05:106272895..106273182 -
scaffold133_subseq_3724056_3844486_obj_A05supercontigscaffold133_subseq_3724056_3844486_obj_A05:75375..75662 +
D04chromosomeD04:2886460..2886758 +
D04chromosomeD04:2676186..2676484 +
A05chromosomeA05:106376829..106377116 -
D04chromosomeD04:2676701..2676999 +
A05chromosomeA05:104330632..104330919 -
Gbar_D04chromosomeGbar_D04:2678163..2678458 +
Gbar_A05chromosomeGbar_A05:99592178..99592462 -
D04chromosomeD04:2728898..2729193 +
A05chromosomeA05:104477442..104477726 -
CM017626.1chromosomeCM017626.1:2821888..2822183 +
CM017614.1chromosomeCM017614.1:101927931..101928218 -
CM017652.1chromosomeCM017652.1:2842317..2842609 +
CM017640.1chromosomeCM017640.1:110428083..110428367 -
CM017704.1chromosomeCM017704.1:2908493..2908788 +
CM017692.1chromosomeCM017692.1:102445596..102445880 -
D04chromosomeD04:3118788..3119086 +
A05chromosomeA05:108149120..108149407 -
Chr04chromosomeChr04:3351373..3351657 +
Chr04chromosomeChr04:3219056..3219340 +
Chr04chromosomeChr04:47878824..47879122 -
B_02chromosomeB_02:81747283..81747569 -
Chr12chromosomeChr12:2853696..2853988 +
chr12chromosomechr12:2771524..2772029 +
Chr_12chromosomeChr_12:2118899..2119203 +
Chr12chromosomeChr12:2831320..2831615 +
Chr12chromosomeChr12:2836816..2837105 +
Chr12chromosomeChr12:1960754..1961049 +
Chr12chromosomeChr12:2666088..2666377 +
E04chromosomeE04:4254265..4254577 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A110PGML1671View
2Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A115PGML1671View
3GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A54.7PGML1671View
4GX1135 x GX100-2, RIL (2016)AD_ch05_At.05N/A54.7PGML1671View
Sequence
>PGML1671 ID=PGML1671; Name=PGML1671; organism=Gossypium raimondii; type=genetic_marker; length=299bp
TGTTAACGACAATTAACGCTCAGTGACTAAAATGTTACAAAACAATAACG
TAAGTGACTAAAGCGTAACATTTCAAACATAAGTGACTAATATGTAACCT
GAGACAAATAAAAATGACTATTTTGGTAATTTATCCTTAAAATTAATAAT
AATAATAATAATAACAAGTAGCATTAGTAGTCATCTAATTTATTTGAAAT
TTGAATTAATTTTATAAATTCACTCATAATTTTGTTTCATAATATTAAAA
TTTAGTTTTAAACTAAAGATTGAGTAATGAATAATGATGTGACTATGCA