pGH286, pGH286 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	pGH286
Genbank ID	CA993850
Type	RFLP
Species	Gossypium hirsutum
Germplasm	TM-1
Source Type	cDNA
Restriction Enzyme	Pst1
Publication	[view all]

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CA993850

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D04	chromosome	D04:53382657..53383180 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
A04	chromosome	A04:79709922..79710445 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
A04	chromosome	A04:80877069..80877601 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018218.1	chromosome	CM018218.1:51281678..51282201 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
CM018205.1	chromosome	CM018205.1:78148962..78149486 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
CM018205.1	chromosome	CM018205.1:78394417..78395186 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_04	chromosome	D5_04:2804979..2805502 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
KI_2_4	chromosome	KI_2_4:2437939..2438464 -	Gossypioides kirkii genome ISU_v3	n/a
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:3199437..3199969 +	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:3473346..3473870 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
D10_04	chromosome	D10_04:49546200..49546723 +	Gossypium turneri (D10) genome NSF_v1_a2	n/a
CM016617.1	chromosome	CM016617.1:124234377..124234901 +	Gossypium australe (G2) genome CRI_v1.1	n/a
CM016617.1	chromosome	CM016617.1:124511075..124511607 -	Gossypium australe (G2) genome CRI_v1.1	n/a
Dt_chr12	chromosome	Dt_chr12:1586873..1587396 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
At_chr12	chromosome	At_chr12:51561432..51561955 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
Dt_chr12	chromosome	Dt_chr12:1944041..1944564 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
At_chr12	chromosome	At_chr12:51811021..51811553 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold1018_A04	supercontig	scaffold1018_A04:141213..141745 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D04	chromosome	D04:48316128..48316651 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
A04	chromosome	A04:60474609..60475132 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D04	chromosome	Ghir_D04:53187240..53187763 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:82171227..82171750 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:82418912..82419444 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D04	chromosome	D04:53936414..53936937 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A04	chromosome	A04:84895443..84895966 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A04	chromosome	A04:85133211..85133743 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D04	chromosome	D04:53022021..53022544 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A04	chromosome	A04:82421258..82421781 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A04	chromosome	A04:82669221..82669753 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D04	chromosome	D04:51049188..51049711 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
A04	chromosome	A04:78090572..78091095 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
A04	chromosome	A04:78338623..78339155 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold9797	supercontig	scaffold9797:277177..277946 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold4091	supercontig	scaffold4091:60349..60873 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold11233	supercontig	scaffold11233:19895..20418 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_D04	chromosome	Gbar_D04:49330819..49331342 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
Gbar_A04	chromosome	Gbar_A04:78625078..78625602 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
Gbar_A04	chromosome	Gbar_A04:78870512..78871281 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D04	chromosome	D04:54433780..54434303 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
A04	chromosome	A04:79041165..79041689 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
A04	chromosome	A04:79287116..79287885 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017626.1	chromosome	CM017626.1:51400540..51401063 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017613.1	chromosome	CM017613.1:80648306..80648829 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017613.1	chromosome	CM017613.1:80901572..80902104 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017652.1	chromosome	CM017652.1:54169828..54170351 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017639.1	chromosome	CM017639.1:89170164..89170687 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017639.1	chromosome	CM017639.1:89416148..89416680 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017704.1	chromosome	CM017704.1:51627962..51628485 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
CM017691.1	chromosome	CM017691.1:79145507..79146031 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
CM017691.1	chromosome	CM017691.1:79406259..79407028 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D04	chromosome	D04:54963255..54963778 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
A04	chromosome	A04:86180795..86181318 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
A04	chromosome	A04:86428822..86429354 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr04	chromosome	Chr04:106064894..106065418 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr04	chromosome	Chr04:106317107..106317639 -	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr04	chromosome	Chr04:107812401..107812925 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a
Chr04	chromosome	Chr04:108086341..108086873 -	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a
Chr04	chromosome	Chr04:2760007..2760530 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
B_02	chromosome	B_02:3363153..3363671 -	Gossypium anomalum (B1) genome NSF_v1	n/a
Chr12	chromosome	Chr12:51269912..51270435 +	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr12	chromosome	Chr12:51607778..51608257 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
chr12	chromosome	chr12:27349454..27349977 +	Gossypium armourianum (D2-1) genome ISU_v1	n/a
Chr_12	chromosome	Chr_12:21788930..21789453 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr12	chromosome	Chr12:51216317..51216840 +	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr12	chromosome	Chr12:51546675..51547154 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr12	chromosome	Chr12:25767805..25768328 +	Gossypium aridum (D4) genome ISU_v1	n/a
Chr12	chromosome	Chr12:19891293..19891816 +	Gossypium gossypioides (D6) genome ISU_v1	n/a
E04	chromosome	E04:102294643..102295167 +	Gossypium stocksii (E1) genome NSF_v1	n/a
E04	chromosome	E04:91338852..91339382 -	Gossypium stocksii (E1) genome NSF_v1	n/a
F04	chromosome	F04:88477674..88478198 +	Gossypium longicalyx (F1) genome NSF_v1	n/a
Chr04	chromosome	Chr04:174619680..174620193 +	Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1	n/a
Chr04	chromosome	Chr04:175026553..175027085 -	Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1	n/a
Chr12	chromosome	pGH286:1..524 . Chr12:32666010..32666533 +		n/a
Chr12	chromosome	pGH286:1..524 . Chr12:32960580..32961059 -		n/a
Chr12	chromosome	pGH286:1..524 . Chr12:1147741..1148264 -		n/a

Publications


Year	Publication
2004	Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004 Jan; 166(1):389-417.

Germplasm


Stock Name	Type
TM-1	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Deltapine-61 x Seaberry, F2 (2000)	AD_ch22_Dt.04	N/A	10.6	pGH286	View
2	Pima S-7 x Empire, F2 (2007)	AD_ch22_Dt.04	N/A	0	pGH286	View
3	Pima S-7 x n2, F2 (2007)	AD_ch22_Dt.04	N/A	0	pGH286	View
4	AD-genome wide Reference Map (2009)	AD_ch22_Dt.04	N/A	36	pGH286	View
5	AD-genome wide Reference Map (2009)	AD_ch04_At.04	N/A	28	pGH286	View
6	Sic'on x F-177, F2 (2004)	AD_ch22_Dt.04	N/A	8.6	pGH286	View
7	TM-1 x WT-936, F2 (2005)	AD_ch04_At.04	N/A	15.4	pGH286	View
8	Palmeri x K-101, F2 (2007)	AD_ch04_At.04	N/A	29.3	pGH286a	View
9	Palmeri x K-101, F2 (2007)	AD_ch22_Dt.04	N/A	6.7	pGH286b	View

Sequence

>pGH286 ID=pGH286; Name=pGH286; organism=Gossypium hirsutum; type=genetic_marker; length=524bp
AGGCATCAAATGATGTTCAAATGGTGTCTGTTTCACAACCATCTGAAAGG
AGGGAACCTCCACAGCCAGTCTCATCGAATTCAGTAAATGAAAATGGAGT
AATGACAGGTTTCTCTCTTTTTCTTCTATAAGTATCTTGTTAGAAAGTGG
AAGCCGCATTAACAGAATCTAACTCTACTGCAAAATGCTTAGCAATATCT
TATGGGAATATGTAGGGATAGATAGCGTCTGATTTAAAATATACAAAGAA
GGCTAAAAGGAACAGTTGGTTCTATAAGTTGAGTGTTTGTTATCTTTATT
GGTTTTAGATAGAGCAGGTAGGAAAATTGAAACATGATACATAATGGTGT
TTTTACAAGGTTCTGTAGAAGTATGTATTCTAAGAACCACCTGCTGGCAA
ATTGCATAGATCAATTTTGGGTGTATCTTATTGTTCTTTGCAGACAAGAT
CGAAGAAGGTAAAAGCAAGAACCATGACTCTACAGAGAGAGAAGATAACA
GTAGCATTGATAAATTAAAGCGAG

Search form

pGH286, pGH286 (genetic_marker) Gossypium hirsutum