PGML0142, PGML0142 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0142
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTT)5
Primer 1PGML0142_F: CCGGTCATTCTCAAAGGTAGTT
Primer 2PGML0142_R: TAGGGATTCGGTTGTTGGTC
Product Length263
Publication[view all]
CommentBAC_ID=FITB6822.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:20551095..20551372 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:19804912..19805188 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:18808755..18809017 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:2517061..2517338 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:19268932..19269209 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:19379819..19380094 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:19139640..19139917 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:18931758..18932035 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:19331397..19331674 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:19733935..19734211 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:19984178..19984454 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:19751564..19751841 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:20862957..20863234 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:19908754..19909031 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:19676207..19676484 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:18688931..18689193 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:18947754..18948017 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:18935409..18935666 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A44.5PGML0142View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A120.7PGML0142View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A43.55PGML0142View
Sequence
>PGML0142 ID=PGML0142; Name=PGML0142; organism=Gossypium raimondii; type=genetic_marker; length=263bp
CCGGTCATTCTCAAAGGTAGTTGTTTTTATTTTTTTCGGCTCATTTATTT
ATTTATTTATTTTTAAAGAAAACGGAAAAGAAAAGGGCAAAGGTCGTACC
CTTTTTGCGATGGAGGCACCGATTCTGATGAAAATCAATGTTTTCTGGGT
CCGGGAGTCGAAAAGGCTCAGAAAAAATATTTTTAAATTTTTCAGCCACC
GCAGACGGCGGCGCCGTTGCCGGCGACCGACAGCCGCCACGGTGACCAAC
AACCGAATCCCTA