Search SNP Genotype can be accessed through the Search menu in the header. It is a page with SNP as the default tab followed by the SSR tab. Users can search SNP genotype data by dataset name, marker name, germplasm name, and/or species.
Below is the web interface of Search SNP Genotype with examples of selected Dataset, Species, Germplasm Name, and part of the search results.
Please Note: All the search categories below can be combined and setting multiple filters will only return results matching all criteria.
1. Dataset: Users can search SNP genotype data by dataset from a dropdown list.
2. Species: Users can search for the SNP genotype dataset from a specific species by choosing from the drop-down menu. Multiple options can be selected by holding down the "Ctrl" key.
3. Germplasm Name: Users can search for an SNP genotype dataset from a specific germplasm by choosing from the drop-down menu. Multiple options can be selected by holding down the "Ctrl" key.
4. SNP: Users can search for an SNP genotype dataset that uses a specific marker by typing the marker name in the text box. Users can search for an exact match, that contains, starts with, or ends with the input, by selecting the desired option from the drop-down menu.
5. Genome: Users can search SNP genotype data by the anchored position of SNPs in one of the whole genome sequences. Choose a genome in the drop-down menu next to 'Genome' then the corresponding chromosome or scaffold names will be dynamically generated in the 'Chr/Scaffold' drop-down menu. Choose any option and then type in the position in bp in the text boxes.
6. Search Result: Results are returned in a table that can be downloaded from the entire table or the table with polymorphism data only.
Click on the SSR tab to start an SSR Genotype search.
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If you have any questions/comments/feedback about this search page, please let us know via the contact form.