rna-gnl|WGS:JAIQCV|GS07G_29050

Transcript Overview
Namerna-gnl|WGS:JAIQCV|GS07G_29050
Unique Namerna-GS07G_29050_E1_ZSTU_v1
TypemRNA
OrganismGossypium stocksii (Cotton (G. stocksii))
Sequence length237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:66932630..66933137 +Gossypium stocksii (E1) genome ZSTU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
b1jgszL0360Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
awgszL0381Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awgszL0391Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
b1jgszL0380Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jgszL0382Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
adgszL0381Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgszL0395Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
awgszL0744Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
b1jgszL0747Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
adgszL0977Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgszL1427Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgszL2048Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgszL2062Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgszL2066Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
d3kgszL0286Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
d3dgszL0711Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
d3kgszL0998Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
dfigszL0166Gossypium aridum (D4) genome ISU_v1Gossypium aridum
d9igszL0466Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9igszL0842Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dfigszL0842Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dqigszL0184Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
doogszL0498Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doogszL0884Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
dqigszL0964Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dttgszL0195Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
fngszL0359Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL0366Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dttgszL0563Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
gbigszL0418Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbigszL0428Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbigszL0431Gossypium bickii (G1) genome JZU_v1Gossypium bickii
fngszL0712Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gdgszL0371Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdgszL0388Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gbigszL0940Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gdgszL0961Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdgszL1411Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdgszL2060Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdgszL2075Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdgszL2078Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gosgszL0330Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grbgszL0308Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbgszL0317Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gosgszL0347Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grogszL0388Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL0406Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grhgszL0323Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhgszL0328Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grbgszL0455Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbgszL0657Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gosgszL0658Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grhgszL0697Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
gszgszL530Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgszL721Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgtiR1167Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR1234Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR1240Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszhgsR1207Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR1249Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR1260Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR1307Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhnR1577Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1589Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1626Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1651Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1717Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1719Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhwR1178Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR1200Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR1244Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszuhR1189Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gszuhR1235Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR1215Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gszuhR1246Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR1255Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gsztoR1266Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gszuhR1291Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR1308Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
e1hgszL0324Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
e1hgszL0339Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
e1hgszL0673Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii

Orthologs
Gene/TranscriptAssemblySpecies
D5.v1.pred_00006387-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
EVM0032285.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Gh_D11G2222Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
rna-gnl|WGS_VKGI|Godar.A02G161800.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGE|Gotom.A02G162100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gbi02G0498.1Gossypium bickii (G1) genome JZU_v1Gossypium bickii
Gohir.D11G225500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rna-gnl|WGS:JABEZX|Golob_00035565-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
gene-E1A91_A11G215500v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gohir.A11G197042.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghe11G25960Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGI|Godar.D11G255000.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.A11G210100.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gohir.A02G133200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rna-gnl|WGS:JABFAD|Gohar_00007594-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
rna-gnl|WGS_VKGI|Godar.D03G052100.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:JABFAA|Goari_00035337-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
Gh_D03G0418Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
rna-gnl|WGS:JABFAF|Goshw_00007624-RAGossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
Gohir.D03G044600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gbi11G2809.1Gossypium bickii (G1) genome JZU_v1Gossypium bickii
rna-gnl|WGS:JABEZX|Golob_00007311-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
gene-E1A91_A02G150900v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABFAA|Goari_00007357-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
gene-E1A91_D03G048500v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:VKDL|Gobar.D11G240900.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
EVM0011443.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Gar02G16190Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS:JABFAB|Goklo_00008000-RAGossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
Grot_11G011510.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
rna-gnl|WGS:JABFAD|Gohar_00037241-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
Gh_A02G1277Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
EVM0004159.1Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
Golon.002G050800-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
rna-gnl|WGS_VKGE|Gotom.D03G050900.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGI|Godar.A11G226200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:JABEZV|Golax_00006894-RAGossypium laxum (D9) genome ISU_v1Gossypium laxum
evm.model.Goano02G0503Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
Gar11G25820Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.D03G046900.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Grai_02G004950.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
gene-E1A91_D11G248000v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Ghe02G17680Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Grai_11G014700.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
D5.v1.pred_00039093-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS:VKDL|Gobar.A02G146000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:JAIQCV|GS03G_05350Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
Gosto.002G045400-1Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
Gosto.011G223700-1Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
Gsto_02G004920.1Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
Gsto_11G025320.1Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-J1N35_022578gene-J1N35_022578_E1_ZSTU_v1Gossypium stocksiigene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-gnl|WGS:JAIQCV|GS07G_29050-1exon-GS07G_29050-1_E1_ZSTU_v1Gossypium stocksiiexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-KAH1082817.1cds-KAH1082817.1_E1_ZSTU_v1Gossypium stocksiiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl|WGS:JAIQCV|GS07G_29050rna-GS07G_29050_E1_ZSTU_v1-proteinGossypium stocksiipolypeptide
rna-GS07G_29050_E1_ZSTU_v1rna-GS07G_29050_E1_ZSTU_v1Gossypium stocksiipolypeptide


Homology
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|KAB2058079.1| (hypothetical protein ES319_A11G210100v1 [Gossypium barbadense] >gb|KAG4175676.1| hypothetical protein ERO13_A11G197042v2 [Gossypium hirsutum] >gb|KAG8478675.1| hypothetical protein CXB51_028517 [Gossypium anomalum] >gb|TYG94918.1| hypothetical protein ES288_A11G226200v1 [Gossypium darwinii] >gb|TYI01767.1| hypothetical protein ES332_A11G224200v1 [Gossypium tomentosum] >gb|TYJ10564.1| hypothetical protein E1A91_A11G215500v1 [Gossypium mustelinum])

HSP 1 Score: 156.762 bits (395), Expect = 5.296e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTG IE+RKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGTIEERKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|MBA0686995.1| (hypothetical protein [Gossypium aridum] >gb|MBA0716029.1| hypothetical protein [Gossypium laxum] >gb|MBA0860817.1| hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 155.221 bits (391), Expect = 2.136e-47
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGT GAIE+RKP+VSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTIGAIEERKPSVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|KAB2005014.1| (hypothetical protein ES319_D11G240900v1 [Gossypium barbadense] >gb|KAG4121725.1| hypothetical protein ERO13_D11G225500v2 [Gossypium hirsutum] >gb|KJB44262.1| hypothetical protein B456_007G243000 [Gossypium raimondii] >gb|MBA0618506.1| hypothetical protein [Gossypium davidsonii] >gb|MBA0653888.1| hypothetical protein [Gossypium klotzschianum] >gb|MBA0803398.1| hypothetical protein [Gossypium harknessii] >gb|TYG46416.1| hypothetical protein ES288_D11G255000v1 [Gossypium darwinii] >gb|TYI56948.1| hypothetical protein E1A91_D11G248000v1 [Gossypium mustelinum])

HSP 1 Score: 155.221 bits (391), Expect = 2.184e-47
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIE+RKPTVSGRNKVHPGNFTSL DSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEERKPTVSGRNKVHPGNFTSLLDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|MBA0561102.1| (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 154.451 bits (389), Expect = 3.824e-47
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGT GAIE+RKPTVSGRNKVHPGNF SLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTIGAIEERKPTVSGRNKVHPGNFISLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|EOX92223.1| (Uncharacterized protein TCM_001203 [Theobroma cacao])

HSP 1 Score: 109.768 bits (273), Expect = 2.074e-29
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDS-AGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEE V+RGET  TTG  E++  T+ GR+KVHPGNFTS  DS AGNE  G+ NAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGET--TTGIEERKAGTIVGRSKVHPGNFTSPADSAAGNESLGTGNAA 77
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|KAE8728269.1| (hypothetical protein F3Y22_tig00004630pilonHSYRG00058 [Hibiscus syriacus])

HSP 1 Score: 93.2041 bits (230), Expect = 5.986e-23
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 0 
Query:    2 SSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPT--VSGRNKVHPGNFTSLPDSAGNECQGSSNA 77
            +SIGASCA+VYLMRK QKEKMKRMEEE   RGE S   GAIE++KPT  V GR+KVHPGNFTS  D      QGS+NA
Sbjct:    3 TSIGASCAKVYLMRKHQKEKMKRMEEERKSRGENS---GAIEEKKPTTVVGGRSKVHPGNFTSTADQTQ---QGSNNA 74
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|QCD98682.1| (hypothetical protein DEO72_LG6g3404 [Vigna unguiculata])

HSP 1 Score: 73.1738 bits (178), Expect = 5.118e-15
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVS--GRNKVHPGN 59
            MSSIGA  AE+Y++ KRQKEKMKRMEEE VRRGE SG     E+RK + S  G+NKVHPG+
Sbjct:    1 MSSIGARSAEIYILEKRQKEKMKRMEEERVRRGEVSG-----EERKVSSSGVGKNKVHPGS 56
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|MBA0794023.1| (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 72.7886 bits (177), Expect = 1.004e-14
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKP--TVSGRNKVHPGNFTSLPDSAG---NECQGSSN 76
            MSSIGASCAEVY+M+KRQKEKMKR EEE   RG    T     K +P   V GR+KVHPG   ++PDSA    +E QGS +
Sbjct:    1 MSSIGASCAEVYVMQKRQKEKMKRTEEEKASRGVEEST-----KPQPCTVVVGRSKVHPG--PAVPDSASVSVSENQGSGD 74
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: ref|XP_007163620.1| (hypothetical protein PHAVU_001G249700g [Phaseolus vulgaris] >gb|ESW35614.1| hypothetical protein PHAVU_001G249700g [Phaseolus vulgaris])

HSP 1 Score: 72.4034 bits (176), Expect = 1.139e-14
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVS--GRNKVHPGN 59
            MSSIGA  AE+Y+M KRQKEKMKRMEEE VRRGE S      E+RK T S  G+NK+HPG+
Sbjct:    1 MSSIGARSAEIYIMEKRQKEKMKRMEEERVRRGEVSS-----EERKVTSSSVGKNKIHPGS 56
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Match: gb|MBA0551904.1| (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 72.0182 bits (175), Expect = 2.044e-14
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKP--TVSGRNKVHPGNFTSLPDSAG---NECQGSSN 76
            MSS+GASCAEVY+M+KRQKEKMKR EEE   RG    T     K +P   V GR+KVHPG   ++PDSA    +E QGS +
Sbjct:    1 MSSVGASCAEVYVMQKRQKEKMKRTEEEKASRGVEEST-----KPQPCTVVVGRSKVHPG--PAVPDSASVSVSENQGSGD 74
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A5D2X9T8_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G215500v1 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.548e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTG IE+RKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGTIEERKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A5D2EPU0_GOSDA (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A11G226200v1 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.548e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTG IE+RKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGTIEERKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A5D2NCK3_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G224200v1 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.548e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTG IE+RKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGTIEERKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A2P5WEM7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A11G210100v1 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.548e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTG IE+RKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGTIEERKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A7J8ZXL4_9ROSI (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_014896 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.028e-47
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGT GAIE+RKP+VSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTIGAIEERKPSVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A7J8XI69_GOSAI (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_014558 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.028e-47
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGT GAIE+RKP+VSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTIGAIEERKPSVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A7J9LQ89_GOSSC (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_021582 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.028e-47
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGT GAIE+RKP+VSGRNKVHPGNFTSLPDSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTIGAIEERKPSVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A7J9H1C8_9ROSI (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_013608 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.051e-47
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIE+RKPTVSGRNKVHPGNFTSL DSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEERKPTVSGRNKVHPGNFTSLLDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A5D2SYF8_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G248000v1 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.051e-47
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIE+RKPTVSGRNKVHPGNFTSL DSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEERKPTVSGRNKVHPGNFTSLLDSAGNECQGSSNAA 78
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Match: A0A7J8UTP3_9ROSI (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_020991 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.051e-47
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVSGRNKVHPGNFTSLPDSAGNECQGSSNAA 78
            MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIE+RKPTVSGRNKVHPGNFTSL DSAGNECQGSSNAA
Sbjct:    1 MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEERKPTVSGRNKVHPGNFTSLLDSAGNECQGSSNAA 78
The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. NCBI nr
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gb|KAB2058079.1|5.296e-4897.44hypothetical protein ES319_A11G210100v1 [Gossypium... [more]
gb|MBA0686995.1|2.136e-4796.15hypothetical protein [Gossypium aridum] >gb|MBA071... [more]
gb|KAB2005014.1|2.184e-4797.44hypothetical protein ES319_D11G240900v1 [Gossypium... [more]
gb|MBA0561102.1|3.824e-4796.15hypothetical protein [Gossypium lobatum][more]
gb|EOX92223.1|2.074e-2974.68Uncharacterized protein TCM_001203 [Theobroma caca... [more]
gb|KAE8728269.1|5.986e-2367.95hypothetical protein F3Y22_tig00004630pilonHSYRG00... [more]
gb|QCD98682.1|5.118e-1565.57hypothetical protein DEO72_LG6g3404 [Vigna unguicu... [more]
gb|MBA0794023.1|1.004e-1456.79hypothetical protein [Gossypium harknessii][more]
ref|XP_007163620.1|1.139e-1465.57hypothetical protein PHAVU_001G249700g [Phaseolus ... [more]
gb|MBA0551904.1|2.044e-1455.56hypothetical protein [Gossypium lobatum][more]
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BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5D2X9T8_GOSMU2.548e-4897.44Uncharacterized protein OS=Gossypium mustelinum OX... [more]
A0A5D2EPU0_GOSDA2.548e-4897.44Uncharacterized protein OS=Gossypium darwinii OX=3... [more]
A0A5D2NCK3_GOSTO2.548e-4897.44Uncharacterized protein OS=Gossypium tomentosum OX... [more]
A0A2P5WEM7_GOSBA2.548e-4897.44Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A7J8ZXL4_9ROSI1.028e-4796.15Uncharacterized protein OS=Gossypium laxum OX=3428... [more]
A0A7J8XI69_GOSAI1.028e-4796.15Uncharacterized protein OS=Gossypium aridum OX=342... [more]
A0A7J9LQ89_GOSSC1.028e-4796.15Uncharacterized protein OS=Gossypium schwendimanii... [more]
A0A7J9H1C8_9ROSI1.051e-4797.44Uncharacterized protein OS=Gossypium harknessii OX... [more]
A0A5D2SYF8_GOSMU1.051e-4797.44Uncharacterized protein OS=Gossypium mustelinum OX... [more]
A0A7J8UTP3_9ROSI1.051e-4797.44Uncharacterized protein OS=Gossypium klotzschianum... [more]
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BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-gnl|WGS:JAIQCV|GS07G_29050 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for ZSTU v1.0 Gossypium stocksii (E1) proteins
Date Performed: 2022-12-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..78
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..67

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-GS07G_29050_E1_ZSTU_v1 ID=rna-GS07G_29050_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS07G_29050; organism=Gossypium stocksii; type=mRNA; length=237bp
ATGTCTTCTATTGGAGCTAGCTGCGCTGAGGTTTATCTGATGCGTAAGCG
CCAGAAGGAAAAGATGAAGAGAATGGAAGAAGAAAGTGTAAGGAGAGGGG
AAACCAGTGGTACTACTGGTGCCATTGAAAAGAGAAAACCTACTGTTTCC
GGAAGGAATAAGGTTCACCCTGGGAATTTCACTTCCCTTCCAGACTCTGC
TGGGAACGAATGCCAGGGGTCCAGCAATGCAGCATAG
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protein sequence of rna-GS07G_29050_E1_ZSTU_v1

>rna-GS07G_29050_E1_ZSTU_v1 ID=rna-GS07G_29050_E1_ZSTU_v1; Name=rna-GS07G_29050_E1_ZSTU_v1; organism=Gossypium stocksii; type=polypeptide; length=78bp
MSSIGASCAEVYLMRKRQKEKMKRMEEESVRRGETSGTTGAIEKRKPTVS
GRNKVHPGNFTSLPDSAGNECQGSSNAA
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mRNA from alignment at Chr07:66932630..66933137+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-GS07G_29050_E1_ZSTU_v1 ID=rna-GS07G_29050_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS07G_29050; organism=Gossypium stocksii; type=mRNA; length=508bp; location=Sequence derived from: Chr07:66932630..66933137+ (Gossypium stocksii
AATTATTCTCCATTGTTTTTGAGTTGTGTTGTTATCATGTCTTCTATTGG
AGCTAGCTGCGCTGAGGTTTATCTGATGCGTAAGCGCCAGAAGGAAAAGA
TGAAGAGAATGGAAGAAGAAAGTGTAAGGAGAGGGGAAACCAGTGGTACT
ACTGGTGCCATTGAAAAGAGAAAACCTACTGTTTCCGGAAGGAATAAGGT
TCACCCTGGGAATTTCACTTCCCTTCCAGACTCTGCTGGGAACGAATGCC
AGGGGTCCAGCAATGCAGCATAGTCAATTACCTATTTCTGCACCCTCTCG
TTATgatattatataacttatttcaTACACTATCCATAAGTAAATGGAAA
GAGTGACATGTAATTGTAAGGTATATAGTAGAAGACAAAATAAAACACAT
ATCACTTTTTCAACTAtgtttatgaaatttaaaaactttatttacagtgt
ataaaataattacatgtatTAATGCTTAATTAGCTGTGTTATTGTGTTTG
ATCATTTA
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Coding sequence (CDS) from alignment at Chr07:66932630..66933137+

>rna-GS07G_29050_E1_ZSTU_v1 ID=rna-GS07G_29050_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS07G_29050; organism=Gossypium stocksii; type=CDS; length=237bp; location=Sequence derived from: Chr07:66932630..66933137+ (Gossypium stocksii
ATGTCTTCTATTGGAGCTAGCTGCGCTGAGGTTTATCTGATGCGTAAGCG
CCAGAAGGAAAAGATGAAGAGAATGGAAGAAGAAAGTGTAAGGAGAGGGG
AAACCAGTGGTACTACTGGTGCCATTGAAAAGAGAAAACCTACTGTTTCC
GGAAGGAATAAGGTTCACCCTGGGAATTTCACTTCCCTTCCAGACTCTGC
TGGGAACGAATGCCAGGGGTCCAGCAATGCAGCATAG
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