A1.A1_06G217900-1

Transcript Overview
NameA1.A1_06G217900-1
Unique NameA1.A1_06G217900-1_USDA-A1_v1
TypemRNA
OrganismGossypium herbaceum (Cotton (G. herbaceum))
Sequence length669
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A1_06chromosomeA1_06:129895470..129896324 -Gossypium herbaceum (A1) 'Wagad' genome USDA_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
aouawR1077Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
aouawR1094Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
aoud3dR1087Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
aouawR1120Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
aoud3dR1130Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
aoud3dR1131Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
aoub1jR1115Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aoub1jR1153Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aoud8iR0789Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
aoud3kR0857Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
aoud9iR0813Gossypium laxum (D9) genome ISU_v1Gossypium laxum
aoud9iR0837Gossypium laxum (D9) genome ISU_v1Gossypium laxum
aoudfiR0806Gossypium aridum (D4) genome ISU_v1Gossypium aridum
aoudsiR694Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
aoudooR0822Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
aoudqiR0815Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
aoudooR0847Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
aoudtoR0763Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
aoudttR0804Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
aoufnR1061Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
aoufnR1076Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
aoufnR1103Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
aougauR0964Gossypium australe (G2) genome CRI_v1.1Gossypium australe
aougkR0906Gossypioides kirkii genome ISU_v3Gossypioides kirkii
aougkR0942Gossypioides kirkii genome ISU_v3Gossypioides kirkii
aougkR0952Gossypioides kirkii genome ISU_v3Gossypioides kirkii
aougdR1209Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
aougdR1263Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
aougrbR1037Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
aougosR1102Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
aougrbR1050Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
aougosR1137Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
aougrbR1073Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
aougrbR1094Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
aougrhR1090Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
aougrhR1104Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
aougrhR1130Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
aougroR1225Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
aougroR1244Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
aougtiR1076Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
aougtiR1115Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
aougtiR1116Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
aougtbR1078Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
aougtbR1093Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
aougtbR1128Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
aouhnR1461Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhnR1472Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhnR1489Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhnR1527Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhnR1556Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhnR1559Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aouhwR1034Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aouhwR1072Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aoutoR1095Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aoutoR1145Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aouuhR1074Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aouuhR1126Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aoug2bR1339Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
aoug2bR1366Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
aoug2bR1403Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
aoug2bR1426Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
aougbmR1313Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
aougbmR1342Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
aougbmR1402Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
aouazbR1348Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
aouazbR1377Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
aouazbR1413Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
aouazbR1437Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
aouazkR1310Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
aouazkR1321Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
aouazkR1338Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
aouyumR1308Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
aouazkR1375Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
aouazkR1398Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
aouyumR1334Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
aouyumR1371Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
aouyumR1395Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
aoug7iR1332Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
aoug7iR1357Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
aoug7iR1394Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
aoug7iR1410Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
aoug7iR1414Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
aoug6bR1324Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
aoug6bR1335Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
aoug6bR1351Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
aoug6bR1385Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
aoug6bR1410Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
aoug7bR1320Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
aoug7bR1348Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
aoug7bR1384Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
aoug7bR1408Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
aouj1hR1317Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
aouj1hR1345Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
aouj1hR1383Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
aouj1hR1403Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
aoucegR1338Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
aoucegR1375Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
aoucegR1432Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
aoukocR1027Kokia cookei 'WAI 16c69' genome ISU_v1Kokia cookei
aoukocR1075Kokia cookei 'WAI 16c69' genome ISU_v1Kokia cookei
aoukocR1082Kokia cookei 'WAI 16c69' genome ISU_v1Kokia cookei
aoukoaR1003Kokia kauaiensis 'WAI 19s9' genome ISU_v1Kokia kauaiensis
aoukoaR1044Kokia kauaiensis 'WAI 19s9' genome ISU_v1Kokia kauaiensis
aoukoaR1049Kokia kauaiensis 'WAI 19s9' genome ISU_v1Kokia kauaiensis
aoukodR1014Kokia drynarioides genome ISU_v1Kokia drynarioides
aoukodR1055Kokia drynarioides genome ISU_v1Kokia drynarioides
aoukodR1059Kokia drynarioides genome ISU_v1Kokia drynarioides
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
A1.A1_06G217900A1.A1_06G217900_USDA-A1_v1Gossypium herbaceumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
A1.A1_06G217900-1A1.A1_06G217900-1_USDA-A1_v1-proteinGossypium herbaceumpolypeptide
A1.A1_06G217900-1_USDA-A1_v1A1.A1_06G217900-1_USDA-A1_v1Gossypium herbaceumpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
A1.A1_06G217900-1:cdsA1.A1_06G217900-1:cds_USDA-A1_v1Gossypium herbaceumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
A1.A1_06G217900-1:exon:3054A1.A1_06G217900-1:exon:3054_USDA-A1_v1Gossypium herbaceumexon
A1.A1_06G217900-1:exon:3055A1.A1_06G217900-1:exon:3055_USDA-A1_v1Gossypium herbaceumexon
A1.A1_06G217900-1:exon:3056A1.A1_06G217900-1:exon:3056_USDA-A1_v1Gossypium herbaceumexon


Homology
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: ref|XP_040952679.1| (uncharacterized protein LOC121219101 [Gossypium hirsutum])

HSP 1 Score: 255.758 bits (652), Expect = 5.965e-80
Identity = 126/210 (60.00%), Postives = 163/210 (77.62%), Query Frame = 0 
Query:   14 NWFFSAKKISAMMVSYRKTLITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            +W  S+  +S  ++++   LI    +++I   ++     ++TS+LMFYRRALHSQ KGDLSM+EFLMK+K YC NLA+  E+ISEHEHVTTILNG+  EYE  +SIIVASQ PYS+Q+V++ML+DAE+ QQVV++E+P SANLVS++  ES  ++F P+YRPSASRG GRG  S  R QCQLCGKTGHLVD CYYRF+ASYKS  Y+PPP
Sbjct:  100 SWLLSS--VSQAILAH---LIGLDTSAQIWNAIVSLYGSKSTSRLMFYRRALHSQCKGDLSMREFLMKVKLYCDNLASYREVISEHEHVTTILNGLLSEYESIVSIIVASQVPYSLQSVVTMLVDAESRQQVVMAEIPSSANLVSQQPAESVPSEFVPSYRPSASRGCGRGRFSGTRFQCQLCGKTGHLVDYCYYRFDASYKSNNYKPPP 304
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: ref|XP_017640035.1| (PREDICTED: uncharacterized protein LOC108481406 [Gossypium arboreum])

HSP 1 Score: 247.669 bits (631), Expect = 2.409e-73
Identity = 123/191 (64.40%), Postives = 149/191 (78.01%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     +TTS+LMFYRRALHSQRKGDL+MKEFLMKIK+YC NLA+C EIISE EHVT ILNG+P EYE  ISIIVA+Q PYSVQNV +MLID EA QQV+++EVP  ANLVS++   S  N  + +YRP  +RGRG G  S+ R+QCQLCGK GHLVD+CY+RF+ASYKS GYR PP
Sbjct:  105 LIGLDTSAQIWNAIVSLYGSKTTSRLMFYRRALHSQRKGDLTMKEFLMKIKSYCDNLASCREIISECEHVTAILNGLPSEYESVISIIVANQLPYSVQNVTTMLIDTEAQQQVIMTEVPTLANLVSQQESNSDSNSCSSSYRPFTTRGRGHGRSSKGRVQCQLCGKMGHLVDRCYHRFDASYKSMGYRSPP 295
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0753075.1| (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 236.113 bits (601), Expect = 4.818e-73
Identity = 116/192 (60.42%), Postives = 147/192 (76.56%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTL-NDFAPTYRP-SASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPP 221
            LI    ++KI   ++     +TTS+LMFYRR LHSQRKGD+SMKEFLMK+K+ C NLA+CGE+ SEHEHVT ILNG+P EYE  ISI+ ASQ PY+VQ V SML+D E  QQV   ++  SAN+VS +S+E+++ N   P YRP SASRGRG+G  S +RIQCQLCGK+GHLVD+CYY F++S+KS  +RPP
Sbjct:   99 LIGMDTSAKIWNAIVTLYGGKTTSKLMFYRRYLHSQRKGDVSMKEFLMKVKSCCDNLASCGEVSSEHEHVTAILNGLPSEYESVISIVTASQVPYTVQGVTSMLLDTETRQQVTNCDISSSANVVSHQSLETSVDNGSTPAYRPSSASRGRGKGRFSNSRIQCQLCGKSGHLVDRCYYHFDSSFKSNNFRPP 290
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0823951.1| (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 234.187 bits (596), Expect = 3.550e-72
Identity = 114/191 (59.69%), Postives = 145/191 (75.92%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSA-SRGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     ++TS+LMFYRRALHSQRKGDLS++EFLMKIK +C +LA CGE+ISEHEH+T +LNG+P EY+P ISIIVAS T YS+Q+V++MLIDAE+ QQ ++ E P SANLVS++S +ST +   P YRPSA         S  R QCQLCGK GHLVD+CYYRF++SYKST  RPPP
Sbjct:  115 LIGLDTSAQIWNAIVSLYGSKSTSRLMFYRRALHSQRKGDLSIREFLMKIKCFCDSLAGCGEVISEHEHITAVLNGLPSEYKPIISIIVASPTLYSLQSVMTMLIDAESRQQALMIEAPSSANLVSQQSADSTTDRSNPIYRPSASRGRGRGRSSSTRFQCQLCGKIGHLVDRCYYRFDSSYKSTNMRPPP 305
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|KAG8483528.1| (hypothetical protein CXB51_022374 [Gossypium anomalum])

HSP 1 Score: 230.72 bits (587), Expect = 4.534e-71
Identity = 118/191 (61.78%), Postives = 145/191 (75.92%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSAS-RGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     +TTS+LMFYRRALHSQRKGD +MK FL+KIK+YC NLA+CGEIISE EHVT ILNG+P EYE  ISII+ASQ PYS+QNVI MLID EA QQV+V+EV  SANLVS+++ +S  N  + +YRPS +        SR R+QCQLC K GHL+DQCY+RF+ASYKS GYRP P
Sbjct:  151 LIGLDTSAQIWNAIVSLYGSKTTSRLMFYRRALHSQRKGDFTMKGFLIKIKSYCDNLASCGEIISEREHVTAILNGLPSEYESVISIIMASQLPYSLQNVIIMLIDTEARQQVMVTEVLASANLVSQQASDSDSNSRSLSYRPSITRGRGRGRSSRNRVQCQLCRKMGHLIDQCYHRFDASYKSMGYRPSP 341
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0786924.1| (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 231.106 bits (588), Expect = 1.023e-70
Identity = 115/193 (59.59%), Postives = 146/193 (75.65%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFA-PTYRP-SASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    ++KI   ++     +TTS+LMFYRR+LH QRKGD+SMKEFLMK+K+ C NLA+CGE+ISEHEHVT ILN +  EYE  ISI+ ASQ PY+VQ V SML+D E  QQV+  ++  S N+VS +S E+ +++ + P YRP SASRG GRG  S +RIQCQLCGK GHLVD+CYYRF++SYKS  +RPPP
Sbjct:   99 LIGMDTSAKIWNAIVTLYGSKTTSKLMFYRRSLHYQRKGDVSMKEFLMKVKSCCDNLASCGEVISEHEHVTAILNRLSSEYESVISIVTASQVPYTVQGVTSMLLDTETRQQVINCDISSSENVVSHQSSETYVDNGSIPAYRPSSASRGCGRGRSSNSRIQCQLCGKAGHLVDRCYYRFDSSYKSNNFRPPP 291
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0729805.1| (hypothetical protein [Gossypium laxum])

HSP 1 Score: 232.261 bits (591), Expect = 1.440e-70
Identity = 128/256 (50.00%), Postives = 164/256 (64.06%), Query Frame = 0 
Query:    6 SQSVGVADNWFFSAKKISAMM-----VSYRKTLITFAL-------------------------------NSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTL-NDFAPTYRP--SASRGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            S + GV DN  FS KKIS ++     + +R+ ++  AL                               ++KI   ++     +TTS+LMFYRR+LHSQRKGD+SMKEFLMK+K+ C NLA+CGEIISEHEHVT ILNG+PPEYE  ISII ASQ PY+VQ V SML+D E  QQV+  ++  SAN+VS +S E++  ND  P YRP  ++        S +RIQCQLCGK GHLVD+CYYRF++SYKS  +RPPP
Sbjct:    4 SATDGVVDNRLFSTKKISVLLDDNTYLLWRQQVL-LALKAHKLQGFLDVQQVPPIQFISDGNGGLQANPDAKIWNAIVALYGSKTTSKLMFYRRSLHSQRKGDVSMKEFLMKVKSCCDNLASCGEIISEHEHVTAILNGLPPEYESVISIITASQVPYTVQEVTSMLLDTETRQQVINGDISSSANVVSHQSSETSADNDAIPAYRPSSTSRGRGRGRSSNSRIQCQLCGKAGHLVDRCYYRFDSSYKSNNFRPPP 258
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: ref|XP_017632772.1| (PREDICTED: uncharacterized protein LOC108475315 [Gossypium arboreum])

HSP 1 Score: 241.506 bits (615), Expect = 2.616e-69
Identity = 126/217 (58.06%), Postives = 154/217 (70.97%), Query Frame = 0 
Query:    7 QSVGVADNWFFSAKKISAMMVSYRKTLITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSAS-RGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            Q  G   +W  S+   S +       LI    +++I   ++     QTTS+LMFYRRALHSQRKGDL MKEFLMKIK+YC NLA+CGEIISE EHVTTILNG+P EYE  ISIIVASQ PYSV NV +MLID E  QQ +++EVP SANLVS+++ ++  N  + +YRPS +        S  R+QCQLCGK  HLVD+CY+RF+ASYKSTGYRPPP
Sbjct:   79 QQDGAIASWLLSSVSQSVL-----PHLIGLDTSAQIWNAIVSLYGSQTTSRLMFYRRALHSQRKGDLPMKEFLMKIKSYCDNLASCGEIISEREHVTTILNGLPSEYESVISIIVASQHPYSVHNVTNMLIDTETRQQAIMTEVPASANLVSQQTSDADSNGRSSSYRPSITRGRGRGRSSGGRVQCQLCGKLEHLVDRCYHRFDASYKSTGYRPPP 290
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0796579.1| (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 218.009 bits (554), Expect = 4.113e-68
Identity = 108/185 (58.38%), Postives = 141/185 (76.22%), Query Frame = 0 
Query:   41 KIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVEST-LNDFAPTYRPSASR---GRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPP 221
            K V+ L G    +TTS+LMFYRR LHSQRKG+LSMK+FL+KIK  C +L +CGEIISEHEH+T ILNG+ P+YE  I+I+ +SQ PY+VQ V SML+D EA QQ+V +E+  SAN+VS +S +ST  +   P+Y+PS++    GR R  S ++IQCQLCGK GHLVD+ Y+RF++SYKS  YRPP
Sbjct:    9 KAVVTLYG---SKTTSKLMFYRRTLHSQRKGELSMKDFLVKIKGCCDHLTSCGEIISEHEHITAILNGLSPDYESVITIVTSSQVPYTVQGVTSMLLDTEARQQLVSTEISSSANMVSHQSSDSTGFSGSIPSYQPSSTIWGCGRSRS-SHSKIQCQLCGKAGHLVDRWYHRFDSSYKSNNYRPP 189
[Close]
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Match: gb|MBA0875988.1| (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 219.164 bits (557), Expect = 1.673e-67
Identity = 114/188 (60.64%), Postives = 140/188 (74.47%), Query Frame = 0 
Query:   22 ISAMMVSYRKTLITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSAS-RGRGRGH-SRARIQCQLCGKTGHLVDQCYY 207
            IS++  +    LI    ++KI   ++     +TTS+LM YRRALHSQRKG+L MKEFLMK+K  C NLA+CGEII EHEH+T ILNG+PP+YE  I+II ASQ PY+VQ V SML+D EA QQVV ++V  SANLVS  +V S   D  PTY+PS+S RGRGRGH S +RIQCQLCGK GHLVD+CY+
Sbjct:   88 ISSISQTVLPHLIRMDTSAKIWNAVVTLFGSKTTSKLMAYRRALHSQRKGELGMKEFLMKVKGCCDNLASCGEIIGEHEHITAILNGLPPDYESVITIITASQIPYTVQGVTSMLLDTEARQQVVRTKVSSSANLVS--NVSSDDPDSLPTYQPSSSARGRGRGHSSSSRIQCQLCGKAGHLVDRCYH 273
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A1U8IT06_GOSHI (uncharacterized protein LOC107900016 OS=Gossypium hirsutum OX=3635 GN=LOC107900016 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.121e-75
Identity = 120/191 (62.83%), Postives = 151/191 (79.06%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++ F   ++TS+LMFYRRALHSQRKGDLSM+EFLMK+K +C NLA CGEIISEHEH+T ILNG+P EYE  + IIVAS T YS+Q+V++ML+DAE+ QQV+++EVP SANL S++  +S   +  P YRPS  RGRGRG  S  R+QCQLCGK GHLVD+CYYRF++SYKST YRPPP
Sbjct:  115 LIGLDTSAQIWNAIVSFYGSKSTSRLMFYRRALHSQRKGDLSMREFLMKVKGFCDNLAGCGEIISEHEHITAILNGLPAEYESIVFIIVASPTLYSLQSVMTMLVDAESRQQVLLAEVPSSANLASQQLTDSATKNSTPVYRPSNPRGRGRGRSSNTRLQCQLCGKLGHLVDRCYYRFDSSYKSTNYRPPP 305
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A6P4Q974_GOSAR (uncharacterized protein LOC108481406 OS=Gossypium arboreum OX=29729 GN=LOC108481406 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.159e-73
Identity = 123/191 (64.40%), Postives = 149/191 (78.01%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     +TTS+LMFYRRALHSQRKGDL+MKEFLMKIK+YC NLA+C EIISE EHVT ILNG+P EYE  ISIIVA+Q PYSVQNV +MLID EA QQV+++EVP  ANLVS++   S  N  + +YRP  +RGRG G  S+ R+QCQLCGK GHLVD+CY+RF+ASYKS GYR PP
Sbjct:  105 LIGLDTSAQIWNAIVSLYGSKTTSRLMFYRRALHSQRKGDLTMKEFLMKIKSYCDNLASCREIISECEHVTAILNGLPSEYESVISIIVANQLPYSVQNVTTMLIDTEAQQQVIMTEVPTLANLVSQQESNSDSNSCSSSYRPFTTRGRGHGRSSKGRVQCQLCGKMGHLVDRCYHRFDASYKSMGYRSPP 295
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A7J9CXU3_GOSGO (Uncharacterized protein (Fragment) OS=Gossypium gossypioides OX=34282 GN=Gogos_021375 PE=4 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.318e-73
Identity = 116/192 (60.42%), Postives = 147/192 (76.56%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTL-NDFAPTYRP-SASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPP 221
            LI    ++KI   ++     +TTS+LMFYRR LHSQRKGD+SMKEFLMK+K+ C NLA+CGE+ SEHEHVT ILNG+P EYE  ISI+ ASQ PY+VQ V SML+D E  QQV   ++  SAN+VS +S+E+++ N   P YRP SASRGRG+G  S +RIQCQLCGK+GHLVD+CYY F++S+KS  +RPP
Sbjct:   99 LIGMDTSAKIWNAIVTLYGGKTTSKLMFYRRYLHSQRKGDVSMKEFLMKVKSCCDNLASCGEVSSEHEHVTAILNGLPSEYESVISIVTASQVPYTVQGVTSMLLDTETRQQVTNCDISSSANVVSHQSLETSVDNGSTPAYRPSSASRGRGKGRFSNSRIQCQLCGKSGHLVDRCYYHFDSSFKSNNFRPP 290
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A7J9IPB7_9ROSI (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_020644 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.708e-72
Identity = 114/191 (59.69%), Postives = 145/191 (75.92%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSA-SRGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     ++TS+LMFYRRALHSQRKGDLS++EFLMKIK +C +LA CGE+ISEHEH+T +LNG+P EY+P ISIIVAS T YS+Q+V++MLIDAE+ QQ ++ E P SANLVS++S +ST +   P YRPSA         S  R QCQLCGK GHLVD+CYYRF++SYKST  RPPP
Sbjct:  115 LIGLDTSAQIWNAIVSLYGSKSTSRLMFYRRALHSQRKGDLSIREFLMKIKCFCDSLAGCGEVISEHEHITAVLNGLPSEYKPIISIIVASPTLYSLQSVMTMLIDAESRQQALMIEAPSSANLVSQQSADSTTDRSNPIYRPSASRGRGRGRSSSTRFQCQLCGKIGHLVDRCYYRFDSSYKSTNMRPPP 305
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A1U8KH30_GOSHI (uncharacterized protein LOC107915627 OS=Gossypium hirsutum OX=3635 GN=LOC107915627 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.711e-71
Identity = 120/202 (59.41%), Postives = 156/202 (77.23%), Query Frame = 0 
Query:   22 ISAMMVSYRKTLITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGHSRA-RIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            +S++  +    LI    +++I   ++     ++TS LMFYRRALHSQ KGDLSM+EFL+KIK +C NLA+CGEIISEHEH+TTILNG+PP YEP +SIIVA+ T YS+Q+VI+MLIDAE+ QQV+++EVP SANLVS++S    ++    TY+PS SRG  RG S + + QCQLCGK  HLVD+CYYRF++SYKST YRPPP
Sbjct:  217 LSSVSTTVLPHLIRLDTSAQIWNAIVSLYGGKSTSWLMFYRRALHSQSKGDLSMREFLIKIKCFCDNLASCGEIISEHEHITTILNGLPPVYEPIVSIIVANPTLYSLQSVITMLIDAESRQQVLMAEVPSSANLVSQQSAGFAIDSLTQTYQPSNSRGYRRGRSSSTQFQCQLCGKIRHLVDRCYYRFDSSYKSTNYRPPP 418
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A7J9FPR5_9ROSI (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_026889 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.923e-71
Identity = 115/193 (59.59%), Postives = 146/193 (75.65%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFA-PTYRP-SASRGRGRGH-SRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    ++KI   ++     +TTS+LMFYRR+LH QRKGD+SMKEFLMK+K+ C NLA+CGE+ISEHEHVT ILN +  EYE  ISI+ ASQ PY+VQ V SML+D E  QQV+  ++  S N+VS +S E+ +++ + P YRP SASRG GRG  S +RIQCQLCGK GHLVD+CYYRF++SYKS  +RPPP
Sbjct:   99 LIGMDTSAKIWNAIVTLYGSKTTSKLMFYRRSLHYQRKGDVSMKEFLMKVKSCCDNLASCGEVISEHEHVTAILNRLSSEYESVISIVTASQVPYTVQGVTSMLLDTETRQQVINCDISSSENVVSHQSSETYVDNGSIPAYRPSSASRGCGRGRSSNSRIQCQLCGKAGHLVDRCYYRFDSSYKSNNFRPPP 291
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A7J9B0E5_9ROSI (Retrotran_gag_3 domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_025540 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 6.926e-71
Identity = 128/256 (50.00%), Postives = 164/256 (64.06%), Query Frame = 0 
Query:    6 SQSVGVADNWFFSAKKISAMM-----VSYRKTLITFAL-------------------------------NSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTL-NDFAPTYRP--SASRGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            S + GV DN  FS KKIS ++     + +R+ ++  AL                               ++KI   ++     +TTS+LMFYRR+LHSQRKGD+SMKEFLMK+K+ C NLA+CGEIISEHEHVT ILNG+PPEYE  ISII ASQ PY+VQ V SML+D E  QQV+  ++  SAN+VS +S E++  ND  P YRP  ++        S +RIQCQLCGK GHLVD+CYYRF++SYKS  +RPPP
Sbjct:    4 SATDGVVDNRLFSTKKISVLLDDNTYLLWRQQVL-LALKAHKLQGFLDVQQVPPIQFISDGNGGLQANPDAKIWNAIVALYGSKTTSKLMFYRRSLHSQRKGDVSMKEFLMKVKSCCDNLASCGEIISEHEHVTAILNGLPPEYESVISIITASQVPYTVQEVTSMLLDTETRQQVINGDISSSANVVSHQSSETSADNDAIPAYRPSSTSRGRGRGRSSNSRIQCQLCGKAGHLVDRCYYRFDSSYKSNNFRPPP 258
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A1U8N5T1_GOSHI (uncharacterized protein LOC107943867 OS=Gossypium hirsutum OX=3635 GN=LOC107943867 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.216e-69
Identity = 116/193 (60.10%), Postives = 145/193 (75.13%), Query Frame = 0 
Query:   33 LITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSASRGRGRGHSR---ARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            LI    +++I   ++     +TTS+LMFYRRALHSQRKGDLSMKEF MKIK YC NLA+CGE IS+HEHVT ILNG+P EYE  I+II AS  PY+ Q V +ML+DAEA QQ+++++VP SAN+V+ ++ +ST    +P YRP  S  RGRG  R   +R QCQLCGK GHLVD+CYYRF+AS+KS  YRPPP
Sbjct:  151 LIGMDTSAQIWNTIVSLYGSKTTSRLMFYRRALHSQRKGDLSMKEFFMKIKGYCDNLASCGEAISDHEHVTAILNGLPSEYESVITIITASPVPYNAQGVTTMLLDAEARQQILLTDVPSSANVVTHQATDSTTP--SPAYRP-PSNTRGRGCDRSSGSRFQCQLCGKQGHLVDRCYYRFDASFKSASYRPPP 340
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A6P4PAU7_GOSAR (Ribonuclease H OS=Gossypium arboreum OX=29729 GN=LOC108475315 PE=4 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.258e-69
Identity = 126/217 (58.06%), Postives = 154/217 (70.97%), Query Frame = 0 
Query:    7 QSVGVADNWFFSAKKISAMMVSYRKTLITFALNSKIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVESTLNDFAPTYRPSAS-RGRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPPP 222
            Q  G   +W  S+   S +       LI    +++I   ++     QTTS+LMFYRRALHSQRKGDL MKEFLMKIK+YC NLA+CGEIISE EHVTTILNG+P EYE  ISIIVASQ PYSV NV +MLID E  QQ +++EVP SANLVS+++ ++  N  + +YRPS +        S  R+QCQLCGK  HLVD+CY+RF+ASYKSTGYRPPP
Sbjct:   79 QQDGAIASWLLSSVSQSVL-----PHLIGLDTSAQIWNAIVSLYGSQTTSRLMFYRRALHSQRKGDLPMKEFLMKIKSYCDNLASCGEIISEREHVTTILNGLPSEYESVISIIVASQHPYSVHNVTNMLIDTETRQQAIMTEVPASANLVSQQTSDADSNGRSSSYRPSITRGRGRGRSSGGRVQCQLCGKLEHLVDRCYHRFDASYKSTGYRPPP 290
[Close]
BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Match: A0A7J9GG79_9ROSI (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_007341 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.979e-68
Identity = 108/185 (58.38%), Postives = 141/185 (76.22%), Query Frame = 0 
Query:   41 KIVLLLLGFCPRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHEHVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEVPCSANLVSRESVEST-LNDFAPTYRPSASR---GRGRGHSRARIQCQLCGKTGHLVDQCYYRFNASYKSTGYRPP 221
            K V+ L G    +TTS+LMFYRR LHSQRKG+LSMK+FL+KIK  C +L +CGEIISEHEH+T ILNG+ P+YE  I+I+ +SQ PY+VQ V SML+D EA QQ+V +E+  SAN+VS +S +ST  +   P+Y+PS++    GR R  S ++IQCQLCGK GHLVD+ Y+RF++SYKS  YRPP
Sbjct:    9 KAVVTLYG---SKTTSKLMFYRRTLHSQRKGELSMKDFLVKIKGCCDHLTSCGEIISEHEHITAILNGLSPDYESVITIVTSSQVPYTVQGVTSMLLDTEARQQLVSTEISSSANMVSHQSSDSTGFSGSIPSYQPSSTIWGCGRSRS-SHSKIQCQLCGKAGHLVDRWYHRFDSSYKSNNYRPP 189
The following BLAST results are available for this feature:
BLAST of A1.A1_06G217900-1 vs. NCBI nr
Analysis Date: 2022-12-10 (BLASTP of USDA v1.0 Gossypium herbaceum (A1) 'Wagad' proteins vs NCBI nr )
Total hits: 10
Match NameE-valueIdentityDescription
ref|XP_040952679.1|5.965e-8060.00uncharacterized protein LOC121219101 [Gossypium hi... [more]
ref|XP_017640035.1|2.409e-7364.40PREDICTED: uncharacterized protein LOC108481406 [G... [more]
gb|MBA0753075.1|4.818e-7360.42hypothetical protein [Gossypium gossypioides][more]
gb|MBA0823951.1|3.550e-7259.69hypothetical protein [Gossypium armourianum][more]
gb|KAG8483528.1|4.534e-7161.78hypothetical protein CXB51_022374 [Gossypium anoma... [more]
gb|MBA0786924.1|1.023e-7059.59hypothetical protein [Gossypium trilobum][more]
gb|MBA0729805.1|1.440e-7050.00hypothetical protein [Gossypium laxum][more]
ref|XP_017632772.1|2.616e-6958.06PREDICTED: uncharacterized protein LOC108475315 [G... [more]
gb|MBA0796579.1|4.113e-6858.38hypothetical protein [Gossypium harknessii][more]
gb|MBA0875988.1|1.673e-6760.64hypothetical protein [Gossypium schwendimanii][more]
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BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Analysis Date: 2022-12-10 (BLASTP of USDA v1.0 Gossypium herbaceum (A1) 'Wagad' proteins vs UniProt TrEMBL )
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8IT06_GOSHI2.121e-7562.83uncharacterized protein LOC107900016 OS=Gossypium ... [more]
A0A6P4Q974_GOSAR1.159e-7364.40uncharacterized protein LOC108481406 OS=Gossypium ... [more]
A0A7J9CXU3_GOSGO2.318e-7360.42Uncharacterized protein (Fragment) OS=Gossypium go... [more]
A0A7J9IPB7_9ROSI1.708e-7259.69Uncharacterized protein OS=Gossypium armourianum O... [more]
A0A1U8KH30_GOSHI1.711e-7159.41uncharacterized protein LOC107915627 OS=Gossypium ... [more]
A0A7J9FPR5_9ROSI4.923e-7159.59Uncharacterized protein (Fragment) OS=Gossypium tr... [more]
A0A7J9B0E5_9ROSI6.926e-7150.00Retrotran_gag_3 domain-containing protein OS=Gossy... [more]
A0A1U8N5T1_GOSHI1.216e-6960.10uncharacterized protein LOC107943867 OS=Gossypium ... [more]
A0A6P4PAU7_GOSAR1.258e-6958.06Ribonuclease H OS=Gossypium arboreum OX=29729 GN=L... [more]
A0A7J9GG79_9ROSI1.979e-6858.38Uncharacterized protein OS=Gossypium harknessii OX... [more]
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BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Analysis Date: 2022-12-10 (BLASTP of USDA v1.0 Gossypium herbaceum (A1) 'Wagad' proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of A1.A1_06G217900-1 vs. ExPASy TrEMBL
Analysis Date: 2022-12-10 (BLASTP of USDA v1.0 Gossypium herbaceum (A1) 'Wagad' proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for USDA v1.0 Gossypium herbaceum (A1) 'Wagad' proteins
Date Performed: 2022-12-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 52..141
e-value: 5.2E-11
score: 42.5
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 52..211
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 52..211
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 192..205
score: 8.531888
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 174..206

Sequences
The following sequences are available for this feature:

mRNA sequence

>A1.A1_06G217900-1_USDA-A1_v1 ID=A1.A1_06G217900-1_USDA-A1_v1; Name=A1.A1_06G217900-1; organism=Gossypium herbaceum; type=mRNA; length=669bp
ATGGATCCATCATCAAGTCAGTCTGTCGGTGTTGCTGATAATTGGTTCTT
CTCTGCCAAGAAGATTAGTGCGATGATGGTGTCTTACAGGAAAACCTTGA
TTACGTTCGCTTTGAACAGCAAGATAGTGCTCTTGCTTCTTGGCTTCTGT
CCTCGTCAAACTACCTCTCAATTGATGTTCTATCGTCGAGCCTTGCATTC
ACAACGCAAGGGTGATCTCTCTATGAAAGAGTTCTTAATGAAGATCAAGA
CCTACTGTGCTAATCTCGCCAACTGTGGAGAAATTATTAGTGAACATGAA
CACGTCACTACGATTCTCAATGGGATACCACCAGAATATGAGCCTAGTAT
CTCCATTATCGTTGCCAGTCAAACTCCCTATAGTGTCCAGAATGTTATAT
CCATGTTAATTGATGCTGAAGCTTGCCAGCAAGTAGTAGTATCAGAAGTT
CCTTGTTCGGCCAATCTTGTTTCTCGAGAATCTGTAGAGTCAACTCTTAA
CGATTTTGCCCCGACATATCGCCCCTCTGCTTCTCGCGGTCGTGGGCGTG
GTCATTCTAGGGCACGTATTCAATGCCAATTATGTGGTAAAACAGGGCAC
TTGGTTGACCAATGTTATTACAGGTTCAATGCTTCCTACAAAAGTACAGG
TTACAGGCCCCCACCGTAG
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protein sequence of A1.A1_06G217900-1_USDA-A1_v1

>A1.A1_06G217900-1_USDA-A1_v1 ID=A1.A1_06G217900-1_USDA-A1_v1; Name=A1.A1_06G217900-1_USDA-A1_v1; organism=Gossypium herbaceum; type=polypeptide; length=222bp
MDPSSSQSVGVADNWFFSAKKISAMMVSYRKTLITFALNSKIVLLLLGFC
PRQTTSQLMFYRRALHSQRKGDLSMKEFLMKIKTYCANLANCGEIISEHE
HVTTILNGIPPEYEPSISIIVASQTPYSVQNVISMLIDAEACQQVVVSEV
PCSANLVSRESVESTLNDFAPTYRPSASRGRGRGHSRARIQCQLCGKTGH
LVDQCYYRFNASYKSTGYRPPP
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mRNA from alignment at A1_06:129895470..129896324-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A1.A1_06G217900-1_USDA-A1_v1 ID=A1.A1_06G217900-1_USDA-A1_v1; Name=A1.A1_06G217900-1; organism=Gossypium herbaceum; type=mRNA; length=855bp; location=Sequence derived from: A1_06:129895470..129896324- (Gossypium herbaceum
ATGGATCCATCATCAAGTCAGTCTGTCGGTGTTGCTGATAATTGGTTCTT
CTCTGCCAAGAAGATTAGTGTTCTTCTTGATGATTCCAACTAGGTTCTTT
TAGCAGTTAAAACTTATAAGCTCCAACGTTTTCTTGATTTGCATACTGTC
CCACCTCCTCAAATGGTTCTAGGCGATGATGGTGTCTTACAGGAAAACCT
TGATTACGTTCGCTTTGAACAGCAAGATAGTGCTCTTGCTTCTTGGCTTC
TGTCCTCGGTGAGTCAAGCTGTTCTCCCTTATCTCATTGGTTTGGATACA
AGTGCCTAAATTTGGAATGCTACTGTCTCATTATATGGCAGTCAAACTAC
CTCTCAATTGATGTTCTATCGTCGAGCCTTGCATTCACAACGCAAGGGTG
ATCTCTCTATGAAAGAGTTCTTAATGAAGATCAAGACCTACTGTGCTAAT
CTCGCCAACTGTGGAGAAATTATTAGTGAACATGAACACGTCACTACGAT
TCTCAATGGGATACCACCAGAATATGAGCCTAGTATCTCCATTATCGTTG
CCAGTCAAACTCCCTATAGTGTCCAGAATGTTATATCCATGTTAATTGAT
GCTGAAGCTTGCCAGCAAGTAGTAGTATCAGAAGTTCCTTGTTCGGCCAA
TCTTGTTTCTCGAGAATCTGTAGAGTCAACTCTTAACGATTTTGCCCCGA
CATATCGCCCCTCTGCTTCTCGCGGTCGTGGGCGTGGTCATTCTAGGGCA
CGTATTCAATGCCAATTATGTGGTAAAACAGGGCACTTGGTTGACCAATG
TTATTACAGGTTCAATGCTTCCTACAAAAGTACAGGTTACAGGCCCCCAC
CGTAG
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Coding sequence (CDS) from alignment at A1_06:129895470..129896324-

>A1.A1_06G217900-1_USDA-A1_v1 ID=A1.A1_06G217900-1_USDA-A1_v1; Name=A1.A1_06G217900-1; organism=Gossypium herbaceum; type=CDS; length=669bp; location=Sequence derived from: A1_06:129895470..129896324- (Gossypium herbaceum
ATGGATCCATCATCAAGTCAGTCTGTCGGTGTTGCTGATAATTGGTTCTT
CTCTGCCAAGAAGATTAGTGCGATGATGGTGTCTTACAGGAAAACCTTGA
TTACGTTCGCTTTGAACAGCAAGATAGTGCTCTTGCTTCTTGGCTTCTGT
CCTCGTCAAACTACCTCTCAATTGATGTTCTATCGTCGAGCCTTGCATTC
ACAACGCAAGGGTGATCTCTCTATGAAAGAGTTCTTAATGAAGATCAAGA
CCTACTGTGCTAATCTCGCCAACTGTGGAGAAATTATTAGTGAACATGAA
CACGTCACTACGATTCTCAATGGGATACCACCAGAATATGAGCCTAGTAT
CTCCATTATCGTTGCCAGTCAAACTCCCTATAGTGTCCAGAATGTTATAT
CCATGTTAATTGATGCTGAAGCTTGCCAGCAAGTAGTAGTATCAGAAGTT
CCTTGTTCGGCCAATCTTGTTTCTCGAGAATCTGTAGAGTCAACTCTTAA
CGATTTTGCCCCGACATATCGCCCCTCTGCTTCTCGCGGTCGTGGGCGTG
GTCATTCTAGGGCACGTATTCAATGCCAATTATGTGGTAAAACAGGGCAC
TTGGTTGACCAATGTTATTACAGGTTCAATGCTTCCTACAAAAGTACAGG
TTACAGGCCCCCACCGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding