maker-Dt_10-snap-gene-50.683-mRNA-1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_012453478.1| (PREDICTED: F-box protein At3g07870-like [Gossypium raimondii]) HSP 1 Score: 567 bits (1460), Expect = 0.000e+0 Identity = 277/309 (89.64%), Postives = 279/309 (90.29%), Query Frame = 0 Query: 1 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQISRF 287 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPT DISDISACNGL CLV PKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDF GLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDK SSECTKTGVLGGCLFICHYPDFMQFDIW MKEYGVKESWTKQFV+KHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISY PCFVSLYNVAKGEQIS + Sbjct: 1 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTWDISDISACNGLLCLVGPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFWGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSIVNAPTDFVSLRFKAFLNGALHWSKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKSSSECTKTGVLGGCLFICHYPDFMQFDIWAMKEYGVKESWTKQFVVKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYAPCFVSLYNVAKGEQISSY 309
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: gb|MBA0629062.1| (hypothetical protein [Gossypium davidsonii] >gb|MBA0664739.1| hypothetical protein [Gossypium klotzschianum]) HSP 1 Score: 430.639 bits (1106), Expect = 6.265e-150 Identity = 224/307 (72.96%), Postives = 226/307 (73.62%), Query Frame = 0 Query: 1 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQIS 285 MYNNLEKSRKRLHLS+VY GASVQVSKLNFTPKFKVPT DISDISACNGL CLV PKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDF GLSYSTVTNQYKLLQSYYPTDELNCPM EIYTIGSGTWRSI SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF DAI+YTPCFVSLYNVAKGEQIS Sbjct: 1 MYNNLEKSRKRLHLSHVYVDGASVQVSKLNFTPKFKVPTWDISDISACNGLLCLVGPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFWGLSYSTVTNQYKLLQSYYPTDELNCPMAEIYTIGSGTWRSIVNAPTDFVSLRFKAFLNGALHWSKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF----------------------------------------------------DAIAYTPCFVSLYNVAKGEQIS 255
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: gb|MBA0725290.1| (hypothetical protein [Gossypium laxum]) HSP 1 Score: 375.555 bits (963), Expect = 3.135e-127 Identity = 194/291 (66.67%), Postives = 213/291 (73.20%), Query Frame = 0 Query: 28 KLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSISKSSL--------------------------RGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGS-----YQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQISRF 287 + TPK VPT DISDISACNGL CL+ PK+DDPFYV CNPILGEFITIQPPYK+RCR F GL YSTVTNQYKLL SYYP E N PM EIYTIGS TWRSI + GEFINSFD DTEQFGIVPPP HFQELDK +E T TGVLG CLF+C++PDF++FDIWVMKEYGVKESWTKQFVIK +Y YQP+LVLSNGEIFML N + TCYNQK R++RGAKSF I S+FDAI+YTPC VSLYNVAKGEQIS + Sbjct: 2 QTQLTPKSNVPTWDISDISACNGLLCLLGPKKDDPFYV---CNPILGEFITIQPPYKERCRSRFWGLGYSTVTNQYKLLHSYYPIVESNYPMAEIYTIGSRTWRSIGFGNAPTDLVSLPFNAFLNGALHWYNISFGGAGEFINSFDIDTEQFGIVPPPDHFQELDKVFTEYTTTGVLGDCLFVCYFPDFVEFDIWVMKEYGVKESWTKQFVIKDMYPKGYGWDIYQPMLVLSNGEIFMLLNNEEITCYNQKRRHMRGAKSFRIRSQFDAIAYTPCLVSLYNVAKGEQISWY 289
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: gb|KAB2009624.1| (hypothetical protein ES319_D10G180100v1 [Gossypium barbadense] >gb|TYG50674.1| hypothetical protein ES288_D10G194200v1 [Gossypium darwinii]) HSP 1 Score: 367.466 bits (942), Expect = 8.380e-124 Identity = 195/263 (74.14%), Postives = 201/263 (76.43%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYN 245 L+K RKRL LS+VYA GAS QVSKLNFTPK VPT DISDISACNGL CL+ PK+ DPFYVFYVCNPILGEFITIQPP K R R F GL YSTVTNQ KLLQSYYPT +LN PM EIYTIGSGTWRSI SKS LRGEFINSFDFDTEQFGIVPPPHHFQELDK SS CTKTGVLGGCLFIC YGVKESWTKQFVIKHVYSGSYQP+LVLSNGEIFMLSNYPK TCYN Sbjct: 83 LQKCRKRLQLSHVYAGGASFQVSKLNFTPKSNVPTWDISDISACNGLLCLLGPKKGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFSGLGYSTVTNQCKLLQSYYPTVKLNYPMAEIYTIGSGTWRSIGNAPTDYVSLPFNAFLNGAHHWSKSFLRGEFINSFDFDTEQFGIVPPPHHFQELDKYSSGCTKTGVLGGCLFIC--------------PYGVKESWTKQFVIKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYN 331
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: gb|KAG4126537.1| (hypothetical protein ERO13_D10G162364v2 [Gossypium hirsutum]) HSP 1 Score: 366.696 bits (940), Expect = 1.579e-123 Identity = 194/263 (73.76%), Postives = 201/263 (76.43%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYN 245 L+K RKRL LS+VYA GAS QVSKLNFTPK VPT DISDISACNGL CL+ PK+ DPFYVFYVCNPILGEFITIQPP K R R F GL YSTVTNQ KLLQSYYPT +LN PM EIYTIGSGTWRSI SKS LRGEFINSFDFDTEQFGI+PPPHHFQELDK SS CTKTGVLGGCLFIC YGVKESWTKQFVIKHVYSGSYQP+LVLSNGEIFMLSNYPK TCYN Sbjct: 83 LQKCRKRLQLSHVYAGGASFQVSKLNFTPKSNVPTWDISDISACNGLLCLLGPKKGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFSGLGYSTVTNQCKLLQSYYPTVKLNYPMAEIYTIGSGTWRSIGNAPTDYVSLPFNAFLNGAHHWSKSFLRGEFINSFDFDTEQFGIIPPPHHFQELDKYSSGCTKTGVLGGCLFIC--------------PYGVKESWTKQFVIKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYN 331
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_017643114.1| (PREDICTED: F-box protein At3g07870-like isoform X2 [Gossypium arboreum]) HSP 1 Score: 354.755 bits (909), Expect = 1.639e-119 Identity = 191/280 (68.21%), Postives = 204/280 (72.86%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF----------VSLYNVAKG-EQISRFICKK--LDDLIHE 298 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Y +G E ++R + + + DLIHE Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCFSLQCCKRRANFQFYVGCRGPESMTRSVNEHIYMQDLIHE 283
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_017643127.1| (PREDICTED: F-box protein At3g07870-like isoform X4 [Gossypium arboreum] >ref|XP_017643134.1| PREDICTED: F-box protein At3g07870-like isoform X4 [Gossypium arboreum] >ref|XP_017643142.1| PREDICTED: F-box protein At3g07870-like isoform X4 [Gossypium arboreum]) HSP 1 Score: 353.214 bits (905), Expect = 3.773e-119 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_017643105.1| (PREDICTED: F-box protein At3g07870-like isoform X1 [Gossypium arboreum]) HSP 1 Score: 353.599 bits (906), Expect = 6.831e-119 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_017643122.1| (PREDICTED: F-box protein At3g07870-like isoform X3 [Gossypium arboreum]) HSP 1 Score: 352.058 bits (902), Expect = 1.793e-118 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Match: ref|XP_039048677.1| (F-box protein At3g07870-like [Hibiscus syriacus] >ref|XP_039048678.1| F-box protein At3g07870-like [Hibiscus syriacus] >gb|KAE8660100.1| F-box and associated interaction domains-containing protein [Hibiscus syriacus]) HSP 1 Score: 345.51 bits (885), Expect = 3.640e-114 Identity = 183/308 (59.42%), Postives = 211/308 (68.51%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSISKS-----------------------SLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVY---SGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQISR 286 +KSRK+L LS+V A G QVS+LNFTP VPT DISDISACNGL CLV PK+ DPFYV CNPILGEF TIQ PYKD R GL YSTVTNQYKLLQSY+PT E IYT+G+GTWRSI + GEFI+SF FDTEQFG VPPP HF ELD +ECT +GVLG LFI ++ ++ Q DIWVMKEYGVKESWTKQFVI+ ++ SG Y+P++VL NGEIF+L N CY+QK + + G K F I S DAI+YTPCFVSLYNVAKGEQ+SR Sbjct: 75 FQKSRKKLQLSHVDAKGEGFQVSQLNFTPISNVPTWDISDISACNGLLCLVGPKKGDPFYV---CNPILGEFFTIQQPYKDSLRDRCWGLGYSTVTNQYKLLQSYFPTVESTGKTARIYTVGTGTWRSIGNALNHPIALPFNAFLNGALHFRNYLPRVGEFIHSFHFDTEQFGTVPPPDHFLELDNFDAECTTSGVLGDWLFITYFSNYRQIDIWVMKEYGVKESWTKQFVIRDIFPYGSGYYEPMVVLRNGEIFLLLNTQTIVCYSQKRKQIGGTKFFKIRSLLDAIAYTPCFVSLYNVAKGEQVSR 379
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A7J8VQL2_9ROSI (FBA_1 domain-containing protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_004700 PE=4 SV=1) HSP 1 Score: 430.639 bits (1106), Expect = 3.014e-150 Identity = 224/307 (72.96%), Postives = 226/307 (73.62%), Query Frame = 0 Query: 1 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQIS 285 MYNNLEKSRKRLHLS+VY GASVQVSKLNFTPKFKVPT DISDISACNGL CLV PKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDF GLSYSTVTNQYKLLQSYYPTDELNCPM EIYTIGSGTWRSI SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF DAI+YTPCFVSLYNVAKGEQIS Sbjct: 1 MYNNLEKSRKRLHLSHVYVDGASVQVSKLNFTPKFKVPTWDISDISACNGLLCLVGPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFWGLSYSTVTNQYKLLQSYYPTDELNCPMAEIYTIGSGTWRSIVNAPTDFVSLRFKAFLNGALHWSKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF----------------------------------------------------DAIAYTPCFVSLYNVAKGEQIS 255
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A7J8SU52_GOSDV (FBA_1 domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_023676 PE=4 SV=1) HSP 1 Score: 430.639 bits (1106), Expect = 3.014e-150 Identity = 224/307 (72.96%), Postives = 226/307 (73.62%), Query Frame = 0 Query: 1 MYNNLEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQIS 285 MYNNLEKSRKRLHLS+VY GASVQVSKLNFTPKFKVPT DISDISACNGL CLV PKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDF GLSYSTVTNQYKLLQSYYPTDELNCPM EIYTIGSGTWRSI SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF DAI+YTPCFVSLYNVAKGEQIS Sbjct: 1 MYNNLEKSRKRLHLSHVYVDGASVQVSKLNFTPKFKVPTWDISDISACNGLLCLVGPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFWGLSYSTVTNQYKLLQSYYPTDELNCPMAEIYTIGSGTWRSIVNAPTDFVSLRFKAFLNGALHWSKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQF----------------------------------------------------DAIAYTPCFVSLYNVAKGEQIS 255
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A7J9AMX0_9ROSI (FBA_1 domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_021886 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 1.508e-127 Identity = 194/291 (66.67%), Postives = 213/291 (73.20%), Query Frame = 0 Query: 28 KLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSISKSSL--------------------------RGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGS-----YQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQISRF 287 + TPK VPT DISDISACNGL CL+ PK+DDPFYV CNPILGEFITIQPPYK+RCR F GL YSTVTNQYKLL SYYP E N PM EIYTIGS TWRSI + GEFINSFD DTEQFGIVPPP HFQELDK +E T TGVLG CLF+C++PDF++FDIWVMKEYGVKESWTKQFVIK +Y YQP+LVLSNGEIFML N + TCYNQK R++RGAKSF I S+FDAI+YTPC VSLYNVAKGEQIS + Sbjct: 2 QTQLTPKSNVPTWDISDISACNGLLCLLGPKKDDPFYV---CNPILGEFITIQPPYKERCRSRFWGLGYSTVTNQYKLLHSYYPIVESNYPMAEIYTIGSRTWRSIGFGNAPTDLVSLPFNAFLNGALHWYNISFGGAGEFINSFDIDTEQFGIVPPPDHFQELDKVFTEYTTTGVLGDCLFVCYFPDFVEFDIWVMKEYGVKESWTKQFVIKDMYPKGYGWDIYQPMLVLSNGEIFMLLNNEEITCYNQKRRHMRGAKSFRIRSQFDAIAYTPCLVSLYNVAKGEQISWY 289
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5D2B050_GOSDA (F-box domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G194200v1 PE=4 SV=1) HSP 1 Score: 367.466 bits (942), Expect = 4.031e-124 Identity = 195/263 (74.14%), Postives = 201/263 (76.43%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYN 245 L+K RKRL LS+VYA GAS QVSKLNFTPK VPT DISDISACNGL CL+ PK+ DPFYVFYVCNPILGEFITIQPP K R R F GL YSTVTNQ KLLQSYYPT +LN PM EIYTIGSGTWRSI SKS LRGEFINSFDFDTEQFGIVPPPHHFQELDK SS CTKTGVLGGCLFIC YGVKESWTKQFVIKHVYSGSYQP+LVLSNGEIFMLSNYPK TCYN Sbjct: 83 LQKCRKRLQLSHVYAGGASFQVSKLNFTPKSNVPTWDISDISACNGLLCLLGPKKGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFSGLGYSTVTNQCKLLQSYYPTVKLNYPMAEIYTIGSGTWRSIGNAPTDYVSLPFNAFLNGAHHWSKSFLRGEFINSFDFDTEQFGIVPPPHHFQELDKYSSGCTKTGVLGGCLFIC--------------PYGVKESWTKQFVIKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYN 331
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5J5PTA8_GOSBA (F-box domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G180100v1 PE=4 SV=1) HSP 1 Score: 367.466 bits (942), Expect = 4.031e-124 Identity = 195/263 (74.14%), Postives = 201/263 (76.43%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYN 245 L+K RKRL LS+VYA GAS QVSKLNFTPK VPT DISDISACNGL CL+ PK+ DPFYVFYVCNPILGEFITIQPP K R R F GL YSTVTNQ KLLQSYYPT +LN PM EIYTIGSGTWRSI SKS LRGEFINSFDFDTEQFGIVPPPHHFQELDK SS CTKTGVLGGCLFIC YGVKESWTKQFVIKHVYSGSYQP+LVLSNGEIFMLSNYPK TCYN Sbjct: 83 LQKCRKRLQLSHVYAGGASFQVSKLNFTPKSNVPTWDISDISACNGLLCLLGPKKGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFSGLGYSTVTNQCKLLQSYYPTVKLNYPMAEIYTIGSGTWRSIGNAPTDYVSLPFNAFLNGAHHWSKSFLRGEFINSFDFDTEQFGIVPPPHHFQELDKYSSGCTKTGVLGGCLFIC--------------PYGVKESWTKQFVIKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYN 331
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4NU35_GOSAR (F-box protein At3g07870-like isoform X2 OS=Gossypium arboreum OX=29729 GN=LOC108484011 PE=4 SV=1) HSP 1 Score: 354.755 bits (909), Expect = 7.883e-120 Identity = 191/280 (68.21%), Postives = 204/280 (72.86%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF----------VSLYNVAKG-EQISRFICKK--LDDLIHE 298 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Y +G E ++R + + + DLIHE Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCFSLQCCKRRANFQFYVGCRGPESMTRSVNEHIYMQDLIHE 283
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4Q095_GOSAR (F-box protein At3g07870-like isoform X4 OS=Gossypium arboreum OX=29729 GN=LOC108484011 PE=4 SV=1) HSP 1 Score: 353.214 bits (905), Expect = 1.815e-119 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4QF75_GOSAR (F-box protein At3g07870-like isoform X1 OS=Gossypium arboreum OX=29729 GN=LOC108484011 PE=4 SV=1) HSP 1 Score: 353.599 bits (906), Expect = 3.286e-119 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4Q084_GOSAR (F-box protein At3g07870-like isoform X3 OS=Gossypium arboreum OX=29729 GN=LOC108484011 PE=4 SV=1) HSP 1 Score: 352.058 bits (902), Expect = 8.623e-119 Identity = 182/241 (75.52%), Postives = 189/241 (78.42%), Query Frame = 0 Query: 54 LVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSI----------------------SKSSLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVYSGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCF 272 + PK DPFYVFYVCNPILGEFITIQPP K R R F G+ YSTVTNQYKLLQSYYPT +LN PM EI GSGTWRSI SK SLRGEFIN FDFDTEQFGIVPPPHHFQELD+ SS CTKTGVLGGCLFICH PDFMQFDIWVMKEYGVKESWTKQFV+KHVYSGSYQP+LVLSNGEIFMLSNYPK TCYNQKG Y+RGAKSF I KF AISY CF Sbjct: 7 FLGPKIGDPFYVFYVCNPILGEFITIQPPCKGRHRSPFWGIGYSTVTNQYKLLQSYYPTVKLNYPMAEI---GSGTWRSIGNAPTDFVSLPFNAFLNGGLHWSKFSLRGEFINFFDFDTEQFGIVPPPHHFQELDRYSSGCTKTGVLGGCLFICHCPDFMQFDIWVMKEYGVKESWTKQFVLKHVYSGSYQPMLVLSNGEIFMLSNYPKITCYNQKGIYMRGAKSFRIRLKFHAISYMLCF 244
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6A2WXB7_HIBSY (F-box and associated interaction domains-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116958pilonHSYRG00075 PE=4 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 1.751e-114 Identity = 183/308 (59.42%), Postives = 211/308 (68.51%), Query Frame = 0 Query: 5 LEKSRKRLHLSYVYAYGASVQVSKLNFTPKFKVPTSDISDISACNGLHCLVAPKRDDPFYVFYVCNPILGEFITIQPPYKDRCRGDFLGLSYSTVTNQYKLLQSYYPTDELNCPMVEIYTIGSGTWRSISKS-----------------------SLRGEFINSFDFDTEQFGIVPPPHHFQELDKCSSECTKTGVLGGCLFICHYPDFMQFDIWVMKEYGVKESWTKQFVIKHVY---SGSYQPILVLSNGEIFMLSNYPKRTCYNQKGRYLRGAKSFWIPSKFDAISYTPCFVSLYNVAKGEQISR 286 +KSRK+L LS+V A G QVS+LNFTP VPT DISDISACNGL CLV PK+ DPFYV CNPILGEF TIQ PYKD R GL YSTVTNQYKLLQSY+PT E IYT+G+GTWRSI + GEFI+SF FDTEQFG VPPP HF ELD +ECT +GVLG LFI ++ ++ Q DIWVMKEYGVKESWTKQFVI+ ++ SG Y+P++VL NGEIF+L N CY+QK + + G K F I S DAI+YTPCFVSLYNVAKGEQ+SR Sbjct: 75 FQKSRKKLQLSHVDAKGEGFQVSQLNFTPISNVPTWDISDISACNGLLCLVGPKKGDPFYV---CNPILGEFFTIQQPYKDSLRDRCWGLGYSTVTNQYKLLQSYFPTVESTGKTARIYTVGTGTWRSIGNALNHPIALPFNAFLNGALHFRNYLPRVGEFIHSFHFDTEQFGTVPPPDHFLELDNFDAECTTSGVLGDWLFITYFSNYRQIDIWVMKEYGVKESWTKQFVIRDIFPYGSGYYEPMVVLRNGEIFLLLNTQTIVCYSQKRKQIGGTKFFKIRSLLDAIAYTPCFVSLYNVAKGEQVSR 379 The following BLAST results are available for this feature:
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. NCBI nr
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs NCBI nr) Total hits: 10
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt TrEMBL) Total hits: 10
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt Swissprot) Total hits: 0
BLAST of maker-Dt_10-snap-gene-50.683-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins
Date Performed: 2022-08-09
Sequences
The
following sequences are available for this feature:
mRNA sequence >maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1 ID=maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1; Name=maker-Dt_10-snap-gene-50.683-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=900bpback to top protein sequence of maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1 >maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1 ID=maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1; Name=maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1; organism=Gossypium hirsutum; type=polypeptide; length=299bpback to top mRNA from alignment at Dt10:47946084..47947394- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1 ID=maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1; Name=maker-Dt_10-snap-gene-50.683-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=1311bp; location=Sequence derived from: Dt10:47946084..47947394- (Gossypium hirsutumback to top Coding sequence (CDS) from alignment at Dt10:47946084..47947394- >maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1 ID=maker-Dt_10-snap-gene-50.683-mRNA-1_NSF-Bar32_v1; Name=maker-Dt_10-snap-gene-50.683-mRNA-1; organism=Gossypium hirsutum; type=CDS; length=900bp; location=Sequence derived from: Dt10:47946084..47947394- (Gossypium hirsutumback to top |