Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| exon-gnl|WGS:JABEZX|Golob_00023114-RA-1 | exon-Golob_00023114-RA-1_D7_ISU_v1 | Gossypium lobatum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| cds-MBA0550992.1 | cds-MBA0550992.1_D7_ISU_v1 | Gossypium lobatum | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-gnl|WGS:JABEZX|Golob_00023114-RA | rna-Golob_00023114-RA_D7_ISU_v1-protein | Gossypium lobatum | polypeptide |
| rna-Golob_00023114-RA_D7_ISU_v1 | rna-Golob_00023114-RA_D7_ISU_v1 | Gossypium lobatum | polypeptide |
Homology
BLAST of rna-gnl|WGS:JABEZX|Golob_00023114-RA vs.
Match:
hypothetical (protein B456_009G352400 [Gossypium raimondii])
HSP 1 Score: 80.8777 bits (198), Expect = 7.398e-17
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0
Query: 1 MREYKGIWENATEREWTKFCLPAEEPTVSPLVQEFYLALKQRVATRPFYEMRVVVKAKRINVS 63
MR KGIWENAT+REW KFC AE+ + +VQ+FYLALKQR A R FYEM VK KR+ V+
Sbjct: 42 MRNCKGIWENATKREWKKFCSLAEKSLIILVVQDFYLALKQREAARQFYEMHSFVKVKRVPVT 104
BLAST of rna-gnl|WGS:JABEZX|Golob_00023114-RA vs.
Match:
tr|A0A5B6UYE5|A0A5B6UYE5_9ROSI (DNA damage-inducible protein 1-like OS=Gossypium australe OX=47621 GN=EPI10_028393 PE=4 SV=1)
HSP 1 Score: 99.3673 bits (246), Expect = 2.073e-24
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 0
Query: 1 MREYKGIWENATEREWTKFCLPAEEPTVSPLVQEFYLALKQRVATRPFYEMRVVVKAKRINV 62
M+ YKGIWENATEREW KFCLP+E+PT+ +VQEFYL+LKQR ATRPFYE+R VK K INV
Sbjct: 1 MKIYKGIWENATEREWKKFCLPSEKPTIFCMVQEFYLSLKQREATRPFYELRSFVKVKGINV 62
BLAST of rna-gnl|WGS:JABEZX|Golob_00023114-RA vs.
Match:
tr|A0A0D2TX91|A0A0D2TX91_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G352400 PE=4 SV=1)
HSP 1 Score: 80.8777 bits (198), Expect = 8.646e-17
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0
Query: 1 MREYKGIWENATEREWTKFCLPAEEPTVSPLVQEFYLALKQRVATRPFYEMRVVVKAKRINVS 63
MR KGIWENAT+REW KFC AE+ + +VQ+FYLALKQR A R FYEM VK KR+ V+
Sbjct: 42 MRNCKGIWENATKREWKKFCSLAEKSLIILVVQDFYLALKQREAARQFYEMHSFVKVKRVPVT 104
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-Golob_00023114-RA_D7_ISU_v1 ID=rna-Golob_00023114-RA_D7_ISU_v1; Name=rna-gnl|WGS:JABEZX|Golob_00023114-RA; organism=Gossypium lobatum; type=mRNA; length=189bp
ATGAGGGAGTACAAAGGAATCTGGGAGAATGCCACCGAAAGAGAATGGAC
AAAATTTTGCTTGCCAGCCGAAGAACCTACAGTAAGTCCCTTGGTTCAAG
AATTTTATTTAGCACTGAAACAAAGAGTAGCAACTAGACCATTCTATGAG
ATGCGTGTTGTTGTGAAAGCCAAAAGGATTAATGTTTCG
back to topprotein sequence of rna-Golob_00023114-RA_D7_ISU_v1
>rna-Golob_00023114-RA_D7_ISU_v1 ID=rna-Golob_00023114-RA_D7_ISU_v1; Name=rna-Golob_00023114-RA_D7_ISU_v1; organism=Gossypium lobatum; type=polypeptide; length=63bp
MREYKGIWENATEREWTKFCLPAEEPTVSPLVQEFYLALKQRVATRPFYE
MRVVVKAKRINVS
back to topmRNA from alignment at Chr02:35305849..35306037+
Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-Golob_00023114-RA_D7_ISU_v1 ID=rna-Golob_00023114-RA_D7_ISU_v1; Name=rna-gnl|WGS:JABEZX|Golob_00023114-RA; organism=Gossypium lobatum; type=mRNA; length=189bp; location=Sequence derived from: Chr02:35305849..35306037+ (Gossypium lobatum
ATGAGGGAGTACAAAGGAATCTGGGAGAATGCCACCGAAAGAGAATGGAC
AAAATTTTGCTTGCCAGCCGAAGAACCTACAGTAAGTCCCTTGgttcaag
aattttatttagCACTGAAACAAAGAGTAGCAACTAGACCATTCTATGAG
ATGCGTGTTGTTGTGAAAGCCAAAAGGATTAATGTTTCG
back to topCoding sequence (CDS) from alignment at Chr02:35305849..35306037+
>rna-Golob_00023114-RA_D7_ISU_v1 ID=rna-Golob_00023114-RA_D7_ISU_v1; Name=rna-gnl|WGS:JABEZX|Golob_00023114-RA; organism=Gossypium lobatum; type=CDS; length=189bp; location=Sequence derived from: Chr02:35305849..35306037+ (Gossypium lobatum
ATGAGGGAGTACAAAGGAATCTGGGAGAATGCCACCGAAAGAGAATGGAC
AAAATTTTGCTTGCCAGCCGAAGAACCTACAGTAAGTCCCTTGgttcaag
aattttatttagCACTGAAACAAAGAGTAGCAACTAGACCATTCTATGAG
ATGCGTGTTGTTGTGAAAGCCAAAAGGATTAATGTTTCG
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