Gar11G30040, Gar11G30040_WHU-A2_v1 (mRNA) Gossypium arboreum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A1U8HVA8_GOSHI (uncharacterized protein LOC107889928 OS=Gossypium hirsutum OX=3635 GN=LOC107889928 PE=4 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 5.344e-80 Identity = 126/169 (74.56%), Postives = 136/169 (80.47%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKPGD 169
MDRSTALDVGT IGKVVAIDWKDR GGW EFM KIM+NILKPLRRIVKLV RD RV TCMLKY+RL DFCYL G+IGHTVK CKNKLPGPVSNEAN Q+GSWLRVPVAVPT GRGIRRN V+IM KT LS D EE RSDMRNR Q DEN+ + + ++ P D
Sbjct: 147 MDRSTALDVGTTIGKVVAIDWKDRNGGWTEFMMLKIMVNILKPLRRIVKLVDRDERVITCMLKYERLPDFCYLCGIIGHTVKNCKNKLPGPVSNEANFQFGSWLRVPVAVPTLGRGIRRNGVKIMEPKTILSVDREESRSDMRNRGGQFDENAGDKGLEEGSMSTSPVD 315
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5Y2I8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10888 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 2.807e-59 Identity = 111/275 (40.36%), Postives = 147/275 (53.45%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDM------------------------------RNRCRQPDEN--------------------------SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
MDR A++VG IG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKL R G T ++KY+RL DFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ TK T + D+EE +++ R R P+ N SDH+AI +DT G +P D DPR F+YD CW + +EA I+ W + + L+K+ ++ K+LG W
Sbjct: 94 MDRQLAVEVGNTIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLESRYGGETIGVIKYERLPDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTKITANEDNEESQTNSGGEKGSISTSPVEKRSHKLIRDCMGWFKHKRKRMSGPNGNNSEESPCKVVRRRLMESVSPFKVVSSSDHDAISLDTEGRRPRDGLRDPRLSFKYDVCWARNEEAKMIIKEAWQRGSQDTLEKISIVGKELGRW 368
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5WJJ7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29434 PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.127e-56 Identity = 108/275 (39.27%), Postives = 143/275 (52.00%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEEC----RSDMRNRCRQPDE----------------------------------------------------NSDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
MDR A++VG AIG++VAIDWKDR G W EFMR K+ INI KPLRRIVKL R G T ++KY+RL DFCY+ GLIGHT K K+ G N++N QYGSW+R P P Q R +RRN VEI+ T T++ D EE R + R ++ E +SDH+AI +DT G +P D DPR F+YD CW + ++A I+ W + + L+K+ + +LG W
Sbjct: 147 MDRQLAVEVGNAIGELVAIDWKDRNGAWTEFMRLKVKINISKPLRRIVKLASRYGGETIGVIKYERLPDFCYVCGLIGHTSKNYKDNREGDGINDSNAQYGSWMRAPFMNPNQERNMRRNGVEIVKTTITVNEDKEESQTNSRDESRQSAQKGKEKEVDLKTDNGWFTWVNNREGTARVKERLDRFLMSANAVNSFPFLETRVIRQSSSDHDAISLDTEGRRPRDGLRDPRLSFKYDVCWARNEKAKKIIKEAWQRGSQDTLEKISFVGNELGRW 421
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5SEX0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD05374 PE=4 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.826e-49 Identity = 82/148 (55.41%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQ 148
MDR ALDVG A+ ++VAIDWKD GGW EF+R K+ IN+LKPLRR+VKL+ ++G ++KY+RL DFCY+ GLIGH+ KTCK+ G NE+NLQYGSW+R P+ +P Q R IRRN VE++ +KT ++ D EE +SD R Q
Sbjct: 94 MDRQMALDVGNALSELVAIDWKDCNGGWTEFVRIKVKINVLKPLRRVVKLLDKEGTEVIGVIKYERLPDFCYVCGLIGHSSKTCKHNKEGSALNESNLQYGSWMRAPIVIPNQDRNIRRNGVELVNSKTQMNNDKEESQSDSRGESEQ 241 HSP 2 Score: 93.9745 bits (232), Expect = 1.157e-18 Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 0
Query: 153 SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
SDHEAI+MD G +P DP+ WFRYD CW KE+EA DI+++IW +NLL+K++LIR++LGPW
Sbjct: 466 SDHEAILMDLYGSQPKQQGYDPKVWFRYDRCWAKEREARDIISNIWLNKGTNLLEKMELIRERLGPW 532
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5WNU7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27921 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.321e-47 Identity = 80/157 (50.96%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEA 157
MDR A+DVG A+G++VAIDWKDR GGW EFMR K+ I+ILKPLRR+V++V +D ++KY+RL DFCY+ GLIGHT+K C N G N++NLQYGSW+R P+ P Q RG+RRN VE++ ++ ++ ++EE S+ R C Q +A
Sbjct: 137 MDRQMAIDVGNALGELVAIDWKDRFGGWTEFMRIKVKIDILKPLRRVVRIVDKDRGERIGVIKYERLSDFCYICGLIGHTLKLCNNNKGGMELNDSNLQYGSWMRAPIVTPIQERGLRRNGVELVKSRPRVNEENEERLSNSREECEQHGAKGKEKA 293 HSP 2 Score: 63.5438 bits (153), Expect = 3.546e-8 Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0
Query: 154 DHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSI 197
DHE I+MDT G KP D D R WFRYD CW KE EA DI+ I
Sbjct: 455 DHEVILMDTNGSKPKDKGVDHRVWFRYDPCWGKEDEAKDIIKCI 498
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5RCG1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD18598 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.414e-47 Identity = 97/198 (48.99%), Postives = 121/198 (61.11%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKPGDNNTDPR-TWFRYDACWNKEKEAHDIVTSI 197
MDR TALDVG AIG++VAIDWKDR GGW EF+R KI INI P+RR+VK VGRD C LKY+RL FCY GLIGHTVK CK+K N NLQYGSWLRV Q RGI RN +EIM KT + D E ++D R Q ++ + + ++L DN+ R T F +A NK + + D++ +
Sbjct: 136 MDRQTALDVGNAIGELVAIDWKDRNGGWTEFLRLKIKINISNPVRRVVKFVGRDEIEIICALKYERLPTFCYYCGLIGHTVKKCKSKDRDSGFNVLNLQYGSWLRVNFVASNQERGIGRNGIEIMVKKTPPNEDKEGSKTDTREDSGQMEQKRNEKGCEEESL-----DNDNSFRFTGFYGNADPNKRRSSWDMLRKV 328
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5W2M4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35374 PE=4 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.402e-47 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAI 158
MDR + VG AIG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKLV R G T ++KY+RL DFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ T T + D EE +++ R+ Q + + + +
Sbjct: 147 MDRQLVVAVGNAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLVSRYGGETIEVIKYERLPDFCYMCGLIGHTFKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTTITANEDKEESQTNSRDESGQSAQKGNEKEV 304
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A0D2U033_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G348300 PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 6.643e-47 Identity = 77/167 (46.11%), Postives = 111/167 (66.47%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKP 167
++R LDV A+G++VAIDW+DR GGW EF+R K+ IN+LKPLRR+VK++ R+G ++KY+RL DFCY G+IGH+ K C++ NE+NLQYGSW+R P+ PTQ R IRRN VE+M +K ++AD EE +S+ R Q + + +++ P
Sbjct: 146 LERQMVLDVRNALGELVAIDWRDRNGGWTEFVRIKVKINVLKPLRRVVKVLDREGTEVIGVIKYERLPDFCYGCGIIGHSSKICRHNKEASKLNESNLQYGSWMRAPLVYPTQDRNIRRNGVELMKSKDQMNADREESQSNSRGESEQMGQKGKETSGEEESMSTSP 312
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5XZD0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11939 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 9.666e-47 Identity = 82/158 (51.90%), Postives = 108/158 (68.35%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAI 158
MDR A++VG+AIG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKL R G T ++KY+RLLDFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ T T + D EE +++ R+ Q + + + +
Sbjct: 147 MDRQLAVEVGSAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLASRYGGETIGVIKYERLLDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTTITANEDKEESQTNSRDESGQSAQKGNEKGV 304 HSP 2 Score: 60.8474 bits (146), Expect = 3.077e-7 Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0
Query: 152 NSDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
+SDH+ I +DT G +P D DPR F YD CW + +EA I+ W + + L+K+ ++ +LG W
Sbjct: 487 SSDHDTISLDTEGRRPRDGLRDPRLSFEYDVCWARNEEAKMIIKEAWQRGSQDTLEKILIVGNELGRW 554
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Match: A0A2P5SS72_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01012 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.370e-46 Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDE 151
+DR T L++G AIG+++AIDWKDR GGW EFMR K+MINILKPLRR+VKLV R+G T ++KY+RL DFCY GLIGH+ + C++ G N N QYG WLRVP+ P Q RG+RRN VE++ +K +D EE ++ R + P++
Sbjct: 147 IDRQTTLNIGNAIGELMAIDWKDRDGGWTEFMRIKVMINILKPLRRVVKLVDREGMETIGVIKYERLPDFCYACGLIGHSFRACESNKEGVGQNGLNYQYGGWLRVPIVNPNQDRGMRRNGVELVKSKDHTDSDKEESHTNSRGKSGLPEQ 297 HSP 2 Score: 75.8702 bits (185), Expect = 1.975e-12 Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0
Query: 153 SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
SDHE I+++T+G K + + + FRYDACW KE+EA DI+ IW S++L K+ ++RK+LGPW
Sbjct: 471 SDHEVILLNTIGNKSEEESCNHSLRFRYDACWAKEQEARDIIKRIWDGKNSDMLTKMDMVRKELGPW 537
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1029012175|ref|XP_016669952.1| (PREDICTED: uncharacterized protein LOC107889928 [Gossypium hirsutum]) HSP 1 Score: 253.062 bits (645), Expect = 6.362e-80 Identity = 126/169 (74.56%), Postives = 136/169 (80.47%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKPGD 169
MDRSTALDVGT IGKVVAIDWKDR GGW EFM KIM+NILKPLRRIVKLV RD RV TCMLKY+RL DFCYL G+IGHTVK CKNKLPGPVSNEAN Q+GSWLRVPVAVPT GRGIRRN V+IM KT LS D EE RSDMRNR Q DEN+ + + ++ P D
Sbjct: 147 MDRSTALDVGTTIGKVVAIDWKDRNGGWTEFMMLKIMVNILKPLRRIVKLVDRDERVITCMLKYERLPDFCYLCGIIGHTVKNCKNKLPGPVSNEANFQFGSWLRVPVAVPTLGRGIRRNGVKIMEPKTILSVDREESRSDMRNRGGQFDENAGDKGLEEGSMSTSPVD 315
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1347712781|gb|PPS09761.1| (hypothetical protein GOBAR_AA10888 [Gossypium barbadense]) HSP 1 Score: 199.904 bits (507), Expect = 3.342e-59 Identity = 111/275 (40.36%), Postives = 147/275 (53.45%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDM------------------------------RNRCRQPDEN--------------------------SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
MDR A++VG IG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKL R G T ++KY+RL DFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ TK T + D+EE +++ R R P+ N SDH+AI +DT G +P D DPR F+YD CW + +EA I+ W + + L+K+ ++ K+LG W
Sbjct: 94 MDRQLAVEVGNTIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLESRYGGETIGVIKYERLPDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTKITANEDNEESQTNSGGEKGSISTSPVEKRSHKLIRDCMGWFKHKRKRMSGPNGNNSEESPCKVVRRRLMESVSPFKVVSSSDHDAISLDTEGRRPRDGLRDPRLSFKYDVCWARNEEAKMIIKEAWQRGSQDTLEKISIVGKELGRW 368
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1347690000|gb|PPR91253.1| (hypothetical protein GOBAR_AA29434 [Gossypium barbadense]) HSP 1 Score: 194.897 bits (494), Expect = 1.342e-56 Identity = 108/275 (39.27%), Postives = 143/275 (52.00%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEEC----RSDMRNRCRQPDE----------------------------------------------------NSDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
MDR A++VG AIG++VAIDWKDR G W EFMR K+ INI KPLRRIVKL R G T ++KY+RL DFCY+ GLIGHT K K+ G N++N QYGSW+R P P Q R +RRN VEI+ T T++ D EE R + R ++ E +SDH+AI +DT G +P D DPR F+YD CW + ++A I+ W + + L+K+ + +LG W
Sbjct: 147 MDRQLAVEVGNAIGELVAIDWKDRNGAWTEFMRLKVKINISKPLRRIVKLASRYGGETIGVIKYERLPDFCYVCGLIGHTSKNYKDNREGDGINDSNAQYGSWMRAPFMNPNQERNMRRNGVEIVKTTITVNEDKEESQTNSRDESRQSAQKGKEKEVDLKTDNGWFTWVNNREGTARVKERLDRFLMSANAVNSFPFLETRVIRQSSSDHDAISLDTEGRRPRDGLRDPRLSFKYDVCWARNEKAKKIIKEAWQRGSQDTLEKISFVGNELGRW 421
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1344125038|gb|PPD97602.1| (hypothetical protein GOBAR_DD05374 [Gossypium barbadense]) HSP 1 Score: 178.333 bits (451), Expect = 4.555e-49 Identity = 82/148 (55.41%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQ 148
MDR ALDVG A+ ++VAIDWKD GGW EF+R K+ IN+LKPLRR+VKL+ ++G ++KY+RL DFCY+ GLIGH+ KTCK+ G NE+NLQYGSW+R P+ +P Q R IRRN VE++ +KT ++ D EE +SD R Q
Sbjct: 94 MDRQMALDVGNALSELVAIDWKDCNGGWTEFVRIKVKINVLKPLRRVVKLLDKEGTEVIGVIKYERLPDFCYVCGLIGHSSKTCKHNKEGSALNESNLQYGSWMRAPIVIPNQDRNIRRNGVELVNSKTQMNNDKEESQSDSRGESEQ 241 HSP 2 Score: 93.9745 bits (232), Expect = 1.378e-18 Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 0
Query: 153 SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
SDHEAI+MD G +P DP+ WFRYD CW KE+EA DI+++IW +NLL+K++LIR++LGPW
Sbjct: 466 SDHEAILMDLYGSQPKQQGYDPKVWFRYDRCWAKEREARDIISNIWLNKGTNLLEKMELIRERLGPW 532
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1347691908|gb|PPR92754.1| (hypothetical protein GOBAR_AA27921 [Gossypium barbadense]) HSP 1 Score: 172.555 bits (436), Expect = 1.573e-47 Identity = 80/157 (50.96%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEA 157
MDR A+DVG A+G++VAIDWKDR GGW EFMR K+ I+ILKPLRR+V++V +D ++KY+RL DFCY+ GLIGHT+K C N G N++NLQYGSW+R P+ P Q RG+RRN VE++ ++ ++ ++EE S+ R C Q +A
Sbjct: 137 MDRQMAIDVGNALGELVAIDWKDRFGGWTEFMRIKVKIDILKPLRRVVRIVDKDRGERIGVIKYERLSDFCYICGLIGHTLKLCNNNKGGMELNDSNLQYGSWMRAPIVTPIQERGLRRNGVELVKSRPRVNEENEERLSNSREECEQHGAKGKEKA 293
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1344110934|gb|PPD84469.1| (hypothetical protein GOBAR_DD18598 [Gossypium barbadense]) HSP 1 Score: 171.785 bits (434), Expect = 1.683e-47 Identity = 97/198 (48.99%), Postives = 121/198 (61.11%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKPGDNNTDPR-TWFRYDACWNKEKEAHDIVTSI 197
MDR TALDVG AIG++VAIDWKDR GGW EF+R KI INI P+RR+VK VGRD C LKY+RL FCY GLIGHTVK CK+K N NLQYGSWLRV Q RGI RN +EIM KT + D E ++D R Q ++ + + ++L DN+ R T F +A NK + + D++ +
Sbjct: 136 MDRQTALDVGNAIGELVAIDWKDRNGGWTEFLRLKIKINISNPVRRVVKFVGRDEIEIICALKYERLPTFCYYCGLIGHTVKKCKSKDRDSGFNVLNLQYGSWLRVNFVASNQERGIGRNGIEIMVKKTPPNEDKEGSKTDTREDSGQMEQKRNEKGCEEESL-----DNDNSFRFTGFYGNADPNKRRSSWDMLRKV 328
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1347681986|gb|PPR85315.1| (hypothetical protein GOBAR_AA35374 [Gossypium barbadense]) HSP 1 Score: 167.162 bits (422), Expect = 5.240e-47 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAI 158
MDR + VG AIG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKLV R G T ++KY+RL DFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ T T + D EE +++ R+ Q + + + +
Sbjct: 147 MDRQLVVAVGNAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLVSRYGGETIEVIKYERLPDFCYMCGLIGHTFKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTTITANEDKEESQTNSRDESGQSAQKGNEKEV 304
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|763794260|gb|KJB61256.1| (hypothetical protein B456_009G348300 [Gossypium raimondii]) HSP 1 Score: 167.933 bits (424), Expect = 7.908e-47 Identity = 77/167 (46.11%), Postives = 111/167 (66.47%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAIIMDTLGCKP 167
++R LDV A+G++VAIDW+DR GGW EF+R K+ IN+LKPLRR+VK++ R+G ++KY+RL DFCY G+IGH+ K C++ NE+NLQYGSW+R P+ PTQ R IRRN VE+M +K ++AD EE +S+ R Q + + +++ P
Sbjct: 146 LERQMVLDVRNALGELVAIDWRDRNGGWTEFVRIKVKINVLKPLRRVVKVLDREGTEVIGVIKYERLPDFCYGCGIIGHSSKICRHNKEASKLNESNLQYGSWMRAPLVYPTQDRNIRRNGVELMKSKDQMNADREESQSNSRGESEQMGQKGKETSGEEESMSTSP 312
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1347711357|gb|PPS08715.1| (hypothetical protein GOBAR_AA11939 [Gossypium barbadense]) HSP 1 Score: 172.555 bits (436), Expect = 1.151e-46 Identity = 82/158 (51.90%), Postives = 108/158 (68.35%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDENSDHEAI 158
MDR A++VG+AIG++VAIDWKDR G W EFMR K+ I+I KPLRRIVKL R G T ++KY+RLLDFCY+ GLIGHT K CK+ G N++N QYGSW+R P P Q R +RRN VEI+ T T + D EE +++ R+ Q + + + +
Sbjct: 147 MDRQLAVEVGSAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLASRYGGETIGVIKYERLLDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPNQERNMRRNGVEIVKTTITANEDKEESQTNSRDESGQSAQKGNEKGV 304
BLAST of Gar11G30040 vs. NCBI nr
Match: gi|1344129588|gb|PPE01936.1| (hypothetical protein GOBAR_DD01012 [Gossypium barbadense]) HSP 1 Score: 173.326 bits (438), Expect = 2.821e-46 Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 1 MDRSTALDVGTAIGKVVAIDWKDRIGGWPEFMRPKIMINILKPLRRIVKLVGRDGRVTTCMLKYKRLLDFCYLFGLIGHTVKTCKNKLPGPVSNEANLQYGSWLRVPVAVPTQGRGIRRNRVEIMATKTTLSADSEECRSDMRNRCRQPDE 151
+DR T L++G AIG+++AIDWKDR GGW EFMR K+MINILKPLRR+VKLV R+G T ++KY+RL DFCY GLIGH+ + C++ G N N QYG WLRVP+ P Q RG+RRN VE++ +K +D EE ++ R + P++
Sbjct: 147 IDRQTTLNIGNAIGELMAIDWKDRDGGWTEFMRIKVMINILKPLRRVVKLVDREGMETIGVIKYERLPDFCYACGLIGHSFRACESNKEGVGQNGLNYQYGGWLRVPIVNPNQDRGMRRNGVELVKSKDHTDSDKEESHTNSRGKSGLPEQ 297 HSP 2 Score: 75.8702 bits (185), Expect = 2.352e-12 Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0
Query: 153 SDHEAIIMDTLGCKPGDNNTDPRTWFRYDACWNKEKEAHDIVTSIWSKSESNLLDKLKLIRKKLGPW 219
SDHE I+++T+G K + + + FRYDACW KE+EA DI+ IW S++L K+ ++RK+LGPW
Sbjct: 471 SDHEVILLNTIGNKSEEESCNHSLRFRYDACWAKEQEARDIIKRIWDGKNSDMLTKMDMVRKELGPW 537 The following BLAST results are available for this feature:
BLAST of Gar11G30040 vs. ExPASy TrEMBL
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Gar11G30040 vs. ExPASy Swiss-Prot
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs UniProt Swissprot) Total hits: 0
BLAST of Gar11G30040 vs. Araport11
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs arabidopsis Araport11) Total hits: 0
BLAST of Gar11G30040 vs. NCBI nr
Analysis Date: 2020-04-22 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs NCBI nr) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium arboreum proteins
Date Performed: 2020-04-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Gar11G30040_WHU-A2_v1 ID=Gar11G30040_WHU-A2_v1; Name=Gar11G30040; organism=Gossypium arboreum; type=mRNA; length=660bpback to top protein sequence of Gar11G30040_WHU-A2_v1 >Gar11G30040_WHU-A2_v1 ID=Gar11G30040_WHU-A2_v1; Name=Gar11G30040_WHU-A2_v1; organism=Gossypium arboreum; type=polypeptide; length=219bpback to top mRNA from alignment at Chr11:102391796..102393325- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Gar11G30040_WHU-A2_v1 ID=Gar11G30040_WHU-A2_v1; Name=Gar11G30040; organism=Gossypium arboreum; type=mRNA; length=1530bp; location=Sequence derived from: Chr11:102391796..102393325- (Gossypium arboreumback to top Coding sequence (CDS) from alignment at Chr11:102391796..102393325- >Gar11G30040_WHU-A2_v1 ID=Gar11G30040_WHU-A2_v1; Name=Gar11G30040; organism=Gossypium arboreum; type=CDS; length=660bp; location=Sequence derived from: Chr11:102391796..102393325- (Gossypium arboreumback to top |