Gar02G14530, Gar02G14530_WHU-A2_v1 (mRNA) Gossypium arboreum

Transcript Overview
NameGar02G14530
Unique NameGar02G14530_WHU-A2_v1
TypemRNA
OrganismGossypium arboreum (Tree cotton)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:83145253..83145579 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
awhwR0700Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awbhR1193Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
awbzR0890Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
awgauR0572Gossypium australe (G2) genome CRI_v1.1Gossypium australe
awgbR0686Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
awghR0660Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
awghtR0842Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awghzR0758Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
awhnR0950Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
awrjR0523Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
awhzR0837Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
awhzR0853Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
awtwR0853Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
awdtoR0473Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
awdttR0487Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
awdttR0516Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
awgtiR0696Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
awgroR0767Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
awgosR0676Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
awgrhR0696Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
awgahR0652Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
awndmR0856Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
awpimR0900Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
awd3kR0528Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
awbarR0835Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
awbarR0853Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
awbarR0856Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
awb1jR0720Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
awgszR0710Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
awgcfR0519Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
awe1hR0722Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
awf1hR0729Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
awf1hR0733Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
awf1hR0740Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
awd8cR0689Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
awpscR0836Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
awpscR0854Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
awpscR0857Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
awg2bR0890Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
awgbmR0866Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
awazbR0896Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
awyumR0868Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
awg7iR0897Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
awazkR0889Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
a3zawL0938Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
a3zawL1382Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
awg6bR0882Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
awg7bR0897Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
awj1hR0876Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
awcegR0891Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
awtmhR277Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
awd3hR0619Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
aemawL0844Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemawL1261Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
awazmR0844Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Giza7.A02G001558.mRNA1Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
GhirA02G017800.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
GB_A02G1495Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
GB0666.A02G001299.mRNA1Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
JH1.A02G001503.mRNA1Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
GB0333.A02G001450.mRNA1Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
GB0307.A02G001422.mRNA1Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
K101.A02G001461.mRNA1Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gar02G14530.geneGar02G14530.gene_WHU-A2_v1Gossypium arboreumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gar02G14530.CDS1Gar02G14530.CDS1_WHU-A2_v1Gossypium arboreumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gar02G14530Gar02G14530_WHU-A2_v1-proteinGossypium arboreumpolypeptide
Gar02G14530_WHU-A2_v1Gar02G14530_WHU-A2_v1Gossypium arboreumpolypeptide


Homology
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5W912_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33139 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.445e-45
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +AL+ G AIG LM IDWKD+N  WTEFMRLK KI+ISKP RR+VK VS  GEE I V+KYE+L DFCYLCGLIGHT ++C N R GD+++  NLQYG+WMR PFV P+
Sbjct:   98 LALDVGNAIGALMAIDWKDRNGAWTEFMRLKVKIDISKPLRRVVKFVSDAGEEMIGVIKYERLPDFCYLCGLIGHTTRRCQNNRAGDVIEDSNLQYGSWMRVPFVNPT 205
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5W2M4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35374 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.605e-45
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 0 
Query:    6 GKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            G AIGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKLVS+ G ETI V+KYE+L DFCY+CGLIGHTF+ C + REG  ++  N QYG+WMR PFV P+
Sbjct:  156 GNAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLVSRYGGETIEVIKYERLPDFCYMCGLIGHTFKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 258
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5WJJ7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29434 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.023e-42
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G AIGEL+ IDWKD+N  WTEFMRLK KINISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT +   + REGD ++  N QYG+WMR PF+ P+
Sbjct:  151 LAVEVGNAIGELVAIDWKDRNGAWTEFMRLKVKINISKPLRRIVKLASRYGGETIGVIKYERLPDFCYVCGLIGHTSKNYKDNREGDGINDSNAQYGSWMRAPFMNPN 258
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5Y2I8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10888 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.863e-42
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G  IGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT + C + REG  ++  N QYG+WMR PFV P+
Sbjct:   98 LAVEVGNTIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLESRYGGETIGVIKYERLPDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 205
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5RP11_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD14579 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.066e-41
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            AL+ G AIGEL+ IDWKD+N GWTEF+R+K KIN+  P RR+VKLV KDG ETI VLKYE+L DFCY CG IGHT + C   +E +++ GLN Q+G+W+R P V+P+
Sbjct:  152 ALDIGNAIGELVAIDWKDRNGGWTEFIRIKVKINVLNPLRRVVKLVDKDGTETIGVLKYERLPDFCYECGKIGHTVKTCTINKESELMSGLNPQFGSWLRAPIVSPN 258
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5XZD0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11939 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.920e-41
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G AIGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT + C + REG  ++  N QYG+WMR PFV P+
Sbjct:  151 LAVEVGSAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLASRYGGETIGVIKYERLLDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 258
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A0D2TX01_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_009G348600 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.096e-40
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVT 106
            MAL+ G AIG+L+ IDWKD+N GWTEFMRLK KIN+ KP RRIVKLV +DG ETI +LKY++L D CY CG+IGHT +KC   +E D V+GL+ QYG+WMR P  T
Sbjct:  157 MALDIGNAIGDLVAIDWKDRNGGWTEFMRLKVKINVLKPLRRIVKLVGRDGTETIGLLKYKRLPDSCYECGIIGHTVKKCTLIKENDGVNGLSPQYGSWMRAPIGT 262
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5SS72_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01012 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.971e-40
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
             LN G AIGELM IDWKD++ GWTEFMR+K  INI KP RR+VKLV ++G ETI V+KYE+L DFCY CGLIGH+F+ C + +EG   +GLN QYG W+R P V P+
Sbjct:  152 TLNIGNAIGELMAIDWKDRDGGWTEFMRIKVMINILKPLRRVVKLVDREGMETIGVIKYERLPDFCYACGLIGHSFRACESNKEGVGQNGLNYQYGGWLRVPIVNPN 258
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A0D2UBB3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G088000 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.063e-40
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            AL+ G AIGEL+ IDWKD+N GWTEF+R+K KIN+  P RR+VKLV KDG ETI VLKYE+L DFCY CG IGH  + C    E +++ GLN Q+G+W+R P V+P+
Sbjct:  141 ALDIGNAIGELVAIDWKDRNGGWTEFIRIKVKINVLNPLRRVVKLVDKDGTETIGVLKYERLPDFCYECGKIGHIVKTCTINNESEVMSGLNPQFGSWLRAPIVSPN 247
[Close]
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Match: A0A2P5WNU7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27921 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.324e-39
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTP 107
            MA++ G A+GEL+ IDWKD+  GWTEFMR+K KI+I KP RR+V++V KD  E I V+KYE+LSDFCY+CGLIGHT + C+N + G  ++  NLQYG+WMR P VTP
Sbjct:  141 MAIDVGNALGELVAIDWKDRFGGWTEFMRIKVKIDILKPLRRVVRIVDKDRGERIGVIKYERLSDFCYICGLIGHTLKLCNNNKGGMELNDSNLQYGSWMRAPIVTP 247
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347685129|gb|PPR87541.1| (hypothetical protein GOBAR_AA33139 [Gossypium barbadense])

HSP 1 Score: 162.925 bits (411), Expect = 1.720e-45
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +AL+ G AIG LM IDWKD+N  WTEFMRLK KI+ISKP RR+VK VS  GEE I V+KYE+L DFCYLCGLIGHT ++C N R GD+++  NLQYG+WMR PFV P+
Sbjct:   98 LALDVGNAIGALMAIDWKDRNGAWTEFMRLKVKIDISKPLRRVVKFVSDAGEEMIGVIKYERLPDFCYLCGLIGHTTRRCQNNRAGDVIEDSNLQYGSWMRVPFVNPT 205
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347681986|gb|PPR85315.1| (hypothetical protein GOBAR_AA35374 [Gossypium barbadense])

HSP 1 Score: 157.147 bits (396), Expect = 7.863e-45
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 0 
Query:    6 GKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            G AIGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKLVS+ G ETI V+KYE+L DFCY+CGLIGHTF+ C + REG  ++  N QYG+WMR PFV P+
Sbjct:  156 GNAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLVSRYGGETIEVIKYERLPDFCYMCGLIGHTFKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 258
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347690000|gb|PPR91253.1| (hypothetical protein GOBAR_AA29434 [Gossypium barbadense])

HSP 1 Score: 152.525 bits (384), Expect = 3.599e-42
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G AIGEL+ IDWKD+N  WTEFMRLK KINISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT +   + REGD ++  N QYG+WMR PF+ P+
Sbjct:  151 LAVEVGNAIGELVAIDWKDRNGAWTEFMRLKVKINISKPLRRIVKLASRYGGETIGVIKYERLPDFCYVCGLIGHTSKNYKDNREGDGINDSNAQYGSWMRAPFMNPN 258
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347712781|gb|PPS09761.1| (hypothetical protein GOBAR_AA10888 [Gossypium barbadense])

HSP 1 Score: 150.214 bits (378), Expect = 9.360e-42
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G  IGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT + C + REG  ++  N QYG+WMR PFV P+
Sbjct:   98 LAVEVGNTIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLESRYGGETIGVIKYERLPDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 205
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1344115291|gb|PPD88490.1| (hypothetical protein GOBAR_DD14579 [Gossypium barbadense])

HSP 1 Score: 147.132 bits (370), Expect = 2.459e-41
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            AL+ G AIGEL+ IDWKD+N GWTEF+R+K KIN+  P RR+VKLV KDG ETI VLKYE+L DFCY CG IGHT + C   +E +++ GLN Q+G+W+R P V+P+
Sbjct:  152 ALDIGNAIGELVAIDWKDRNGGWTEFIRIKVKINVLNPLRRVVKLVDKDGTETIGVLKYERLPDFCYECGKIGHTVKTCTINKESELMSGLNPQFGSWLRAPIVSPN 258
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347711357|gb|PPS08715.1| (hypothetical protein GOBAR_AA11939 [Gossypium barbadense])

HSP 1 Score: 152.525 bits (384), Expect = 4.666e-41
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            +A+  G AIGEL+ IDWKD+N  WTEFMRLK KI+ISKP RRIVKL S+ G ETI V+KYE+L DFCY+CGLIGHT + C + REG  ++  N QYG+WMR PFV P+
Sbjct:  151 LAVEVGSAIGELVAIDWKDRNGAWTEFMRLKVKIDISKPLRRIVKLASRYGGETIGVIKYERLLDFCYVCGLIGHTSKNCKDNREGAGINDSNAQYGSWMRAPFVNPN 258
[Close]
BLAST of Gar02G14530 vs. NCBI nr
Match: gi|763794263|gb|KJB61259.1| (hypothetical protein B456_009G348600, partial [Gossypium raimondii])

HSP 1 Score: 144.05 bits (362), Expect = 1.304e-40
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVT 106
            MAL+ G AIG+L+ IDWKD+N GWTEFMRLK KIN+ KP RRIVKLV +DG ETI +LKY++L D CY CG+IGHT +KC   +E D V+GL+ QYG+WMR P  T
Sbjct:  157 MALDIGNAIGDLVAIDWKDRNGGWTEFMRLKVKINVLKPLRRIVKLVGRDGTETIGLLKYKRLPDSCYECGIIGHTVKKCTLIKENDGVNGLSPQYGSWMRAPIGT 262
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BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1344129588|gb|PPE01936.1| (hypothetical protein GOBAR_DD01012 [Gossypium barbadense])

HSP 1 Score: 149.828 bits (377), Expect = 9.489e-40
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
             LN G AIGELM IDWKD++ GWTEFMR+K  INI KP RR+VKLV ++G ETI V+KYE+L DFCY CGLIGH+F+ C + +EG   +GLN QYG W+R P V P+
Sbjct:  152 TLNIGNAIGELMAIDWKDRDGGWTEFMRIKVMINILKPLRRVVKLVDREGMETIGVIKYERLPDFCYACGLIGHSFRACESNKEGVGQNGLNYQYGGWLRVPIVNPN 258
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BLAST of Gar02G14530 vs. NCBI nr
Match: gi|763798331|gb|KJB65286.1| (hypothetical protein B456_010G088000 [Gossypium raimondii])

HSP 1 Score: 144.436 bits (363), Expect = 9.598e-40
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 0 
Query:    2 ALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTPS 108
            AL+ G AIGEL+ IDWKD+N GWTEF+R+K KIN+  P RR+VKLV KDG ETI VLKYE+L DFCY CG IGH  + C    E +++ GLN Q+G+W+R P V+P+
Sbjct:  141 ALDIGNAIGELVAIDWKDRNGGWTEFIRIKVKINVLNPLRRVVKLVDKDGTETIGVLKYERLPDFCYECGKIGHIVKTCTINNESEVMSGLNPQFGSWLRAPIVSPN 247
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BLAST of Gar02G14530 vs. NCBI nr
Match: gi|1347691908|gb|PPR92754.1| (hypothetical protein GOBAR_AA27921 [Gossypium barbadense])

HSP 1 Score: 144.821 bits (364), Expect = 7.528e-39
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:    1 MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKDGEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWMRTPFVTP 107
            MA++ G A+GEL+ IDWKD+  GWTEFMR+K KI+I KP RR+V++V KD  E I V+KYE+LSDFCY+CGLIGHT + C+N + G  ++  NLQYG+WMR P VTP
Sbjct:  141 MAIDVGNALGELVAIDWKDRFGGWTEFMRIKVKIDILKPLRRVVRIVDKDRGERIGVIKYERLSDFCYICGLIGHTLKLCNNNKGGMELNDSNLQYGSWMRAPIVTP 247
The following BLAST results are available for this feature:
BLAST of Gar02G14530 vs. ExPASy TrEMBL
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5W912_GOSBA1.445e-4566.67Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5W2M4_GOSBA6.605e-4567.96Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5WJJ7_GOSBA3.023e-4263.89Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5Y2I8_GOSBA7.863e-4262.96Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5RP11_GOSBA2.066e-4160.75Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5XZD0_GOSBA3.920e-4163.89Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2TX01_GOSRA1.096e-4064.15Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A2P5SS72_GOSBA7.971e-4062.62Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2UBB3_GOSRA8.063e-4059.81Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P5WNU7_GOSBA6.324e-3960.75Uncharacterized protein OS=Gossypium barbadense OX... [more]
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BLAST of Gar02G14530 vs. ExPASy Swiss-Prot
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Gar02G14530 vs. Araport11
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Gar02G14530 vs. NCBI nr
Analysis Date: 2020-04-22 (BLASTP of WHU_v1_a1 Gossypium arboreum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1347685129|gb|PPR87541.1|1.720e-4566.67hypothetical protein GOBAR_AA33139 [Gossypium barb... [more]
gi|1347681986|gb|PPR85315.1|7.863e-4567.96hypothetical protein GOBAR_AA35374 [Gossypium barb... [more]
gi|1347690000|gb|PPR91253.1|3.599e-4263.89hypothetical protein GOBAR_AA29434 [Gossypium barb... [more]
gi|1347712781|gb|PPS09761.1|9.360e-4262.96hypothetical protein GOBAR_AA10888 [Gossypium barb... [more]
gi|1344115291|gb|PPD88490.1|2.459e-4160.75hypothetical protein GOBAR_DD14579 [Gossypium barb... [more]
gi|1347711357|gb|PPS08715.1|4.666e-4163.89hypothetical protein GOBAR_AA11939 [Gossypium barb... [more]
gi|763794263|gb|KJB61259.1|1.304e-4064.15hypothetical protein B456_009G348600, partial [Gos... [more]
gi|1344129588|gb|PPE01936.1|9.489e-4062.62hypothetical protein GOBAR_DD01012 [Gossypium barb... [more]
gi|763798331|gb|KJB65286.1|9.598e-4059.81hypothetical protein B456_010G088000 [Gossypium ra... [more]
gi|1347691908|gb|PPR92754.1|7.528e-3960.75hypothetical protein GOBAR_AA27921 [Gossypium barb... [more]
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InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium arboreum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 35..81
e-value: 3.2E-12
score: 46.0
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286FAMILY NOT NAMEDcoord: 6..93
NoneNo IPR availablePANTHERPTHR31286:SF26coord: 6..93

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gar02G14530_WHU-A2_v1 ID=Gar02G14530_WHU-A2_v1; Name=Gar02G14530; organism=Gossypium arboreum; type=mRNA; length=327bp
ATGGCATTGAATGAGGGGAAAGCTATCGGGGAACTTATGGTGATTGACTG
GAAGGACCAAAATGAAGGATGGACAGAGTTTATGAGGCTGAAAGATAAAA
TTAACATCTCCAAACCCTTCAGAAGAATTGTGAAACTAGTCAGCAAAGAC
GGGGAGGAAACAATAACGGTTCTAAAATATGAGAAGCTCTCGGACTTTTG
CTATTTGTGTGGGTTGATAGGACATACCTTCCAAAAGTGTCATAATAAGA
GGGAGGGGGATATGGTTGATGGGTTAAACCTTCAGTATGGGGCTTGGATG
AGGACACCTTTTGTGACCCCGAGTTAA
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protein sequence of Gar02G14530_WHU-A2_v1

>Gar02G14530_WHU-A2_v1 ID=Gar02G14530_WHU-A2_v1; Name=Gar02G14530_WHU-A2_v1; organism=Gossypium arboreum; type=polypeptide; length=108bp
MALNEGKAIGELMVIDWKDQNEGWTEFMRLKDKINISKPFRRIVKLVSKD
GEETITVLKYEKLSDFCYLCGLIGHTFQKCHNKREGDMVDGLNLQYGAWM
RTPFVTPS
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mRNA from alignment at Chr02:83145253..83145579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gar02G14530_WHU-A2_v1 ID=Gar02G14530_WHU-A2_v1; Name=Gar02G14530; organism=Gossypium arboreum; type=mRNA; length=327bp; location=Sequence derived from: Chr02:83145253..83145579+ (Gossypium arboreum
ATGGCATTGAATGAGGGGAAAGCTATCGGGGAACTTATGGTGATTGACTG
GAAGGACCAAAATGAAGGATGGACAGAGTTTATGAGGCTGAAAGATAAAA
TTAACATCTCCAAACCCTTCAGAAGAATTGTGAAACTAGTCAGCAAAGAC
GGGGAGGAAACAATAACGGTTCTAAAATATGAGAAGCTCTCGGACTTTTG
CTATTTGTGTGGGTTGATAGGACATACCTTCCAAAAGTGTCATAATAAGA
GGGAGGGGGATATGGTTGATGGGTTAAACCTTCAGTATGGGGCTTGGATG
AGGACACCTTTTGTGACCCCGAGTTAA
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Coding sequence (CDS) from alignment at Chr02:83145253..83145579+

>Gar02G14530_WHU-A2_v1 ID=Gar02G14530_WHU-A2_v1; Name=Gar02G14530; organism=Gossypium arboreum; type=CDS; length=327bp; location=Sequence derived from: Chr02:83145253..83145579+ (Gossypium arboreum
ATGGCATTGAATGAGGGGAAAGCTATCGGGGAACTTATGGTGATTGACTG
GAAGGACCAAAATGAAGGATGGACAGAGTTTATGAGGCTGAAAGATAAAA
TTAACATCTCCAAACCCTTCAGAAGAATTGTGAAACTAGTCAGCAAAGAC
GGGGAGGAAACAATAACGGTTCTAAAATATGAGAAGCTCTCGGACTTTTG
CTATTTGTGTGGGTTGATAGGACATACCTTCCAAAAGTGTCATAATAAGA
GGGAGGGGGATATGGTTGATGGGTTAAACCTTCAGTATGGGGCTTGGATG
AGGACACCTTTTGTGACCCCGAGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025836Zn_knuckle_CX2CX4HX4C
IPR040256At4g02000-like