Gothu.00029354-RA, Gothu.00029354-RA_ISU-D1_v1 (mRNA) Gossypium thurberi

Transcript Overview
NameGothu.00029354-RA
Unique NameGothu.00029354-RA_ISU-D1_v1
TypemRNA
OrganismGossypium thurberi (G. thurberi)
Sequence length484
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM013383.1_chr06chromosomeCM013383.1_chr06:19179988..19180221 +Gossypium thurberi (D1-35) genome ISU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abdtL1291Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
acdtL0356Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acdtL0583Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acdtL0602Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
bzdtL0522Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzdtL0530Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
dtfnR0778Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR0796Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR0802Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR0862Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
bzdtL1666Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzdtL1885Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
dtgbR0800Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR0811Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR0870Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR0881Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtghR0805Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR0819Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR0870Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR0881Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghzR0908Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghzR0922Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghtR0979Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghzR0977Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghtR0993Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghzR0990Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghtR1054Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghtR1065Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghtR1069Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtgrbR0731Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgrbR0744Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgrbR0749Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgtbR0798Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtgtbR0814Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtgtbR0816Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtrbR1121Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dtrjR517Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dtrjR550Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dthnR1092Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1102Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1160Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1170Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1187Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1191Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthzR1022Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1035Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1043Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1103Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1115Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1117Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthwR0870Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR0896Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR0903Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dttwR1052Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1065Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1124Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1140Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
awdtL0314Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awdtL0542Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
dtdtoR568Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtdttR538Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtdtoR573Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtdttR569Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dfidtL131Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL568Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL572Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dtgtiR0826Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR0831Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR0867Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR0879Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dsidtL239Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsidtL549Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dqidtL147Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL712Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL832Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dtgroR0914Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR0934Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR0942Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium

Orthologs
Gene/TranscriptAssemblySpecies
EVM_prediction_Ga13G1289Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS:JABEZY|Gogos_00014887-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gothu.00029354Gothu.00029354_ISU-D1_v1Gossypium thurberigene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00029354-RA:cdsGothu.00029354-RA.cds.1_ISU-D1_v1Gossypium thurberiCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00029354-RA:exon:5239Gothu.00029354-RA.exon.1_ISU-D1_v1Gossypium thurberiexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00029354-RAGothu.00029354-RA_ISU-D1_v1-proteinGossypium thurberipolypeptide
Gothu.00029354-RA_ISU-D1_v1Gothu.00029354-RA_ISU-D1_v1Gossypium thurberipolypeptide


Homology
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A1U8LEY8_GOSHI (uncharacterized protein LOC107888836 OS=Gossypium hirsutum OX=3635 GN=LOC107926770 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.305e-44
Identity = 77/137 (56.20%), Postives = 86/137 (62.77%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TLHS+FFEDVNN+I +ENE+EN RNDVHILND                                   QIGGA RLS Q EKLCN  DNM Q T SL P MDPYGIPQAV +LD+M+EE+
Sbjct:    1 MFMGIVATGDKAWAPSSGTLHSDFFEDVNNEIPEENEDENVRNDVHILNDVQISNDVHIDRNGQKRKPPEISSSHFKPGRKKSLKQIGGAARLSSQTEKLCNAADNMSQATSSLTPVMDPYGIPQAVKVLDSMAEEV 137
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A0D2VWH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G070700 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.013e-44
Identity = 80/131 (61.07%), Postives = 85/131 (64.89%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSSSTL S+FFEDVNN+I KE+EEEN RNDVHI ND                             QIGGA RLS QIEKLCN  DNM QVT SL P MDPYGIPQ V MLD MSEE+
Sbjct:  120 MFMGIVATGDKAWAPSSSTLRSDFFEDVNNEIPKESEEENMRNDVHISNDVQIDGNSQKRKNPETSSPHFKTGRKKSSKQIGGAARLSSQIEKLCNAADNMSQVTSSLTPVMDPYGIPQTVKMLDRMSEEV 250
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A0D2VG61_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G161600 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.353e-44
Identity = 80/137 (58.39%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MF+G+VAT DKAWTPSS TLHS+FFE+V N I KENEEEN RNDVHILND                                   QIGGATRLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:   81 MFIGIVATGDKAWTPSSGTLHSDFFENVINKIPKENEEENVRNDVHILNDVHISNDVQIDGNGQKRKNPEISSSHFKTERKESSKQIGGATRLSTQIEKLCNATDNMSQATSSLTPVMDPYGIPQAVQVLDSMSEEV 217
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A0D2RKC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G116300 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.776e-42
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FF+DVNN+I + NEEEN RND HILND           QIGGA RLS QIE LC+  DNM   T SL P  DPYGIPQAV MLD+M EE+
Sbjct:    1 MFMGIVATGDKAWAPSSGTLRNDFFQDVNNEIPEGNEEENMRNDAHILNDVHISKIKKSSKQIGGAARLSSQIENLCSAADNMSHATSSLTPITDPYGIPQAVKMLDSMPEEV 113
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A0D2US81_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G116300 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 9.955e-42
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FF+DVNN+I + NEEEN RND HILND           QIGGA RLS QIE LC+  DNM   T SL P  DPYGIPQAV MLD+M EE+
Sbjct:   35 MFMGIVATGDKAWAPSSGTLRNDFFQDVNNEIPEGNEEENMRNDAHILNDVHISKIKKSSKQIGGAARLSSQIENLCSAADNMSHATSSLTPITDPYGIPQAVKMLDSMPEEV 147
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A1U8PQF6_GOSHI (L10-interacting MYB domain-containing protein-like OS=Gossypium hirsutum OX=3635 GN=LOC107961772 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.411e-41
Identity = 76/136 (55.88%), Postives = 86/136 (63.24%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FFEDVNN+I +E++EEN RNDVHI ND                                  QIGGATRLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:  135 MFMGIVATGDKAWAPSSGTLRTDFFEDVNNEIHEEDDEENVRNDVHISNDVHISNDVQIDGNVQKKNPKISSSHFKTGRKKSSKQIGGATRLSSQIEKLCNAADNMSQATSSLTPVMDPYGIPQAVKVLDSMSEEV 270
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A2P5WGV3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30407 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.242e-41
Identity = 75/137 (54.74%), Postives = 85/137 (62.04%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TLHS+FFEDVNN+I +ENE+EN  NDVHILND                                   QIGGA RLS Q EKLCN  DNM + T SL P MDPYGIPQAV +LD+M+EE+
Sbjct:  137 MFMGIVATGDKAWAPSSGTLHSDFFEDVNNEIPEENEDENVGNDVHILNDVQISNDVHIDRNGQKRKPPEISSSHFKPGRKKSLKQIGGAARLSSQTEKLCNAADNMSKATSSLTPVMDPYGIPQAVKVLDSMAEEV 273
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A1U8JUA9_GOSHI (L10-interacting MYB domain-containing protein-like OS=Gossypium hirsutum OX=3635 GN=LOC107909361 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.610e-40
Identity = 77/143 (53.85%), Postives = 85/143 (59.44%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FFEDVNN+I KENEEEN RNDVHI ND                                         QIGGA RLS QIEKLCN  D+M Q T SL P MDP+GIPQAV MLD+MSEE+
Sbjct:  137 MFMGIVATGDKAWAPSSGTLPTDFFEDVNNEIPKENEEENMRNDVHISNDVQISSDVHISNDVQIDGTSQKRKNPEMSSSHFKTGGKKSSKQIGGAARLSSQIEKLCNAADSMSQATSSLTPIMDPFGIPQAVKMLDSMSEEV 279
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A1U8NR58_GOSHI (uncharacterized protein LOC107950937 OS=Gossypium hirsutum OX=3635 GN=LOC107950937 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.468e-40
Identity = 74/135 (54.81%), Postives = 83/135 (61.48%), Query Frame = 0 
Query:    3 MGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MG+VAT DKAW PSS TL S+FFEDVNN+I +E++EEN RNDVHILND                                   QI GA RLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:    1 MGIVATGDKAWAPSSGTLRSDFFEDVNNEIHEEDDEENVRNDVHILNDVHISNDVQIDGNGQKRKNPEISSSHFKTGRKKSSKQIEGAARLSSQIEKLCNATDNMSQATSSLTPVMDPYGIPQAVKVLDSMSEEV 135
[Close]
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Match: A0A2P5XJ64_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17315 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.892e-40
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILNDQIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL S+FFEDVNN+I +E++EEN        + QIGGATRLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:  135 MFMGIVATGDKAWAPSSGTLRSDFFEDVNNEIHEEDDEENTGRKKS--SKQIGGATRLSSQIEKLCNAADNMSQATSSLTPVMDPYGIPQAVKVLDSMSEEV 234
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|823165274|ref|XP_012482571.1| (PREDICTED: uncharacterized protein LOC105797174 [Gossypium raimondii])

HSP 1 Score: 179.489 bits (454), Expect = 2.053e-55
Identity = 93/137 (67.88%), Postives = 97/137 (70.80%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMGVVAT+DKAWTPSSSTLHSE FEDVNNDIIKENEE+NARNDVHILND                                   QIGGATRLSDQIEKLCNVVDNM Q TCSL P MDPYGIPQAVIMLD+MSEE+
Sbjct:    5 MFMGVVATNDKAWTPSSSTLHSEIFEDVNNDIIKENEEDNARNDVHILNDAHISNDVHIDGNGQKRKTPKISTSHFKMGMKKSSKQIGGATRLSDQIEKLCNVVDNMSQATCSLAPVMDPYGIPQAVIMLDSMSEEV 141
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|823253702|ref|XP_012459489.1| (PREDICTED: uncharacterized protein LOC105779988 [Gossypium raimondii])

HSP 1 Score: 155.606 bits (392), Expect = 4.934e-46
Identity = 80/131 (61.07%), Postives = 85/131 (64.89%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSSSTL S+FFEDVNN+I KE+EEEN RNDVHI ND                             QIGGA RLS QIEKLCN  DNM QVT SL P MDPYGIPQ V MLD MSEE+
Sbjct:    1 MFMGIVATGDKAWAPSSSTLRSDFFEDVNNEIPKESEEENMRNDVHISNDVQIDGNSQKRKNPETSSPHFKTGRKKSSKQIGGAARLSSQIEKLCNAADNMSQVTSSLTPVMDPYGIPQTVKMLDRMSEEV 131
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|1028939959|ref|XP_016713187.1| (PREDICTED: uncharacterized protein LOC107926770 [Gossypium hirsutum] >gi|1028939961|ref|XP_016713189.1| PREDICTED: uncharacterized protein LOC107926770 [Gossypium hirsutum] >gi|1029009364|ref|XP_016668565.1| PREDICTED: uncharacterized protein LOC107888836 [Gossypium hirsutum] >gi|1029009366|ref|XP_016668566.1| PREDICTED: uncharacterized protein LOC107888836 [Gossypium hirsutum])

HSP 1 Score: 150.984 bits (380), Expect = 1.553e-44
Identity = 77/137 (56.20%), Postives = 86/137 (62.77%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TLHS+FFEDVNN+I +ENE+EN RNDVHILND                                   QIGGA RLS Q EKLCN  DNM Q T SL P MDPYGIPQAV +LD+M+EE+
Sbjct:    1 MFMGIVATGDKAWAPSSGTLHSDFFEDVNNEIPEENEDENVRNDVHILNDVQISNDVHIDRNGQKRKPPEISSSHFKPGRKKSLKQIGGAARLSSQTEKLCNAADNMSQATSSLTPVMDPYGIPQAVKVLDSMAEEV 137
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|763809153|gb|KJB76055.1| (hypothetical protein B456_012G070700 [Gossypium raimondii])

HSP 1 Score: 154.836 bits (390), Expect = 2.396e-44
Identity = 80/131 (61.07%), Postives = 85/131 (64.89%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSSSTL S+FFEDVNN+I KE+EEEN RNDVHI ND                             QIGGA RLS QIEKLCN  DNM QVT SL P MDPYGIPQ V MLD MSEE+
Sbjct:  120 MFMGIVATGDKAWAPSSSTLRSDFFEDVNNEIPKESEEENMRNDVHISNDVQIDGNSQKRKNPETSSPHFKTGRKKSSKQIGGAARLSSQIEKLCNAADNMSQVTSSLTPVMDPYGIPQTVKMLDRMSEEV 250
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BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|823257802|ref|XP_012461584.1| (PREDICTED: uncharacterized protein LOC105781608 [Gossypium raimondii])

HSP 1 Score: 153.295 bits (386), Expect = 2.710e-44
Identity = 80/137 (58.39%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MF+G+VAT DKAWTPSS TLHS+FFE+V N I KENEEEN RNDVHILND                                   QIGGATRLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:   88 MFIGIVATGDKAWTPSSGTLHSDFFENVINKIPKENEEENVRNDVHILNDVHISNDVQIDGNGQKRKNPEISSSHFKTERKESSKQIGGATRLSTQIEKLCNATDNMSQATSSLTPVMDPYGIPQAVQVLDSMSEEV 224
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|763814942|gb|KJB81794.1| (hypothetical protein B456_013G161600, partial [Gossypium raimondii])

HSP 1 Score: 153.295 bits (386), Expect = 2.801e-44
Identity = 80/137 (58.39%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MF+G+VAT DKAWTPSS TLHS+FFE+V N I KENEEEN RNDVHILND                                   QIGGATRLS QIEKLCN  DNM Q T SL P MDPYGIPQAV +LD+MSEE+
Sbjct:   81 MFIGIVATGDKAWTPSSGTLHSDFFENVINKIPKENEEENVRNDVHILNDVHISNDVQIDGNGQKRKNPEISSSHFKTERKESSKQIGGATRLSTQIEKLCNATDNMSQATSSLTPVMDPYGIPQAVQVLDSMSEEV 217
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|1050633688|ref|XP_017639815.1| (PREDICTED: L10-interacting MYB domain-containing protein-like [Gossypium arboreum])

HSP 1 Score: 152.525 bits (384), Expect = 3.148e-43
Identity = 79/131 (60.31%), Postives = 87/131 (66.41%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VATSDKAW PSS TL S+FFEDVNN+I +E+ EEN RNDVHI ND                             QIGGATRLS QIEKLCN  DNM QVT SL P MDPYGIPQAV +LD+MSEE+
Sbjct:  137 MFMGIVATSDKAWAPSSGTLRSDFFEDVNNEIHEEDGEENVRNDVHISNDVQIDGNGQKRKNPEISSSHFKTGRKKSSKQIGGATRLSSQIEKLCNAADNMSQVTSSLTPVMDPYGIPQAVKVLDSMSEEV 267
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|763804214|gb|KJB71152.1| (hypothetical protein B456_011G116300 [Gossypium raimondii])

HSP 1 Score: 145.206 bits (365), Expect = 3.305e-42
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FF+DVNN+I + NEEEN RND HILND           QIGGA RLS QIE LC+  DNM   T SL P  DPYGIPQAV MLD+M EE+
Sbjct:    1 MFMGIVATGDKAWAPSSGTLRNDFFQDVNNEIPEGNEEENMRNDAHILNDVHISKIKKSSKQIGGAARLSSQIENLCSAADNMSHATSSLTPITDPYGIPQAVKMLDSMPEEV 113
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|1050552931|ref|XP_017621043.1| (PREDICTED: L10-interacting MYB domain-containing protein-like [Gossypium arboreum])

HSP 1 Score: 149.443 bits (376), Expect = 6.000e-42
Identity = 78/137 (56.93%), Postives = 85/137 (62.04%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------------------------------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL S+FFEDVNN+I KENEEEN RNDVHILND                                   QIGGA RLS QIEKLCN  DNM Q T SL P M+PYGIPQ V +LD+MSEE+
Sbjct:  137 MFMGIVATGDKAWAPSSGTLCSDFFEDVNNEIPKENEEENVRNDVHILNDVHISNDVQIYGNGQKRKNPEISSSQFKTGRKKSSKQIGGAARLSSQIEKLCNAADNMSQATSSLTPVMNPYGIPQVVKVLDSMSEEV 273
[Close]
BLAST of Gothu.00029354-RA vs. NCBI nr
Match: gi|763804213|gb|KJB71151.1| (hypothetical protein B456_011G116300 [Gossypium raimondii])

HSP 1 Score: 144.821 bits (364), Expect = 1.185e-41
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:    1 MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND-----------QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSEEL 102
            MFMG+VAT DKAW PSS TL ++FF+DVNN+I + NEEEN RND HILND           QIGGA RLS QIE LC+  DNM   T SL P  DPYGIPQAV MLD+M EE+
Sbjct:   35 MFMGIVATGDKAWAPSSGTLRNDFFQDVNNEIPEGNEEENMRNDAHILNDVHISKIKKSSKQIGGAARLSSQIENLCSAADNMSHATSSLTPITDPYGIPQAVKMLDSMPEEV 147
The following BLAST results are available for this feature:
BLAST of Gothu.00029354-RA vs. ExPASy TrEMBL
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8LEY8_GOSHI1.305e-4456.20uncharacterized protein LOC107888836 OS=Gossypium ... [more]
A0A0D2VWH5_GOSRA2.013e-4461.07Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2VG61_GOSRA2.353e-4458.39Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2RKC9_GOSRA2.776e-4262.83Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2US81_GOSRA9.955e-4262.83Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8PQF6_GOSHI2.411e-4155.88L10-interacting MYB domain-containing protein-like... [more]
A0A2P5WGV3_GOSBA5.242e-4154.74Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8JUA9_GOSHI3.610e-4053.85L10-interacting MYB domain-containing protein-like... [more]
A0A1U8NR58_GOSHI4.468e-4054.81uncharacterized protein LOC107950937 OS=Gossypium ... [more]
A0A2P5XJ64_GOSBA7.892e-4067.65Uncharacterized protein OS=Gossypium barbadense OX... [more]
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BLAST of Gothu.00029354-RA vs. ExPASy Swiss-Prot
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Gothu.00029354-RA vs. Araport11
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Gothu.00029354-RA vs. NCBI nr
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|823165274|ref|XP_012482571.1|2.053e-5567.88PREDICTED: uncharacterized protein LOC105797174 [G... [more]
gi|823253702|ref|XP_012459489.1|4.934e-4661.07PREDICTED: uncharacterized protein LOC105779988 [G... [more]
gi|1028939959|ref|XP_016713187.1|1.553e-4456.20PREDICTED: uncharacterized protein LOC107926770 [G... [more]
gi|763809153|gb|KJB76055.1|2.396e-4461.07hypothetical protein B456_012G070700 [Gossypium ra... [more]
gi|823257802|ref|XP_012461584.1|2.710e-4458.39PREDICTED: uncharacterized protein LOC105781608 [G... [more]
gi|763814942|gb|KJB81794.1|2.801e-4458.39hypothetical protein B456_013G161600, partial [Gos... [more]
gi|1050633688|ref|XP_017639815.1|3.148e-4360.31PREDICTED: L10-interacting MYB domain-containing p... [more]
gi|763804214|gb|KJB71152.1|3.305e-4262.83hypothetical protein B456_011G116300 [Gossypium ra... [more]
gi|1050552931|ref|XP_017621043.1|6.000e-4256.93PREDICTED: L10-interacting MYB domain-containing p... [more]
gi|763804213|gb|KJB71151.1|1.185e-4162.83hypothetical protein B456_011G116300 [Gossypium ra... [more]
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InterPro
Analysis Name: InterProScan Analysis for ISU_v1_a1 Gossypium thurberii proteins
Date Performed: 2020-02-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 1..50
coord: 51..102
NoneNo IPR availablePANTHERPTHR31704:SF35coord: 51..102
NoneNo IPR availablePANTHERPTHR31704:SF35coord: 1..50

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gothu.00029354-RA_ISU-D1_v1 ID=Gothu.00029354-RA_ISU-D1_v1; Name=Gothu.00029354-RA; organism=Gossypium thurberi; type=mRNA; length=484bp
ATGTTCATGGGGGTAGTTGCAACTAGTGATAAAGCATGGACACCTTCTTC
TAGCACACTCCATAGTGAATTTTTTGAGGATGTTAACAATGACATAATTA
AAGAGAATGAGGAAGAAAATGCGAGAAATGATGTTCACATTTTAAATGAT
CAAATTGGAGGGGCTACAAGATTATCTGATCAAATTGAAAAATTATGCAA
TGTAGTTGACAATATGAGACAAGTCACTTGTAGTTTGGATCCTGCTATGG
ATCCATATGGTATTCCACAAGCAGTCATAATGCTTGATAACATGTCGGAG
GAATTGTTTATGTTTGATTTTGGATATAAAATTTGTTCACAGGTGATGTG
AAAGGGAAAAGAAAGAGATTTTACAACGCATGGAATAATTTAACCGGTTA
TTTCTTGTTGCATCTTCTTCTGTGCAATTATATTATGAGAAGTATATATT
GAAGCAACCATGCATGTATTCGAGAGATCCTTGA
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protein sequence of Gothu.00029354-RA_ISU-D1_v1

>Gothu.00029354-RA_ISU-D1_v1 ID=Gothu.00029354-RA_ISU-D1_v1; Name=Gothu.00029354-RA_ISU-D1_v1; organism=Gossypium thurberi; type=polypeptide; length=116bp
MFMGVVATSDKAWTPSSSTLHSEFFEDVNNDIIKENEEENARNDVHILND
QIGGATRLSDQIEKLCNVVDNMRQVTCSLDPAMDPYGIPQAVIMLDNMSE
ELFMFDFGYKICSQVM
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mRNA from alignment at CM013383.1_chr06:19179988..19180221+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gothu.00029354-RA_ISU-D1_v1 ID=Gothu.00029354-RA_ISU-D1_v1; Name=Gothu.00029354-RA; organism=Gossypium thurberi; type=mRNA; length=234bp; location=Sequence derived from: CM013383.1_chr06:19179988..19180221+ (Gossypium thurberi
ATGCAATGCAAGGCATACTTGACGACCCCTGCACCCTCACCCACCCTCGC
TTGTTGTCAAGCCGTGGCTAGCGTTAATGCATCGGCCAGCACCACTCAGC
CACGTAGGGATCTGTGCGAATGTTTCAAAAAGAAGGCCCCGGTTTATGGG
GTTGATCCTCAGAAAGCCAAGCAACTTCCTGGTTTGTGTGCTGTTCAAGT
TCCTTTTCCCTGTGATCCATCAGTCAATTGTCAG
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Coding sequence (CDS) from alignment at CM013383.1_chr06:19179988..19180221+

>Gothu.00029354-RA_ISU-D1_v1 ID=Gothu.00029354-RA_ISU-D1_v1; Name=Gothu.00029354-RA; organism=Gossypium thurberi; type=CDS; length=234bp; location=Sequence derived from: CM013383.1_chr06:19179988..19180221+ (Gossypium thurberi
ATGCAATGCAAGGCATACTTGACGACCCCTGCACCCTCACCCACCCTCGC
TTGTTGTCAAGCCGTGGCTAGCGTTAATGCATCGGCCAGCACCACTCAGC
CACGTAGGGATCTGTGCGAATGTTTCAAAAAGAAGGCCCCGGTTTATGGG
GTTGATCCTCAGAAAGCCAAGCAACTTCCTGGTTTGTGTGCTGTTCAAGT
TCCTTTTCCCTGTGATCCATCAGTCAATTGTCAG
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