EVM_prediction_Ga10G0047, evm.model.Ga10G0047_CRI-A2_v1.0.a1 (mRNA) Gossypium arboreum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1050595065|ref|XP_017619000.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium arboreum]) HSP 1 Score: 219.935 bits (559), Expect = 1.683e-72 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1028979203|ref|XP_016733042.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium hirsutum] >gi|1347686779|gb|PPR88807.1| hypothetical protein GOBAR_AA31889 [Gossypium barbadense]) HSP 1 Score: 218.394 bits (555), Expect = 6.353e-72 Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|823240833|ref|XP_012453023.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium raimondii] >gi|763807383|gb|KJB74321.1| hypothetical protein B456_011G287700 [Gossypium raimondii]) HSP 1 Score: 216.468 bits (550), Expect = 3.721e-71 Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNIS+VVSLYSDMSSNFST+FHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISRVVSLYSDMSSNFSTSFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1344102709|gb|PPD76981.1| (hypothetical protein GOBAR_DD26081 [Gossypium barbadense]) HSP 1 Score: 206.838 bits (525), Expect = 2.884e-67 Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 6 RNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
+NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFST+FHNNGHHKEG
Sbjct: 9 KNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTSFHNNGHHKEG 111
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1269985034|ref|XP_022743516.1| (protein EARLY FLOWERING 4-like [Durio zibethinus]) HSP 1 Score: 176.792 bits (447), Expect = 2.112e-55 Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGH 104
MANNP NN+NKKLKHHRNQDS++ DG+PE WAT DK+FKQVQSVLDRN++LIQQVN NHQSK PDNMVKNVALIQELNGNISKVVSLYSD+SSNFST FH H
Sbjct: 1 MANNPTNNSNKKLKHHRNQDSEEVDGDPEVWATFDKSFKQVQSVLDRNRVLIQQVNQNHQSKIPDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTVFHQKNH 104
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1269906180|ref|XP_022764478.1| (protein EARLY FLOWERING 4-like [Durio zibethinus]) HSP 1 Score: 175.252 bits (443), Expect = 1.003e-54 Identity = 87/108 (80.56%), Postives = 96/108 (88.89%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNP NANKKLKHHRNQDS++ +G+PE WAT DK+FKQVQSVLDRN++LIQQVN+NHQSK PDNMVKNVALIQELNGNISKVVSLYSD+SSNFST F HHK G
Sbjct: 1 MANNPTTNANKKLKHHRNQDSEEVEGDPEVWATFDKSFKQVQSVLDRNRVLIQQVNENHQSKIPDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTMF----HHKNG 104
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1050591005|ref|XP_017616842.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium arboreum]) HSP 1 Score: 170.629 bits (431), Expect = 4.246e-53 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSKN DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKNHDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1347686778|gb|PPR88806.1| (hypothetical protein GOBAR_AA31888 [Gossypium barbadense]) HSP 1 Score: 169.088 bits (427), Expect = 1.584e-52 Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSKN DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKNHDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHINEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|1028951830|ref|XP_016719299.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium hirsutum]) HSP 1 Score: 168.703 bits (426), Expect = 2.802e-52 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSK DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKIQDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Match: gi|823248208|ref|XP_012456776.1| (PREDICTED: protein EARLY FLOWERING 4-like [Gossypium raimondii] >gi|763807384|gb|KJB74322.1| hypothetical protein B456_011G287800 [Gossypium raimondii]) HSP 1 Score: 167.548 bits (423), Expect = 6.593e-52 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSK DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKIHDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT2G40080.1 (| Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111) HSP 1 Score: 117.087 bits (292), Expect = 1.956e-35 Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 0
Query: 10 NKKLKHHRNQDSDDFDG-NPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFH 100
N + K RN + G +P W LD+NF+QVQSVLDRN+ LIQQVNDNHQS+ DNM KNVALIQELNGNISKVV++YSD++++FS+ FH
Sbjct: 4 NGETKRRRNVAEEAEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDLNTSFSSGFH 95
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT2G29950.1 (| Symbols: ELF4-L1 | ELF4-like 1 | chr2:12767790-12768167 FORWARD LENGTH=125) HSP 1 Score: 84.3445 bits (207), Expect = 2.520e-22 Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 29 EAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF 99
E W TL FK+ Q LD+N+ LIQ+VN+NH S+ PDN+ +NV LI E+NGNIS+V+ +YSD+S NF+ F
Sbjct: 36 EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYSDLSLNFAKKF 106
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT2G06255.1 (| Symbols: ELF4-L3 | ELF4-like 3 | chr2:2459336-2459665 FORWARD LENGTH=109) HSP 1 Score: 78.1814 bits (191), Expect = 4.998e-20 Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 33 TLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFH--NNGHHKEG 108
T +K+F QVQ++LD N++LI ++N NH+SK PDN+ +NV LI+ELN N+ +V LY D+S+NFS + + G EG
Sbjct: 23 TFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG 100
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT1G17455.2 (| Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997932-5998276 FORWARD LENGTH=114) HSP 1 Score: 75.0998 bits (183), Expect = 8.239e-19 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 0
Query: 33 TLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTA 98
+ K+F VQ +LD+N++LI ++N NH+SK PDN+ +NV LI+ELN NI +V SLY D+S +F+ +
Sbjct: 22 SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLSHSFARS 87
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT1G17455.1 (| Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997932-5998276 FORWARD LENGTH=114) HSP 1 Score: 75.0998 bits (183), Expect = 8.239e-19 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 0
Query: 33 TLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTA 98
+ K+F VQ +LD+N++LI ++N NH+SK PDN+ +NV LI+ELN NI +V SLY D+S +F+ +
Sbjct: 22 SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLSHSFARS 87
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Match: AT1G72630.1 (| Symbols: ELF4-L2 | ELF4-like 2 | chr1:27344988-27345347 FORWARD LENGTH=119) HSP 1 Score: 70.8626 bits (172), Expect = 3.727e-17 Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 36 KNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTA 98
K+F QVQ +LD+N++LI ++N NH+SK D++ +NV LI+ELN NI V SLY D+S +F+ +
Sbjct: 29 KSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSHSFARS 91
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.711e-34 Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 0
Query: 10 NKKLKHHRNQDSDDFDG-NPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFH 100
N + K RN + G +P W LD+NF+QVQSVLDRN+ LIQQVNDNHQS+ DNM KNVALIQELNGNISKVV++YSD++++FS+ FH
Sbjct: 4 NGETKRRRNVAEEAEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDLNTSFSSGFH 95
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.492e-21 Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 29 EAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF 99
E W TL FK+ Q LD+N+ LIQ+VN+NH S+ PDN+ +NV LI E+NGNIS+V+ +YSD+S NF+ F
Sbjct: 36 EVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYSDLSLNFAKKF 106
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.929e-19 Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 33 TLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFH--NNGHHKEG 108
T +K+F QVQ++LD N++LI ++N NH+SK PDN+ +NV LI+ELN N+ +V LY D+S+NFS + + G EG
Sbjct: 23 TFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG 100
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.142e-17 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 0
Query: 33 TLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTA 98
+ K+F VQ +LD+N++LI ++N NH+SK PDN+ +NV LI+ELN NI +V SLY D+S +F+ +
Sbjct: 22 SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLSHSFARS 87
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.167e-16 Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 36 KNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTA 98
K+F QVQ +LD+N++LI ++N NH+SK D++ +NV LI+ELN NI V SLY D+S +F+ +
Sbjct: 29 KSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSHSFARS 91
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A2P5WCL7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31889 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 5.337e-72 Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A1U8N1S5_GOSHI (protein EARLY FLOWERING 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107943760 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 5.337e-72 Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A0D2UZ10_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G287700 PE=4 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 3.126e-71 Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNIS+VVSLYSDMSSNFST+FHNNGHHKEG
Sbjct: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISRVVSLYSDMSSNFSTSFHNNGHHKEG 108
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A2P5QR20_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26081 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 2.423e-67 Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 6 RNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHNNGHHKEG 108
+NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRN+MLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFST+FHNNGHHKEG
Sbjct: 9 KNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNRMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTSFHNNGHHKEG 111
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A2P5WCL2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31888 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.330e-52 Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSKN DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKNHDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHINEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A1U8M178_GOSHI (protein EARLY FLOWERING 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107931853 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.354e-52 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSK DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKIQDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A0D2RU84_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G287800 PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.538e-52 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSK DNMVKNVALIQELNGNISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKIHDNMVKNVALIQELNGNISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A2P5QQY8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26080 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.130e-51 Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 0
Query: 7 NNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF---HNNGHHKEG 108
NN NKKLKHHRNQDSDD GNPE WAT+DK+FKQVQSVLDRN+MLIQQVN+NHQSK DNMVKNVALIQELN NISKVVSLYSD+SSNFSTAF H+N H KEG
Sbjct: 3 NNTNKKLKHHRNQDSDD--GNPEVWATIDKSFKQVQSVLDRNRMLIQQVNENHQSKIQDNMVKNVALIQELNANISKVVSLYSDLSSNFSTAFQQQHSNEHPKEG 105
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A061FL28_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042505 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.450e-49 Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 0
Query: 1 MANNPRNNANKKLKHHRNQDSDDFDGNPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAFHN-NGHHKEG 108
MAN P +N+KLKHHR+QD ++ +G+PE WAT DK+FKQVQSVLDRN+ LIQQVN NHQSK PDNMVKNVALIQE+NGNISKVVSLYSD+SSNFST FHN N HK G
Sbjct: 1 MANKP--TSNRKLKHHRDQDLEEVEGDPEVWATFDKSFKQVQSVLDRNRALIQQVNQNHQSKIPDNMVKNVALIQEINGNISKVVSLYSDLSSNFSTVFHNRNDDHKNG 107
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Match: A0A1R3FWI0_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30623 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.697e-46 Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 0
Query: 8 NANKKLKHHRNQDSDDFDG-NPEAWATLDKNFKQVQSVLDRNQMLIQQVNDNHQSKNPDNMVKNVALIQELNGNISKVVSLYSDMSSNFSTAF--HNNGHHKEG 108
N+N+KLKH RNQDSDD +G +PE W DKNF+QVQSVLDRN+ LIQQVNDNHQSK PDNMVKNV LIQELNGNISKVVSLYSDMSS+FST F N G K G
Sbjct: 4 NSNRKLKHRRNQDSDDVEGGDPEVWQMFDKNFQQVQSVLDRNRALIQQVNDNHQSKIPDNMVKNVELIQELNGNISKVVSLYSDMSSDFSTVFNQRNGGDRKSG 107 The following BLAST results are available for this feature:
BLAST of EVM_prediction_Ga10G0047 vs. NCBI nr
Analysis Date: 2019-03-07 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs NCBI nr) Total hits: 10
BLAST of EVM_prediction_Ga10G0047 vs. TAIR10
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs arabidopsis TAIR10) Total hits: 6
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy Swiss-Prot
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt Swissprot) Total hits: 5
BLAST of EVM_prediction_Ga10G0047 vs. ExPASy TrEMBL
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for CRI v1.0 Gossypium arboreum proteins
Date Performed: 2019-03-06
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.Ga10G0047_CRI-A2_v1.0.a1 ID=evm.model.Ga10G0047_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga10G0047; organism=Gossypium arboreum; type=mRNA; length=327bpback to top protein sequence of evm.model.Ga10G0047_CRI-A2_v1.0.a1 >evm.model.Ga10G0047_CRI-A2_v1.0.a1 ID=evm.model.Ga10G0047_CRI-A2_v1.0.a1; Name=evm.model.Ga10G0047_CRI-A2_v1.0.a1; organism=Gossypium arboreum; type=polypeptide; length=108bpback to top mRNA from alignment at Chr10_CRI-A2_v1.0.a1:527732..528058+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>evm.model.Ga10G0047_CRI-A2_v1.0.a1 ID=evm.model.Ga10G0047_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga10G0047; organism=Gossypium arboreum; type=mRNA; length=327bp; location=Sequence derived from: Chr10_CRI-A2_v1.0.a1:527732..528058+ (Gossypium arboreumback to top Coding sequence (CDS) from alignment at Chr10_CRI-A2_v1.0.a1:527732..528058+ >evm.model.Ga10G0047_CRI-A2_v1.0.a1 ID=evm.model.Ga10G0047_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga10G0047; organism=Gossypium arboreum; type=CDS; length=327bp; location=Sequence derived from: Chr10_CRI-A2_v1.0.a1:527732..528058+ (Gossypium arboreumback to top |