EVM_prediction_Ga05G2187, evm.model.Ga05G2187_CRI-A2_v1.0.a1 (mRNA) Gossypium arboreum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1050565367|ref|XP_017603204.1| (PREDICTED: protein DCL, chloroplastic-like [Gossypium arboreum] >gi|728832679|gb|KHG12122.1| Protein DCL, chloroplastic [Gossypium arboreum]) HSP 1 Score: 406.757 bits (1044), Expect = 1.217e-143 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1028988959|ref|XP_016749327.1| (PREDICTED: protein DCL, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 404.06 bits (1037), Expect = 1.503e-142 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQD VSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDGVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|823228238|ref|XP_012446884.1| (PREDICTED: protein DCL, chloroplastic-like [Gossypium raimondii] >gi|763791505|gb|KJB58501.1| hypothetical protein B456_009G215500 [Gossypium raimondii]) HSP 1 Score: 402.134 bits (1032), Expect = 7.966e-142 Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARI+SSPCRPWCAAA+PTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPII LVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIVSSPCRPWCAAAEPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIILLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1029048206|ref|XP_016687789.1| (PREDICTED: protein DCL, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 400.593 bits (1028), Expect = 3.784e-141 Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MA PLLLKGIPLLRLRLQRYNCLSARI+SSPCRPWCAAA+PTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPII LVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAGPLLLKGIPLLRLRLQRYNCLSARIVSSPCRPWCAAAEPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIILLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1347677408|gb|PPR82230.1| (hypothetical protein GOBAR_AA38488 [Gossypium barbadense]) HSP 1 Score: 399.823 bits (1026), Expect = 7.867e-140 Identity = 193/196 (98.47%), Postives = 193/196 (98.47%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQD VSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDGVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRAG 196
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1063521114|ref|XP_007017144.2| (PREDICTED: protein DCL, chloroplastic [Theobroma cacao]) HSP 1 Score: 357.451 bits (916), Expect = 4.467e-124 Identity = 170/197 (86.29%), Postives = 182/197 (92.39%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKG PLLRLRLQ YN L+AR++S+P RPWCAAA+ GH++EVSS+EKSS VL+V +PPKYHRWDDPDYRKWKDKEEE+LRDIEPIISL KEILHS RYMDGERLTV DEETVVEKLL HHPHSEDKIGCG D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HFKRGSG
Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCAAAESAGHEEEVSSAEKSSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|508722472|gb|EOY14369.1| (Uncharacterized protein TCM_033766 [Theobroma cacao]) HSP 1 Score: 355.91 bits (912), Expect = 1.799e-123 Identity = 169/197 (85.79%), Postives = 181/197 (91.88%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKG PLLRLRLQ YN L+AR++S+P RPWC AA+ GH++EVSS+EKSS VL+V +PPKYHRWDDPDYRKWKDKEEE+LRDIEPIISL KEILHS RYMDGERLTV DEETVVEKLL HHPHSEDKIGCG D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HFKRGSG
Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCTAAESAGHEEEVSSAEKSSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1269914107|ref|XP_022768711.1| (protein DCL homolog, chloroplastic-like isoform X1 [Durio zibethinus]) HSP 1 Score: 352.443 bits (903), Expect = 3.515e-122 Identity = 171/197 (86.80%), Postives = 178/197 (90.36%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRL RYN L+ IIS+P RPWC AAD G ++E SS EKSS VL+V+DPPKYHRWDDPDYRKWKDKEEE+LRDIEPIISL KEILHS RYMDGERLTVADEETVVEKLLRHHPHSEDKIGCG D IMVDRHP FRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIRE FKR SG
Sbjct: 1 MAAPLLLKGIPLLRLRLPRYNRLTVGIISAPRRPWCVAADSAGQEEEASSVEKSSAVLSVRDPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLAKEILHSDRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGLDSIMVDRHPLFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIRERFKRVSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1204905912|ref|XP_021285265.1| (protein DCL homolog, chloroplastic [Herrania umbratica]) HSP 1 Score: 333.954 bits (855), Expect = 1.010e-114 Identity = 168/197 (85.28%), Postives = 178/197 (90.36%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAA LLLKG PLLRLRLQ YN L+A ++S+P RPWC A+ GH++EVSS+EKSS VL+V DPPKYHRW DPDYRKWKDKEEE+LRDIEPIISL KEILHS RYMDGERLTV DEETVVEKLL HHPHSEDKIGCG D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAALLLLKGFPLLRLRLQHYNPLAAGLLSAPRRPWCTTAESAGHEEEVSSAEKSSTVLSVTDPPKYHRWGDPDYRKWKDKEEEILRDIEPIISLTKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Match: gi|1029126096|ref|XP_016741416.1| (PREDICTED: protein DCL, chloroplastic-like [Gossypium hirsutum]) HSP 1 Score: 318.161 bits (814), Expect = 2.488e-108 Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFK 193
MAA LL KGIPLLRLRLQRYN L+A I SSP RPWCAAA+ TG ++EVSS+EKSS V +V+DP KYH DDPDYRKWKDKEEE+LRDI+PIISL +EILHS+RY DGERLTVADEE VVE LLR+HPHSEDKIGCG D IMVDRHPQFR +RCLFVVRTDGGWIDFSY KCLRAYIRDKYPS AERFI EHF+
Sbjct: 1 MAAHLLRKGIPLLRLRLQRYNLLAAGIPSSPRRPWCAAAESTGLEEEVSSAEKSSAVPSVRDPKKYHMLDDPDYRKWKDKEEEILRDIQPIISLAREILHSNRYKDGERLTVADEEAVVEMLLRYHPHSEDKIGCGLDSIMVDRHPQFRWTRCLFVVRTDGGWIDFSYHKCLRAYIRDKYPSLAERFIGEHFR 193
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT3G46630.1 (| Symbols: | Protein of unknown function (DUF3223) | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 227.639 bits (579), Expect = 3.219e-76 Identity = 118/180 (65.56%), Postives = 137/180 (76.11%), Query Frame = 0
Query: 23 LSARIISSPCRPWCAAAD-PTGHQ--DEVSSSEKS-SVVLTVKDPPKYHRW--DDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
++ I+S R C+ AD P ++ D VS E S + + V P + W +DPDYRKWK+ E E+LRDIEPI L KEILHS RY+DGERL DE+ V+EKLL +HP+S+DKIGCG D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY+RDKYPSHAERFIREHFKR S
Sbjct: 27 VAGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT1G45230.1 (| Symbols: | Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 122.094 bits (305), Expect = 1.194e-34 Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 76 KWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
++ D E+++L P++ V+ ILHS +Y + +RL+ E T++E LL +HP E KIGCG D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF++
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT1G45230.2 (| Symbols: | Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 120.553 bits (301), Expect = 4.384e-34 Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 76 KWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
++ D E+++L P++ V+ ILHS +Y + +RL+ E T++E LL +HP E KIGCG D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF++
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT2G40030.1 (| Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 116.316 bits (290), Expect = 4.496e-30 Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 0
Query: 80 KEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
+E+E+L D+EP++ +++I+H S Y DG+ ++ D+ V+EK+L HP E K+G G D I VD+H F SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F +
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT1G63020.2 (| Symbols: NRPD1A | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 53.5286 bits (127), Expect = 1.914e-8 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0
Query: 86 RDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
++IE + +K ILHS Y E L DE +V+ +L+ HP+S +KIG G I V + + S C VVR DG + DFSY KC+ + P + ++ K G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Match: AT1G63020.1 (| Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 53.5286 bits (127), Expect = 1.914e-8 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0
Query: 86 RDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
++IE + +K ILHS Y E L DE +V+ +L+ HP+S +KIG G I V + + S C VVR DG + DFSY KC+ + P + ++ K G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy Swiss-Prot
Match: DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.656e-33 Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 76 KWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
++ D E+++L P++ V+ ILHS +Y + +RL+ E T++E LL +HP E KIGCG D IMV HP F SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF++
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.790e-33 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 0
Query: 73 DYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
D W D E+++L D P++ V+ ILHS +Y G+RL+ + T++++LL +HP + KIG G D I V HP F +SRCLF+VR DG +DFSY KC++ IR YP +A+ FI HF++
Sbjct: 98 DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 6.232e-29 Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 0
Query: 80 KEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR 194
+E+E+L D+EP++ +++I+H S Y DG+ ++ D+ V+EK+L HP E K+G G D I VD+H F SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F +
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy Swiss-Prot
Match: NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.653e-7 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0
Query: 86 RDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
++IE + +K ILHS Y E L DE +V+ +L+ HP+S +KIG G I V + + S C VVR DG + DFSY KC+ + P + ++ K G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A0B0NHI2_GOSAR (Protein DCL, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_02785 PE=4 SV=1) HSP 1 Score: 406.757 bits (1044), Expect = 1.023e-143 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A1U8PDQ2_GOSHI (protein DCL, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107958153 PE=4 SV=1) HSP 1 Score: 404.06 bits (1037), Expect = 1.262e-142 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQD VSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDGVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A0D2TTC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G215500 PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 6.692e-142 Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKGIPLLRLRLQRYNCLSARI+SSPCRPWCAAA+PTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPII LVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIVSSPCRPWCAAAEPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIILLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A1U8JHJ8_GOSHI (protein DCL, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107905603 PE=4 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 3.179e-141 Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MA PLLLKGIPLLRLRLQRYNCLSARI+SSPCRPWCAAA+PTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPII LVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG
Sbjct: 1 MAGPLLLKGIPLLRLRLQRYNCLSARIVSSPCRPWCAAAEPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIILLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A2P5VTU1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38488 PE=4 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 6.608e-140 Identity = 193/196 (98.47%), Postives = 193/196 (98.47%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGS 196
MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQD VSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKR
Sbjct: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDGVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRAG 196
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A061FIP8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033766 PE=4 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 1.511e-123 Identity = 169/197 (85.79%), Postives = 181/197 (91.88%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLLKG PLLRLRLQ YN L+AR++S+P RPWC AA+ GH++EVSS+EKSS VL+V +PPKYHRWDDPDYRKWKDKEEE+LRDIEPIISL KEILHS RYMDGERLTV DEETVVEKLL HHPHSEDKIGCG D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HFKRGSG
Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCTAAESAGHEEEVSSAEKSSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A1U8NR09_GOSHI (protein DCL, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107951040 PE=4 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 2.090e-108 Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFK 193
MAA LL KGIPLLRLRLQRYN L+A I SSP RPWCAAA+ TG ++EVSS+EKSS V +V+DP KYH DDPDYRKWKDKEEE+LRDI+PIISL +EILHS+RY DGERLTVADEE VVE LLR+HPHSEDKIGCG D IMVDRHPQFR +RCLFVVRTDGGWIDFSY KCLRAYIRDKYPS AERFI EHF+
Sbjct: 1 MAAHLLRKGIPLLRLRLQRYNLLAAGIPSSPRRPWCAAAESTGLEEEVSSAEKSSAVPSVRDPKKYHMLDDPDYRKWKDKEEEILRDIQPIISLAREILHSNRYKDGERLTVADEEAVVEMLLRYHPHSEDKIGCGLDSIMVDRHPQFRWTRCLFVVRTDGGWIDFSYHKCLRAYIRDKYPSLAERFIGEHFR 193
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A2P5W4M5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34692 PE=4 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 3.380e-107 Identity = 155/193 (80.31%), Postives = 169/193 (87.56%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFK 193
MAA LL KGIPLLRLRLQR N L+A I SSP RPWCAAA+ TG ++EVSS+EKSS V +V+DP KYH DDPDYRKWKDKEEE+LRDI+PIISL +EILHS+RY DGERLTVADEE VVE LLR+HPHSEDKIGCG D IMVDRHPQFR +RCLFVVRTDGGWIDFSY KCLRAYIRDKYPS AERFI EHF+
Sbjct: 1 MAAHLLRKGIPLLRLRLQRNNLLAAGIPSSPRRPWCAAAESTGLEEEVSSAEKSSAVPSVRDPKKYHMLDDPDYRKWKDKEEEILRDIQPIISLAREILHSNRYKDGERLTVADEEAVVEMLLRYHPHSEDKIGCGLDSIMVDRHPQFRWTRCLFVVRTDGGWIDFSYHKCLRAYIRDKYPSLAERFIGEHFR 193
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A0D2N9W7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G101200 PE=4 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 1.662e-106 Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFK 193
MAAPLL KGIPLLRLRLQRYN L+A I SP RPWCAAA+ TG ++EVSS+EKSS V +V+DP KYH DDPDYRKWKDKEEE+LRDI+PIISL +EILHS+RY DGE LTVADEE VV+ LLR+HPHSEDKIGCG D IMVDRHPQFR +RCLFVVRT+GGWIDFSY KCLRAYIRDKYPS AERFI EHF+
Sbjct: 1 MAAPLLRKGIPLLRLRLQRYNLLAAGIPPSPRRPWCAAAESTGLEEEVSSAEKSSAVPSVRDPKKYHMLDDPDYRKWKDKEEEILRDIQPIISLAREILHSNRYKDGEGLTVADEEAVVDMLLRYHPHSEDKIGCGLDSIMVDRHPQFRWTRCLFVVRTNGGWIDFSYHKCLRAYIRDKYPSLAERFIGEHFR 193
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Match: A0A067KZT4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16094 PE=4 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 2.872e-101 Identity = 145/197 (73.60%), Postives = 167/197 (84.77%), Query Frame = 0
Query: 1 MAAPLLLKGIPLLRLRLQRYNCLSARIISSPCRPWCAAADPTGHQDEVSSSEKSSVVLTVKDPPKYHRWDDPDYRKWKDKEEEMLRDIEPIISLVKEILHSSRYMDGERLTVADEETVVEKLLRHHPHSEDKIGCGFDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
MAAPLLL+GIPLLRLR ++ L+ RI+S + WC+AAD T +EV+++EKS+ VL+ +DP Y WDDPDYRKWKDKE+E+LRDIEPI L KEILHS RY+DGERLT DE+ VVEKLL +HP+SEDKIG G D IMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYP++AERFIREHFKRGSG
Sbjct: 1 MAAPLLLRGIPLLRLR-HNHHRLAVRILSPLRQSWCSAADSTRLDEEVTTAEKSTAVLSARDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDEKLVVEKLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPTYAERFIREHFKRGSG 196 The following BLAST results are available for this feature:
BLAST of EVM_prediction_Ga05G2187 vs. NCBI nr
Analysis Date: 2019-03-07 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs NCBI nr) Total hits: 10
BLAST of EVM_prediction_Ga05G2187 vs. TAIR10
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs arabidopsis TAIR10) Total hits: 6
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy Swiss-Prot
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt Swissprot) Total hits: 4
BLAST of EVM_prediction_Ga05G2187 vs. ExPASy TrEMBL
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for CRI v1.0 Gossypium arboreum proteins
Date Performed: 2019-03-06
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.Ga05G2187_CRI-A2_v1.0.a1 ID=evm.model.Ga05G2187_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga05G2187; organism=Gossypium arboreum; type=mRNA; length=594bpback to top protein sequence of evm.model.Ga05G2187_CRI-A2_v1.0.a1 >evm.model.Ga05G2187_CRI-A2_v1.0.a1 ID=evm.model.Ga05G2187_CRI-A2_v1.0.a1; Name=evm.model.Ga05G2187_CRI-A2_v1.0.a1; organism=Gossypium arboreum; type=polypeptide; length=197bpback to top mRNA from alignment at Chr05_CRI-A2_v1.0.a1:20273726..20275821+ Legend: exonpolypeptideCDSgenetic_marker Hold the cursor over a type above to highlight its positions in the sequence below.>evm.model.Ga05G2187_CRI-A2_v1.0.a1 ID=evm.model.Ga05G2187_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga05G2187; organism=Gossypium arboreum; type=mRNA; length=2096bp; location=Sequence derived from: Chr05_CRI-A2_v1.0.a1:20273726..20275821+ (Gossypium arboreumback to top Coding sequence (CDS) from alignment at Chr05_CRI-A2_v1.0.a1:20273726..20275821+ >evm.model.Ga05G2187_CRI-A2_v1.0.a1 ID=evm.model.Ga05G2187_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga05G2187; organism=Gossypium arboreum; type=CDS; length=594bp; location=Sequence derived from: Chr05_CRI-A2_v1.0.a1:20273726..20275821+ (Gossypium arboreumback to top |