EVM_prediction_Ga02G0558, evm.model.Ga02G0558_CRI-A2_v1.0.a1 (mRNA) Gossypium arboreum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1347713952|gb|PPS10788.1| (hypothetical protein GOBAR_AA09862 [Gossypium barbadense]) HSP 1 Score: 310.842 bits (795), Expect = 9.781e-103 Identity = 208/309 (67.31%), Postives = 217/309 (70.23%), Query Frame = 0
Query: 20 MLSNISAKSASSRSTPKPTLAAAAPFPSARPLKHLKKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEARKGYQEEENILCEAAEQDYEKEKLNKRIVKLSGGVAVIQGVCWNSQLGIQRL------STETGAVSIYCGFW-------ESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG 304
MLSNIS KSASSRSTPKP LAAAAPFPSARPLKHLKKRLAAVFEQQ+AERICKEIEEQEFEEAQ FLQE EKHLKRGK KPILDG MSEQLKERQEQ KRL Q+LEVELSRQHHDGDLK+KNRLARMLENYSGLEA KGYQEEENILCEAAEQDYEKEKLNKRI K SGGVAVIQ V + I + + + + F+ ESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG
Sbjct: 1 MLSNISTKSASSRSTPKPALAAAAPFPSARPLKHLKKRLAAVFEQQRAERICKEIEEQEFEEAQAFLQETEKHLKRGKMKPILDGEKLTKQTLLEQAMSEQLKERQEQEKRL----------------------------------------QKLEVELSRQHHDGDLKKKNRLARMLENYSGLEAGKGYQEEENILCEAAEQDYEKEKLNKRIAKFSGGVAVIQ-VGAQTDFMILHVEFYDFWDMKDAILEVKNNFYITLNNRRESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG 268
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1029023880|ref|XP_016675772.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Gossypium hirsutum]) HSP 1 Score: 189.119 bits (479), Expect = 2.940e-57 Identity = 96/104 (92.31%), Postives = 96/104 (92.31%), Query Frame = 0
Query: 105 TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEARKGYQEEENILCEA 208
MSEQLKERQEQ KRLQ VAKTMNHMERAKREEA PLIEA FQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLA MLENYSGLEA KGYQEEENILCE
Sbjct: 2 AMSEQLKERQEQEKRLQKVAKTMNHMERAKREEAAPLIEATFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLAHMLENYSGLEAGKGYQEEENILCEV 105
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1028941155|ref|XP_016713784.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit A-like isoform X3 [Gossypium hirsutum]) HSP 1 Score: 208.379 bits (529), Expect = 4.012e-57 Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDGTMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSR HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRHRHDGDLKEKNRLARMLEN 738
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1050552611|ref|XP_017620881.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Gossypium arboreum]) HSP 1 Score: 202.601 bits (514), Expect = 1.079e-56 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 233 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 377
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|763759027|gb|KJB26358.1| (hypothetical protein B456_004G238100 [Gossypium raimondii]) HSP 1 Score: 205.297 bits (521), Expect = 4.673e-56 Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGRALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 739
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|823153399|ref|XP_012476540.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit A-like isoform X2 [Gossypium raimondii] >gi|763759031|gb|KJB26362.1| hypothetical protein B456_004G238100 [Gossypium raimondii]) HSP 1 Score: 203.371 bits (516), Expect = 2.236e-55 Identity = 116/140 (82.86%), Postives = 124/140 (88.57%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 744
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|763778192|gb|KJB45315.1| (hypothetical protein B456_007G300600 [Gossypium raimondii]) HSP 1 Score: 201.445 bits (511), Expect = 4.008e-55 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 436 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 580
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1204901255|ref|XP_021282772.1| (eukaryotic translation initiation factor 3 subunit A-like [Herrania umbratica]) HSP 1 Score: 202.601 bits (514), Expect = 4.118e-55 Identity = 115/145 (79.31%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG M+EQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEA FQRRL+EEKVLHEREQQLEVELSRQHHDGDL+EKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLLERAMNEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAGFQRRLVEEKVLHEREQQLEVELSRQHHDGDLREKNRLARMLEN 749
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|763759032|gb|KJB26363.1| (hypothetical protein B456_004G238100 [Gossypium raimondii]) HSP 1 Score: 201.83 bits (512), Expect = 7.023e-55 Identity = 116/144 (80.56%), Postives = 124/144 (86.11%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 748
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Match: gi|1050607128|ref|XP_017626132.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Gossypium arboreum]) HSP 1 Score: 201.445 bits (511), Expect = 7.884e-55 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 556 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 700
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT4G11420.1 (| Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987) HSP 1 Score: 132.109 bits (331), Expect = 3.449e-34 Identity = 86/145 (59.31%), Postives = 113/145 (77.93%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
+KRLAA +++ +RI +EIEE+E EEAQ L+E EK +K+GK+KP+LDG ++EQLKERQE K+LQ +AKTM+++ERAKREEA PLIEAA+QRRL+EE+ +EREQQ EVELS++ H+ DLKEKNRL+RML N
Sbjct: 605 QKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGN 749
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT5G56500.2 (| Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:22874058-22876966 FORWARD LENGTH=597) HSP 1 Score: 53.9138 bits (128), Expect = 5.235e-8 Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L EAAEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 402 LIEAAEQDYEKEKLNERIAKLSGGVAVIQ 430
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT5G56500.1 (| Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:22874058-22876966 FORWARD LENGTH=597) HSP 1 Score: 53.9138 bits (128), Expect = 5.235e-8 Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L EAAEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 402 LIEAAEQDYEKEKLNERIAKLSGGVAVIQ 430
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT1G55490.2 (| Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715717-20718673 REVERSE LENGTH=600) HSP 1 Score: 51.2174 bits (121), Expect = 4.580e-7 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L E AEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 406 LIEQAEQDYEKEKLNERIAKLSGGVAVIQ 434
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT1G55490.1 (| Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715717-20718673 REVERSE LENGTH=600) HSP 1 Score: 51.2174 bits (121), Expect = 4.580e-7 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L E AEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 406 LIEQAEQDYEKEKLNERIAKLSGGVAVIQ 434
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Match: AT3G13470.1 (| Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596) HSP 1 Score: 50.8322 bits (120), Expect = 5.085e-7 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L E AEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 402 LIEQAEQDYEKEKLNERIAKLSGGVAVIQ 430
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_TOBAC (Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum OX=4097 GN=TIF3A1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.947e-40 Identity = 86/145 (59.31%), Postives = 109/145 (75.17%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
+KR+AA +EQ++ +RI KEIE++E EEAQ L E EK KR K+KP+L+G ++EQL+ERQE K+L AK+M+H+ERAKREEA PLIE+AF++RL EE LHEREQQ E+ELSRQ H GDL+EK RLARMLEN
Sbjct: 605 QKRIAAEYEQRRNQRILKEIEDRELEEAQALLHEAEKRSKR-KKKPVLEGEKMTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHLERAKREEAAPLIESAFKQRLAEEAALHEREQQQEIELSRQRHAGDLEEKRRLARMLEN 748
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_ARATH (Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana OX=3702 GN=TIF3A1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.781e-33 Identity = 86/145 (59.31%), Postives = 113/145 (77.93%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
+KRLAA +++ +RI +EIEE+E EEAQ L+E EK +K+GK+KP+LDG ++EQLKERQE K+LQ +AKTM+++ERAKREEA PLIEAA+QRRL+EE+ +EREQQ EVELS++ H+ DLKEKNRL+RML N
Sbjct: 605 QKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGN 749
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_MAIZE (Eukaryotic translation initiation factor 3 subunit A OS=Zea mays OX=4577 GN=TIF3A1 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.706e-30 Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = 0
Query: 64 QQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDGTMS----------EQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEAR 195
Q++ +RI +EIEE+ EA+ L+++ K GK+ +++G ++ EQLKER E K+LQ AKTM+++ERAKR+E PLIE AFQ+RL EEK+LHE+EQ E+ELS+QHH DL+EKNRL+RMLE+ + L+ R
Sbjct: 612 QREQDRIRREIEEKNKAEAKKMLEDLNKA---GKKHVVVEGELTKEAYMELARNEQLKERHEMEKKLQKFAKTMDYLERAKRQEEAPLIEQAFQKRLEEEKILHEQEQLREIELSKQHHASDLQEKNRLSRMLEHKNALQER 750
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_CRYNJ (Eukaryotic translation initiation factor 3 subunit A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=TIF32 PE=3 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.665e-7 Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 0
Query: 108 EQL-KERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEAR--KGYQEEENILCEAAEQDYEKEKLNKR 221
EQL KE++E +RL+ V K ++H+ERA R+E PL+ ++R+ E++ H+R Q+ E + + + K RL RMLE+Y ++ R QEE E A + E+EK R
Sbjct: 640 EQLAKEKKELSERLRIVGKRVDHLERAMRKEERPLLAQDYERQKAEDRAAHDRANQIAREQAIEQQRAARELKQRLGRMLEDYEAVKERIESQMQEELKAAKEEARRKIEEEKAQLR 756
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_CRYNB (Eukaryotic translation initiation factor 3 subunit A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=TIF32 PE=3 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.665e-7 Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 0
Query: 108 EQL-KERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEAR--KGYQEEENILCEAAEQDYEKEKLNKR 221
EQL KE++E +RL+ V K ++H+ERA R+E PL+ ++R+ E++ H+R Q+ E + + + K RL RMLE+Y ++ R QEE E A + E+EK R
Sbjct: 640 EQLAKEKKELSERLRIVGKRVDHLERAMRKEERPLLAQDYERQKAEDRAAHDRANQIAREQAIEQQRAARELKQRLGRMLEDYEAVKERIESQMQEELKAAKEEARRKIEEEKAQLR 756
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: EIF3A_USTMA (Eukaryotic translation initiation factor 3 subunit A OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF32 PE=3 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 5.092e-7 Identity = 41/147 (27.89%), Postives = 79/147 (53.74%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEI---------EKHLKRGKRKPILDGTMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGL 192
+KR+A ++++ +R+ KE+E EEA+ + + E+ L ++ + + KE++E +RL+ + + M+H+ERA R E PL+ A ++R+ E+ H+ + ++ S+ H DL+ K RL R+L +Y L
Sbjct: 624 QKRIAEEQKKREQDRLNKEVEAVRIEEAKKMAKSLQERGGLKLSEEELANLDTDKLVQMQVEQIEKEKKELAERLRLIHRRMDHLERAYRREEAPLLSADYERQKQEDLQYHKAARITLLQTSKDKHAADLEIKKRLTRILPDYQQL 770
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Match: CPNB3_ARATH (Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B3 PE=1 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 7.256e-7 Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0
Query: 205 LCEAAEQDYEKEKLNKRIVKLSGGVAVIQ 233
L EAAEQDYEKEKLN+RI KLSGGVAVIQ
Sbjct: 402 LIEAAEQDYEKEKLNERIAKLSGGVAVIQ 430
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A2P5Y5B9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA09862 PE=4 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 8.216e-103 Identity = 208/309 (67.31%), Postives = 217/309 (70.23%), Query Frame = 0
Query: 20 MLSNISAKSASSRSTPKPTLAAAAPFPSARPLKHLKKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEARKGYQEEENILCEAAEQDYEKEKLNKRIVKLSGGVAVIQGVCWNSQLGIQRL------STETGAVSIYCGFW-------ESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG 304
MLSNIS KSASSRSTPKP LAAAAPFPSARPLKHLKKRLAAVFEQQ+AERICKEIEEQEFEEAQ FLQE EKHLKRGK KPILDG MSEQLKERQEQ KRL Q+LEVELSRQHHDGDLK+KNRLARMLENYSGLEA KGYQEEENILCEAAEQDYEKEKLNKRI K SGGVAVIQ V + I + + + + F+ ESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG
Sbjct: 1 MLSNISTKSASSRSTPKPALAAAAPFPSARPLKHLKKRLAAVFEQQRAERICKEIEEQEFEEAQAFLQETEKHLKRGKMKPILDGEKLTKQTLLEQAMSEQLKERQEQEKRL----------------------------------------QKLEVELSRQHHDGDLKKKNRLARMLENYSGLEAGKGYQEEENILCEAAEQDYEKEKLNKRIAKFSGGVAVIQ-VGAQTDFMILHVEFYDFWDMKDAILEVKNNFYITLNNRRESYALAFSNVLASKRKLQGNKQFKIWRKWREEEKNLNNCYWQKG 268
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A1U8ICE7_GOSHI (eukaryotic translation initiation factor 3 subunit A-like OS=Gossypium hirsutum OX=3635 GN=LOC107895072 PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.470e-57 Identity = 96/104 (92.31%), Postives = 96/104 (92.31%), Query Frame = 0
Query: 105 TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLENYSGLEARKGYQEEENILCEA 208
MSEQLKERQEQ KRLQ VAKTMNHMERAKREEA PLIEA FQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLA MLENYSGLEA KGYQEEENILCE
Sbjct: 2 AMSEQLKERQEQEKRLQKVAKTMNHMERAKREEAAPLIEATFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLAHMLENYSGLEAGKGYQEEENILCEV 105
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A1U8LKT2_GOSHI (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium hirsutum OX=3635 GN=LOC107927259 PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.370e-57 Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDGTMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSR HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRHRHDGDLKEKNRLARMLEN 738
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2PHE6_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_004G238100 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.926e-56 Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGRALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 739
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2N2W4_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_004G238100 PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.878e-55 Identity = 116/140 (82.86%), Postives = 124/140 (88.57%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 744
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2TP22_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_007G300600 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.367e-55 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 436 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 580
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2PHF3_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_004G238100 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 5.899e-55 Identity = 116/144 (80.56%), Postives = 124/144 (86.11%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 748
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A1U8LK06_GOSHI (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium hirsutum OX=3635 GN=LOC107927259 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 7.552e-55 Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSR HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRHRHDGDLKEKNRLARMLEN 744
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2S516_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_004G238100 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 8.105e-55 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 605 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 749
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Match: A0A0D2R342_GOSRA (Eukaryotic translation initiation factor 3 subunit A OS=Gossypium raimondii OX=29730 GN=B456_004G238100 PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.081e-54 Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 0
Query: 55 KKRLAAVFEQQQAERICKEIEEQEFEEAQTFLQEIEKHLKRGKRKPILDG-----------TMSEQLKERQEQGKRLQNVAKTMNHMERAKREEATPLIEAAFQRRLLEEKVLHEREQQLEVELSRQHHDGDLKEKNRLARMLEN 188
KKRLAA+FEQQ+AERI KEIEE+E EEAQ LQE EKHLKRGK+KPILDG +SEQLKERQEQ KRLQ VAKTM+H+ERAKREEA PLIEAAFQRRL+EEKVLHEREQQLEVELSRQ HDGDLKEKNRLARMLEN
Sbjct: 595 KKRLAAMFEQQRAERIRKEIEERELEEAQALLQETEKHLKRGKKKPILDGEKLTKQTLIERALSEQLKERQEQEKRLQKVAKTMDHLERAKREEAAPLIEAAFQRRLVEEKVLHEREQQLEVELSRQRHDGDLKEKNRLARMLEN 739 The following BLAST results are available for this feature:
BLAST of EVM_prediction_Ga02G0558 vs. NCBI nr
Analysis Date: 2019-03-07 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs NCBI nr) Total hits: 10
BLAST of EVM_prediction_Ga02G0558 vs. TAIR10
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs arabidopsis TAIR10) Total hits: 6
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy Swiss-Prot
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt Swissprot) Total hits: 7
BLAST of EVM_prediction_Ga02G0558 vs. ExPASy TrEMBL
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for CRI v1.0 Gossypium arboreum proteins
Date Performed: 2019-03-06
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.Ga02G0558_CRI-A2_v1.0.a1 ID=evm.model.Ga02G0558_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga02G0558; organism=Gossypium arboreum; type=mRNA; length=927bpback to top protein sequence of evm.model.Ga02G0558_CRI-A2_v1.0.a1 >evm.model.Ga02G0558_CRI-A2_v1.0.a1 ID=evm.model.Ga02G0558_CRI-A2_v1.0.a1; Name=evm.model.Ga02G0558_CRI-A2_v1.0.a1; organism=Gossypium arboreum; type=polypeptide; length=308bpback to top mRNA from alignment at Chr02_CRI-A2_v1.0.a1:13382198..13386758- Legend: polypeptideexonCDSgenetic_marker Hold the cursor over a type above to highlight its positions in the sequence below.>evm.model.Ga02G0558_CRI-A2_v1.0.a1 ID=evm.model.Ga02G0558_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga02G0558; organism=Gossypium arboreum; type=mRNA; length=4561bp; location=Sequence derived from: Chr02_CRI-A2_v1.0.a1:13382198..13386758- (Gossypium arboreumback to top Coding sequence (CDS) from alignment at Chr02_CRI-A2_v1.0.a1:13382198..13386758- >evm.model.Ga02G0558_CRI-A2_v1.0.a1 ID=evm.model.Ga02G0558_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga02G0558; organism=Gossypium arboreum; type=CDS; length=927bp; location=Sequence derived from: Chr02_CRI-A2_v1.0.a1:13382198..13386758- (Gossypium arboreumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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