CotAD_07989, CotAD_07989_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameCotAD_07989
Unique NameCotAD_07989_BGI-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length354
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold104.1supercontigscaffold104.1:1854536..1854889 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abhbL0968Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhbL0969Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
bhhbL4445Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL5009Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL5010Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
hbhbL1939Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR2533Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnR5101Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR5102Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR5107Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR5112Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR5114Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR5126Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbrjR2563Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hbrjR2569Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hbrbR2983Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hbrbR2988Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hbhjR5224Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5226Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5231Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5236Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5237Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5240Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5250Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR5251Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Cotton_A_16541Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Cotton_D_gene_10021272Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Cotton_D_gene_10015688Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Cotton_A_10563Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Gorai.011G199400.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gh_D09G2271Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.D10G178400.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gh_A10G1525Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.A09G065500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gh_D10G1776Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.D09G064400.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gohir.A10G171300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CotAD_07989_BGI-AD1_v1.0-CDS-scaffold104.1_BGI-AD1_v1.0-1448072452:1854536..1854889CotAD_07989_BGI-AD1_v1.0-CDS-scaffold104.1_BGI-AD1_v1.0-1448072452:1854536..1854889Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CotAD_07989CotAD_07989_BGI-AD1_v1.0-proteinGossypium hirsutumpolypeptide
CotAD_07989_BGI-AD1_v1.0CotAD_07989_BGI-AD1_v1.0Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A1U8LI16_GOSHI (pre-mRNA-splicing factor CWC22 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107926479 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.411e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI 117
            MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI
Sbjct:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI 117
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A1U8KE98_GOSHI (zinc finger CCHC domain-containing protein 10-like OS=Gossypium hirsutum OX=3635 GN=LOC107916203 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.707e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDENRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A0D2VPC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G199400 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.066e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDENRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A1U8IND7_GOSHI (zinc finger CCHC domain-containing protein 10-like OS=Gossypium hirsutum OX=3635 GN=LOC107896623 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.184e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDDNRSKKSKRKYRSDSGSGSDSEASVFETDSGASFVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A0B0MPC6_GOSAR (Zinc finger CCHC domain-containing 10 OS=Gossypium arboreum OX=29729 GN=F383_00661 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.272e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDDNRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A067DPG4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g024910mg PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.719e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MK+SISY+LDN DVKD+    RSKKSKRKHR D  S SDSEASVF TD+G+SS
Sbjct:  133 MKVSISYDLDNPDVKDKKAEERSKKSKRKHRSDLDSGSDSEASVFETDSGSSS 185
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: V4U8M9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016311mg PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.719e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MK+SISY+LDN DVKD+    RSKKSKRKHR D  S SDSEASVF TD+G+SS
Sbjct:  133 MKVSISYDLDNPDVKDKKAEERSKKSKRKHRSDLDSGSDSEASVFETDSGSSS 185
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A2H5Q1C8_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_186610 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.517e-12
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MK+SISY+LDN DVKD+    RSKKSKRKH  D  S SDSEASVF TD+G+SS
Sbjct:  182 MKVSISYDLDNPDVKDKKAEERSKKSKRKHHSDLDSGSDSEASVFETDSGSSS 234
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A061EQS1_THECC (Zinc knuckle family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021337 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.323e-11
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGA 51
            MKLSISY+LDN D+KD  + NRSKKSKRKHR DS S SDSEASVF TD+GA
Sbjct:  130 MKLSISYDLDNPDIKDEKEDNRSKKSKRKHRSDSDSGSDSEASVFETDSGA 180
[Close]
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Match: A0A2R6PW81_ACTCH (Zinc finger CCHC domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24557 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.413e-11
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDV-KDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MKLSISY+LDN D+ K+  D   SKKSKRKHR D+ S SDSEASVF +D+GASS
Sbjct:  135 MKLSISYDLDNPDIPKELKDEKVSKKSKRKHRSDTESGSDSEASVFESDSGASS 188
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1028939235|ref|XP_016712814.1| (PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium hirsutum])

HSP 1 Score: 228.024 bits (580), Expect = 1.679e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI 117
            MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI
Sbjct:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLIRIPLIGANGGRVEGIDI 117
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1269874599|ref|XP_022741702.1| (zinc finger CCHC domain-containing protein 10-like [Durio zibethinus])

HSP 1 Score: 81.6481 bits (200), Expect = 2.526e-16
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASSDSSSAESSTDYNSS 67
            MKLSISY+LDN DVKD  D +RSKKSKRKHR DSGS S+SEASVF TD+GASS + S     DY+S+
Sbjct:  130 MKLSISYDLDNPDVKDEKDDSRSKKSKRKHRSDSGSGSNSEASVFETDSGASSVTGS-----DYSSA 191
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1029081334|ref|XP_016700846.1| (PREDICTED: zinc finger CCHC domain-containing protein 10-like [Gossypium hirsutum])

HSP 1 Score: 73.1738 bits (178), Expect = 3.223e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDENRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|823247244|ref|XP_012456296.1| (PREDICTED: zinc finger CCHC domain-containing protein 10-like [Gossypium raimondii] >gi|763805882|gb|KJB72820.1| hypothetical protein B456_011G199400 [Gossypium raimondii])

HSP 1 Score: 73.1738 bits (178), Expect = 3.650e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDENRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1029026938|ref|XP_016677314.1| (PREDICTED: zinc finger CCHC domain-containing protein 10-like [Gossypium hirsutum])

HSP 1 Score: 72.7886 bits (177), Expect = 4.981e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDDNRSKKSKRKYRSDSGSGSDSEASVFETDSGASFVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1050650803|ref|XP_017648786.1| (PREDICTED: zinc finger CCHC domain-containing protein 10-like [Gossypium arboreum] >gi|728820874|gb|KHG03978.1| Zinc finger CCHC domain-containing 10 [Gossypium arboreum])

HSP 1 Score: 72.7886 bits (177), Expect = 5.085e-13
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGAS----SDSSSAESSTDY 64
            MKLSISY+LD  DVKD+ D NRSKKSKRK+R DSGS SDSEASVF TD+GAS    SD SS  SSTDY
Sbjct:  130 MKLSISYDLDIPDVKDKKDDNRSKKSKRKYRSDSGSGSDSEASVFETDSGASSVTGSDYSSEGSSTDY 197
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|567909863|ref|XP_006447245.1| (zinc finger CCHC domain-containing protein 10 [Citrus clementina] >gi|567909865|ref|XP_006447246.1| zinc finger CCHC domain-containing protein 10 [Citrus clementina] >gi|568831280|ref|XP_006469899.1| PREDICTED: zinc finger CCHC domain-containing protein 10 [Citrus sinensis] >gi|568831282|ref|XP_006469900.1| PREDICTED: zinc finger CCHC domain-containing protein 10 [Citrus sinensis] >gi|557549856|gb|ESR60485.1| hypothetical protein CICLE_v10016311mg [Citrus clementina] >gi|557549857|gb|ESR60486.1| hypothetical protein CICLE_v10016311mg [Citrus clementina] >gi|641821164|gb|KDO40916.1| hypothetical protein CISIN_1g024910mg [Citrus sinensis] >gi|641821165|gb|KDO40917.1| hypothetical protein CISIN_1g024910mg [Citrus sinensis])

HSP 1 Score: 72.0182 bits (175), Expect = 9.189e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MK+SISY+LDN DVKD+    RSKKSKRKHR D  S SDSEASVF TD+G+SS
Sbjct:  133 MKVSISYDLDNPDVKDKKAEERSKKSKRKHRSDLDSGSDSEASVFETDSGSSS 185
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1315949355|dbj|GAY58381.1| (hypothetical protein CUMW_186610, partial [Citrus unshiu])

HSP 1 Score: 70.0922 bits (170), Expect = 5.377e-12
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGASS 53
            MK+SISY+LDN DVKD+    RSKKSKRKH  D  S SDSEASVF TD+G+SS
Sbjct:  182 MKVSISYDLDNPDVKDKKAEERSKKSKRKHHSDLDSGSDSEASVFETDSGSSS 234
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|1063489581|ref|XP_007035760.2| (PREDICTED: zinc finger CCHC domain-containing protein 10 [Theobroma cacao])

HSP 1 Score: 67.781 bits (164), Expect = 3.914e-11
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGA 51
            MKLSISY+LDN D+KD  + NRSKKSKRKHR DS S SDSEASVF TD+GA
Sbjct:  130 MKLSISYDLDNPDIKDEKEDNRSKKSKRKHRSDSDSGSDSEASVFETDSGA 180
[Close]
BLAST of CotAD_07989 vs. NCBI nr
Match: gi|508714789|gb|EOY06686.1| (Zinc knuckle family protein isoform 1 [Theobroma cacao] >gi|508714790|gb|EOY06687.1| Zinc knuckle family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 67.781 bits (164), Expect = 3.955e-11
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:    1 MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTGA 51
            MKLSISY+LDN D+KD  + NRSKKSKRKHR DS S SDSEASVF TD+GA
Sbjct:  130 MKLSISYDLDNPDIKDEKEDNRSKKSKRKHRSDSDSGSDSEASVFETDSGA 180
The following BLAST results are available for this feature:
BLAST of CotAD_07989 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8LI16_GOSHI1.411e-75100.00pre-mRNA-splicing factor CWC22 homolog OS=Gossypiu... [more]
A0A1U8KE98_GOSHI2.707e-1373.53zinc finger CCHC domain-containing protein 10-like... [more]
A0A0D2VPC9_GOSRA3.066e-1373.53Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8IND7_GOSHI4.184e-1373.53zinc finger CCHC domain-containing protein 10-like... [more]
A0A0B0MPC6_GOSAR4.272e-1373.53Zinc finger CCHC domain-containing 10 OS=Gossypium... [more]
A0A067DPG4_CITSI7.719e-1371.70Uncharacterized protein OS=Citrus sinensis OX=2711... [more]
V4U8M9_9ROSI7.719e-1371.70Uncharacterized protein OS=Citrus clementina OX=85... [more]
A0A2H5Q1C8_CITUN4.517e-1269.81Uncharacterized protein (Fragment) OS=Citrus unshi... [more]
A0A061EQS1_THECC3.323e-1176.47Zinc knuckle family protein isoform 1 OS=Theobroma... [more]
A0A2R6PW81_ACTCH6.413e-1168.52Zinc finger CCHC domain-containing protein OS=Acti... [more]
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BLAST of CotAD_07989 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CotAD_07989 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CotAD_07989 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1028939235|ref|XP_016712814.1|1.679e-75100.00PREDICTED: pre-mRNA-splicing factor CWC22 homolog ... [more]
gi|1269874599|ref|XP_022741702.1|2.526e-1668.66zinc finger CCHC domain-containing protein 10-like... [more]
gi|1029081334|ref|XP_016700846.1|3.223e-1373.53PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|823247244|ref|XP_012456296.1|3.650e-1373.53PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|1029026938|ref|XP_016677314.1|4.981e-1373.53PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|1050650803|ref|XP_017648786.1|5.085e-1373.53PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|567909863|ref|XP_006447245.1|9.189e-1371.70zinc finger CCHC domain-containing protein 10 [Cit... [more]
gi|1315949355|dbj|GAY58381.1|5.377e-1269.81hypothetical protein CUMW_186610, partial [Citrus ... [more]
gi|1063489581|ref|XP_007035760.2|3.914e-1176.47PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|508714789|gb|EOY06686.1|3.955e-1176.47Zinc knuckle family protein isoform 1 [Theobroma c... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>CotAD_07989_BGI-AD1_v1.0 ID=CotAD_07989_BGI-AD1_v1.0; Name=CotAD_07989; organism=Gossypium hirsutum; type=mRNA; length=354bp
ATGAAACTTTCAATCTCGTATAATTTGGATAACCTGGATGTTAAGGATAG
GAATGACGGTAATAGGTCTAAGAAAAGCAAGAGGAAGCATCGGCGAGATT
CTGGGTCCGATTCTGATAGTGAGGCTTCAGTTTTCAGGACTGATACTGGT
GCCTCATCAGATTCTTCTTCAGCCGAGAGTAGTACGGATTACAATTCATC
ATCATCCAAGTCCGAGGAAGAGAGAAGGCAAGAGAGGAGGAAGAAGCAGA
GGGGGAGGCATAATAGAAGGTATATAGCTCATCTTGGAAGCCTTCTGATT
CGGATTCCATTGATAGGAGCAAACGGAGGAAGAGTTGAAGGCATTGACAT
CTAG
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protein sequence of CotAD_07989_BGI-AD1_v1.0

>CotAD_07989_BGI-AD1_v1.0 ID=CotAD_07989_BGI-AD1_v1.0; Name=CotAD_07989_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=117bp
MKLSISYNLDNLDVKDRNDGNRSKKSKRKHRRDSGSDSDSEASVFRTDTG
ASSDSSSAESSTDYNSSSSKSEEERRQERRKKQRGRHNRRYIAHLGSLLI
RIPLIGANGGRVEGIDI
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mRNA from alignment at scaffold104.1:1854536..1854889+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_07989_BGI-AD1_v1.0 ID=CotAD_07989_BGI-AD1_v1.0; Name=CotAD_07989; organism=Gossypium hirsutum; type=mRNA; length=354bp; location=Sequence derived from: scaffold104.1:1854536..1854889+ (Gossypium hirsutum
ATGAAACTTTCAATCTCGTATAATTTGGATAACCTGGATGTTAAGGATAG
GAATGACGGTAATAGGTCTAAGAAAAGCAAGAGGAAGCATCGGCGAGATT
CTGGGTCCGATTCTGATAGTGAGGCTTCAGTTTTCAGGACTGATACTGGT
GCCTCATCAGATTCTTCTTCAGCCGAGAGTAGTACGGATTACAATTCATC
ATCATCCAAGTCCGAGGAAGAGAGAAGGCAAGAGAGGAGGAAGAAGCAGA
GGGGGAGGCATAATAGAAGGTATATAGCTCATCTTGGAAGCCTTCTGATT
CGGATTCCATTGATAGGAGCAAACGGAGGAAGAGTTGAAGGCATTGACAT
CTAG
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Coding sequence (CDS) from alignment at scaffold104.1:1854536..1854889+

>CotAD_07989_BGI-AD1_v1.0 ID=CotAD_07989_BGI-AD1_v1.0; Name=CotAD_07989; organism=Gossypium hirsutum; type=CDS; length=354bp; location=Sequence derived from: scaffold104.1:1854536..1854889+ (Gossypium hirsutum
ATGAAACTTTCAATCTCGTATAATTTGGATAACCTGGATGTTAAGGATAG
GAATGACGGTAATAGGTCTAAGAAAAGCAAGAGGAAGCATCGGCGAGATT
CTGGGTCCGATTCTGATAGTGAGGCTTCAGTTTTCAGGACTGATACTGGT
GCCTCATCAGATTCTTCTTCAGCCGAGAGTAGTACGGATTACAATTCATC
ATCATCCAAGTCCGAGGAAGAGAGAAGGCAAGAGAGGAGGAAGAAGCAGA
GGGGGAGGCATAATAGAAGGTATATAGCTCATCTTGGAAGCCTTCTGATT
CGGATTCCATTGATAGGAGCAAACGGAGGAAGAGTTGAAGGCATTGACAT
CTAG
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