CotAD_23121, CotAD_23121_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameCotAD_23121
Unique NameCotAD_23121_BGI-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length336
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt_chr12chromosomeDt_chr12:27781768..27782103 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
hbhbL0163Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR1417Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnR2031Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2071Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2128Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2156Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbrbR1208Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hbrbR1230Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hbhzR1418Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1459Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1483Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1490Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1522Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1544Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzhbL0446Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL1183Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL1782Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL3087Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL3450Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL4374Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL5555Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hbtoR1232Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR1255Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR1285Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR1305Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbhwR0965Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0986Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR1030Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbtwR1434Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR1479Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR1502Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR1510Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR1544Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR1566Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbndmR1459Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR1505Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR1529Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR1567Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR1588Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbjmbR1431Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR1475Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR1497Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR1535Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR1553Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Cotton_D_gene_10028142Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CotAD_23121_BGI-AD1_v1.0-CDS-Dt_chr12_BGI-AD1_v1.0-1448072452:27781768..27782103CotAD_23121_BGI-AD1_v1.0-CDS-Dt_chr12_BGI-AD1_v1.0-1448072452:27781768..27782103Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CotAD_23121CotAD_23121_BGI-AD1_v1.0-proteinGossypium hirsutumpolypeptide
CotAD_23121_BGI-AD1_v1.0CotAD_23121_BGI-AD1_v1.0Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344110377|gb|PPD83959.1| (hypothetical protein GOBAR_DD19112 [Gossypium barbadense])

HSP 1 Score: 167.548 bits (423), Expect = 1.354e-50
Identity = 87/111 (78.38%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVD+ESTIGGIGID+NITPDIDVVG +    SDHCD+EV+SD DPD DDVP+DIDDE VNNDGN NASSVGNQMR ILIHNNPGPHM LI+ DA +VA+FPEYP+
Sbjct:   56 MVAPISYVDNESTIGGIGIDLNITPDIDVVGDDGFDSSDHCDQEVNSDSDPDADDVPNDIDDEDVNNDGNINASSVGNQMRCILIHNNPGPHMSLINPDATHVAKFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1347708161|gb|PPS06336.1| (hypothetical protein GOBAR_AA14313 [Gossypium barbadense])

HSP 1 Score: 162.925 bits (411), Expect = 1.590e-48
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSESTI GI ID+N+TPDIDVVG +    SD C++EV SD DPDV DVP+DIDDE VNNDGN NASS+GNQMR I+IHNNPG HMLLI+ DAA+VAEFPEYPK
Sbjct:    1 MVAPISYVDSESTIRGINIDLNVTPDIDVVGDDGYNSSDPCNQEVDSDSDPDVADVPNDIDDEDVNNDGNINASSIGNQMRCIVIHNNPGTHMLLINPDAAHVAEFPEYPK 111
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344127841|gb|PPE00269.1| (hypothetical protein GOBAR_DD02706 [Gossypium barbadense])

HSP 1 Score: 166.392 bits (420), Expect = 4.768e-46
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEY 109
            MV+PISYVDSESTIGGI ID+NITPDIDVVGGEEE GSDHC EEV SDGDPD+DDVPDDI+DE VNNDGN NASSVGNQMRRILIHNNPGPHM LID DAA+VAEF EY
Sbjct:    1 MVAPISYVDSESTIGGISIDLNITPDIDVVGGEEEGGSDHCGEEVDSDGDPDMDDVPDDINDEDVNNDGNINASSVGNQMRRILIHNNPGPHMSLIDPDAAHVAEFLEY 109
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344113305|gb|PPD86644.1| (hypothetical protein GOBAR_DD16428 [Gossypium barbadense])

HSP 1 Score: 156.762 bits (395), Expect = 6.417e-46
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSEST+GGIGID+NITPDIDVVGGEEE  SDH DEEV SDGDP++DDVPDDIDDE VNNDGN +ASSVG QMR ILIHNNPGPHM LID DAAYV EFP+YP+
Sbjct:   73 MVAPISYVDSESTMGGIGIDLNITPDIDVVGGEEEGDSDHWDEEVDSDGDPELDDVPDDIDDEDVNNDGNIDASSVGEQMRCILIHNNPGPHMSLIDPDAAYVVEFPKYPE 183
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344130487|gb|PPE02808.1| (hypothetical protein GOBAR_DD00177 [Gossypium barbadense])

HSP 1 Score: 158.303 bits (399), Expect = 5.857e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSEST+GGIGID+NITPDIDVVGGEEE GSDH DEEV SD DPDV+DVPDDID + VNNDGN + SSVG+QMRRILIHNN GPHM LID DAAYVAEFPEYP+
Sbjct:   56 MVAPISYVDSESTMGGIGIDLNITPDIDVVGGEEEGGSDHWDEEVDSDSDPDVEDVPDDIDTKDVNNDGNIDTSSVGDQMRRILIHNNLGPHMSLIDPDAAYVAEFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344093405|gb|PPD69049.1| (hypothetical protein GOBAR_DD34073 [Gossypium barbadense])

HSP 1 Score: 150.599 bits (379), Expect = 3.980e-43
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+P SYVDSEST+GGIGID+NITPDIDVVG EEE GSDH DEEV SDGDPDV+DVPDDID E VNN+GN +ASSVG+QMRRIL+HNN  PHM LID D AYVAEFPEYP+
Sbjct:  116 MVAPKSYVDSESTMGGIGIDLNITPDIDVVGVEEEGGSDHWDEEVDSDGDPDVNDVPDDIDAEDVNNNGNIDASSVGDQMRRILVHNNSRPHMSLIDPDVAYVAEFPEYPE 226
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344114623|gb|PPD87870.1| (hypothetical protein GOBAR_DD15184 [Gossypium barbadense])

HSP 1 Score: 144.05 bits (362), Expect = 1.836e-41
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSESTIGGIGID+NIT DIDVVGGEEE GSDH DEEV SD D DVDDVPDDIDDE VNNDGN NASS+GNQMRRIL++NN GPHM LID DAAYVAEFPEYP+
Sbjct:   56 MVAPISYVDSESTIGGIGIDLNITLDIDVVGGEEEGGSDHYDEEVDSDSDLDVDDVPDDIDDEDVNNDGNINASSIGNQMRRILLYNNLGPHMSLIDPDAAYVAEFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1347693657|gb|PPR94145.1| (hypothetical protein GOBAR_AA26532 [Gossypium barbadense])

HSP 1 Score: 142.51 bits (358), Expect = 5.476e-41
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDS+STI GI ID+N+TPDIDVVG +    SD CD+EV+SD D DV+++PDDID E VN+DGN +ASSV NQ++RI+IHNNP PHM LI  DA  +AEFP+YP+
Sbjct:   42 MVAPISYVDSKSTIRGINIDLNVTPDIDVVGDDGYDSSDPCDQEVYSDSDSDVEEIPDDIDKEDVNDDGNISASSVENQIQRIVIHNNPRPHMSLISPDAVRIAEFPKYPE 152
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344112218|gb|PPD85646.1| (hypothetical protein GOBAR_DD17416 [Gossypium barbadense])

HSP 1 Score: 141.354 bits (355), Expect = 9.871e-41
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYV+SESTI  IGID+NITPDIDVVG +   GSDHCD+EV SD DPDVDDVPD+IDDE VNNDGN NASSVGNQMRRI+IHNN GPHM LID DAA+VA+FPEYP+
Sbjct:    1 MVAPISYVNSESTIDEIGIDLNITPDIDVVGDDGYDGSDHCDQEVDSDSDPDVDDVPDNIDDEDVNNDGNINASSVGNQMRRIVIHNNSGPHMSLIDPDAAHVAKFPEYPE 111
[Close]
BLAST of CotAD_23121 vs. NCBI nr
Match: gi|1344106599|gb|PPD80506.1| (hypothetical protein GOBAR_DD22566 [Gossypium barbadense])

HSP 1 Score: 144.05 bits (362), Expect = 5.615e-40
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVD+EST+GGIGID+NITPDIDVVGGEEE GSDH DEEV SDGDPD+DDVPDDIDDE VNNDGN NA SVG+QMRRILIHNNP  HM LID DAAYVAEF +YPK
Sbjct:  189 MVAPISYVDNESTMGGIGIDLNITPDIDVVGGEEEGGSDHWDEEVDSDGDPDMDDVPDDIDDEDVNNDGNINAYSVGDQMRRILIHNNPRLHMSLIDPDAAYVAEFLKYPK 299
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5RAW9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19112 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.138e-50
Identity = 87/111 (78.38%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVD+ESTIGGIGID+NITPDIDVVG +    SDHCD+EV+SD DPD DDVP+DIDDE VNNDGN NASSVGNQMR ILIHNNPGPHM LI+ DA +VA+FPEYP+
Sbjct:   56 MVAPISYVDNESTIGGIGIDLNITPDIDVVGDDGFDSSDHCDQEVNSDSDPDADDVPNDIDDEDVNNDGNINASSVGNQMRCILIHNNPGPHMSLINPDATHVAKFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5XSS7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA14313 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.335e-48
Identity = 84/111 (75.68%), Postives = 95/111 (85.59%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSESTI GI ID+N+TPDIDVVG +    SD C++EV SD DPDV DVP+DIDDE VNNDGN NASS+GNQMR I+IHNNPG HMLLI+ DAA+VAEFPEYPK
Sbjct:    1 MVAPISYVDSESTIRGINIDLNVTPDIDVVGDDGYNSSDPCNQEVDSDSDPDVADVPNDIDDEDVNNDGNINASSIGNQMRCIVIHNNPGTHMLLINPDAAHVAEFPEYPK 111
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5SMI0_GOSBA (Defective in cullin neddylation protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02706 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.005e-46
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEY 109
            MV+PISYVDSESTIGGI ID+NITPDIDVVGGEEE GSDHC EEV SDGDPD+DDVPDDI+DE VNNDGN NASSVGNQMRRILIHNNPGPHM LID DAA+VAEF EY
Sbjct:    1 MVAPISYVDSESTIGGISIDLNITPDIDVVGGEEEGGSDHCGEEVDSDGDPDMDDVPDDINDEDVNNDGNINASSVGNQMRRILIHNNPGPHMSLIDPDAAHVAEFLEY 109
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5RIP0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD16428 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.391e-46
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSEST+GGIGID+NITPDIDVVGGEEE  SDH DEEV SDGDP++DDVPDDIDDE VNNDGN +ASSVG QMR ILIHNNPGPHM LID DAAYV EFP+YP+
Sbjct:   73 MVAPISYVDSESTMGGIGIDLNITPDIDVVGGEEEGDSDHWDEEVDSDGDPELDDVPDDIDDEDVNNDGNIDASSVGEQMRCILIHNNPGPHMSLIDPDAAYVVEFPKYPE 183
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5SUR2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00177 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.920e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSEST+GGIGID+NITPDIDVVGGEEE GSDH DEEV SD DPDV+DVPDDID + VNNDGN + SSVG+QMRRILIHNN GPHM LID DAAYVAEFPEYP+
Sbjct:   56 MVAPISYVDSESTMGGIGIDLNITPDIDVVGGEEEGGSDHWDEEVDSDSDPDVEDVPDDIDTKDVNNDGNIDTSSVGDQMRRILIHNNLGPHMSLIDPDAAYVAEFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5Q3C2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD34073 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.343e-43
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+P SYVDSEST+GGIGID+NITPDIDVVG EEE GSDH DEEV SDGDPDV+DVPDDID E VNN+GN +ASSVG+QMRRIL+HNN  PHM LID D AYVAEFPEYP+
Sbjct:  116 MVAPKSYVDSESTMGGIGIDLNITPDIDVVGVEEEGGSDHWDEEVDSDGDPDVNDVPDDIDAEDVNNNGNIDASSVGDQMRRILVHNNSRPHMSLIDPDVAYVAEFPEYPE 226
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5RM61_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD15184 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.543e-41
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDSESTIGGIGID+NIT DIDVVGGEEE GSDH DEEV SD D DVDDVPDDIDDE VNNDGN NASS+GNQMRRIL++NN GPHM LID DAAYVAEFPEYP+
Sbjct:   56 MVAPISYVDSESTIGGIGIDLNITLDIDVVGGEEEGGSDHYDEEVDSDSDLDVDDVPDDIDDEDVNNDGNINASSIGNQMRRILLYNNLGPHMSLIDPDAAYVAEFPEYPE 166
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5WSS4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26532 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.600e-41
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVDS+STI GI ID+N+TPDIDVVG +    SD CD+EV+SD D DV+++PDDID E VN+DGN +ASSV NQ++RI+IHNNP PHM LI  DA  +AEFP+YP+
Sbjct:   42 MVAPISYVDSKSTIRGINIDLNVTPDIDVVGDDGYDSSDPCDQEVYSDSDSDVEEIPDDIDKEDVNDDGNISASSVENQIQRIVIHNNPRPHMSLISPDAVRIAEFPKYPE 152
[Close]
BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5RFU7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD17416 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.292e-41
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYV+SESTI  IGID+NITPDIDVVG +   GSDHCD+EV SD DPDVDDVPD+IDDE VNNDGN NASSVGNQMRRI+IHNN GPHM LID DAA+VA+FPEYP+
Sbjct:    1 MVAPISYVNSESTIDEIGIDLNITPDIDVVGDDGYDGSDHCDQEVDSDSDPDVDDVPDNIDDEDVNNDGNINASSVGNQMRRIVIHNNSGPHMSLIDPDAAHVAKFPEYPE 111
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BLAST of CotAD_23121 vs. ExPASy TrEMBL
Match: A0A2P5R115_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22566 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.717e-40
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0 
Query:    1 MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGDPDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDAAYVAEFPEYPK 111
            MV+PISYVD+EST+GGIGID+NITPDIDVVGGEEE GSDH DEEV SDGDPD+DDVPDDIDDE VNNDGN NA SVG+QMRRILIHNNP  HM LID DAAYVAEF +YPK
Sbjct:  189 MVAPISYVDNESTMGGIGIDLNITPDIDVVGGEEEGGSDHWDEEVDSDGDPDMDDVPDDIDDEDVNNDGNINAYSVGDQMRRILIHNNPRLHMSLIDPDAAYVAEFLKYPK 299
The following BLAST results are available for this feature:
BLAST of CotAD_23121 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1344110377|gb|PPD83959.1|1.354e-5078.38hypothetical protein GOBAR_DD19112 [Gossypium barb... [more]
gi|1347708161|gb|PPS06336.1|1.590e-4875.68hypothetical protein GOBAR_AA14313 [Gossypium barb... [more]
gi|1344127841|gb|PPE00269.1|4.768e-4687.16hypothetical protein GOBAR_DD02706 [Gossypium barb... [more]
gi|1344113305|gb|PPD86644.1|6.417e-4682.88hypothetical protein GOBAR_DD16428 [Gossypium barb... [more]
gi|1344130487|gb|PPE02808.1|5.857e-4582.88hypothetical protein GOBAR_DD00177 [Gossypium barb... [more]
gi|1344093405|gb|PPD69049.1|3.980e-4380.18hypothetical protein GOBAR_DD34073 [Gossypium barb... [more]
gi|1344114623|gb|PPD87870.1|1.836e-4184.68hypothetical protein GOBAR_DD15184 [Gossypium barb... [more]
gi|1347693657|gb|PPR94145.1|5.476e-4165.77hypothetical protein GOBAR_AA26532 [Gossypium barb... [more]
gi|1344112218|gb|PPD85646.1|9.871e-4179.28hypothetical protein GOBAR_DD17416 [Gossypium barb... [more]
gi|1344106599|gb|PPD80506.1|5.615e-4083.78hypothetical protein GOBAR_DD22566 [Gossypium barb... [more]
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BLAST of CotAD_23121 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5RAW9_GOSBA1.138e-5078.38Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5XSS7_GOSBA1.335e-4875.68Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5SMI0_GOSBA4.005e-4687.16Defective in cullin neddylation protein OS=Gossypi... [more]
A0A2P5RIP0_GOSBA5.391e-4682.88Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5SUR2_GOSBA4.920e-4582.88Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5Q3C2_GOSBA3.343e-4380.18Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5RM61_GOSBA1.543e-4184.68Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5WSS4_GOSBA4.600e-4165.77Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5RFU7_GOSBA8.292e-4179.28Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5R115_GOSBA4.717e-4083.78Uncharacterized protein OS=Gossypium barbadense OX... [more]
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BLAST of CotAD_23121 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CotAD_23121 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>CotAD_23121_BGI-AD1_v1.0 ID=CotAD_23121_BGI-AD1_v1.0; Name=CotAD_23121; organism=Gossypium hirsutum; type=mRNA; length=336bp
ATGGTGTCTCCAATATCGTACGTTGATAGTGAATCGACTATAGGTGGGAT
CGGTATCGATATGAATATTACACCCGATATTGATGTGGTTGGTGGTGAAG
AAGAATGTGGTAGTGATCATTGTGATGAAGAGGTCCATAGTGACGGTGAT
CCCGATGTGGACGATGTACCTGATGATATTGACGATGAATATGTGAATAA
CGATGGAAATAATAACGCTTCTTCGGTTGGGAATCAGATGCGACGTATTT
TGATACACAATAATCCTGGGCCACACATGTTGCTCATAGACCTGGACGCA
GCGTATGTAGCTGAGTTCCCGGAGTACCCTAAATAG
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protein sequence of CotAD_23121_BGI-AD1_v1.0

>CotAD_23121_BGI-AD1_v1.0 ID=CotAD_23121_BGI-AD1_v1.0; Name=CotAD_23121_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=111bp
MVSPISYVDSESTIGGIGIDMNITPDIDVVGGEEECGSDHCDEEVHSDGD
PDVDDVPDDIDDEYVNNDGNNNASSVGNQMRRILIHNNPGPHMLLIDLDA
AYVAEFPEYPK
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mRNA from alignment at Dt_chr12:27781768..27782103+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_23121_BGI-AD1_v1.0 ID=CotAD_23121_BGI-AD1_v1.0; Name=CotAD_23121; organism=Gossypium hirsutum; type=mRNA; length=336bp; location=Sequence derived from: Dt_chr12:27781768..27782103+ (Gossypium hirsutum
ATGGTGTCTCCAATATCGTACGTTGATAGTGAATCGACTATAGGTGGGAT
CGGTATCGATATGAATATTACACCCGATATTGATGTGGTTGGTGGTGAAG
AAGAATGTGGTAGTGATCATTGTGATGAAGAGGTCCATAGTGACGGTGAT
CCCGATGTGGACGATGTACCTGATGATATTGACGATGAATATGTGAATAA
CGATGGAAATAATAACGCTTCTTCGGTTGGGAATCAGATGCGACGTATTT
TGATACACAATAATCCTGGGCCACACATGTTGCTCATAGACCTGGACGCA
GCGTATGTAGCTGAGTTCCCGGAGTACCCTAAATAG
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Coding sequence (CDS) from alignment at Dt_chr12:27781768..27782103+

>CotAD_23121_BGI-AD1_v1.0 ID=CotAD_23121_BGI-AD1_v1.0; Name=CotAD_23121; organism=Gossypium hirsutum; type=CDS; length=336bp; location=Sequence derived from: Dt_chr12:27781768..27782103+ (Gossypium hirsutum
ATGGTGTCTCCAATATCGTACGTTGATAGTGAATCGACTATAGGTGGGAT
CGGTATCGATATGAATATTACACCCGATATTGATGTGGTTGGTGGTGAAG
AAGAATGTGGTAGTGATCATTGTGATGAAGAGGTCCATAGTGACGGTGAT
CCCGATGTGGACGATGTACCTGATGATATTGACGATGAATATGTGAATAA
CGATGGAAATAATAACGCTTCTTCGGTTGGGAATCAGATGCGACGTATTT
TGATACACAATAATCCTGGGCCACACATGTTGCTCATAGACCTGGACGCA
GCGTATGTAGCTGAGTTCCCGGAGTACCCTAAATAG
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