Cotton_D_gene_10023869, Cotton_D_gene_10023869 (mRNA) Gossypium raimondii

Transcript Overview
NameCotton_D_gene_10023869
Unique NameCotton_D_gene_10023869-BGI-CGP_v1.0
TypemRNA
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1255
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeChr8:53180199..53181453 -Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
rbrjR0530Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hbrbL2172Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL3334Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
abrbL1110Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
hnrbL0372Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL0772Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL1236Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL1993Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hjrbL0559Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL1138Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL1742Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL2761Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
bhrbL0397Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhrbL2930Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhrbL2960Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbrbL0578Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL2749Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghrbL0544Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL2666Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
acrbL0621Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hzrbL0580Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL1204Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL1821Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL2846Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzrbL0391Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL0572Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL1193Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL1806Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL2835Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gkrbL0198Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gkrbL0974Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gtbrbL0576Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbrbL0869Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
grbrbL0546Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghzrbL0566Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzrbL2743Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghtrbL0576Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL1178Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL1798Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL2825Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adrbL0599Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adrbL0603Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adrbL2820Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hgsrbL0596Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgsrbL2815Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rbtoR0623Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rbtoR0757Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdrbL0596Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdrbL2836Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnrbL0588Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtrbL0637Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
hwrbL0585Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwrbL0910Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awrbL0608Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awrbL0895Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rbtwR0725Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR0793Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR0875Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbuhR0612Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rbuhR0623Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rbuhR0756Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dttrbL0901Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dfirbL0315Gossypium aridum (D4) genome ISU_v1Gossypium aridum
drirbL1390Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dsirbL0552Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dqirbL0325Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
grhrbL0572Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhrbL0879Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grzrbL0550Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS_VKGE|Gotom.A12G099100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGI|Godar.D12G109500.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Ghe02G17460Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Gh_A12G0834Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GB_D03G0472Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
EVM_prediction_Ga12G2018Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gbar_D12G009870.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
TURN.02g345130.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
TURN.02g034070.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Gohir.A12G092400.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gbscaffold2008.9.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gene-E1A91_D12G104400v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GH_D12G1054Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gh_A02G1298Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GH_A02G1603Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gohir.D03G046500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghicr24_A12G098200.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
mikado.F12G3242.1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Gh_D12G105100.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gh_D03G049900.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gar12G12400Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Ghi_D12G06641Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
GB_A02G1634Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
GH_D03G0473Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gar02G15960Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Gohir.A02G135500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
CotAD_70268Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
CotAD_44379Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gh_D12G0898Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GH_A12G0980Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
rna-gnl|WGS_VKGI|Godar.A12G098500.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.A12G091000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Ghe12G08650Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Gh_D03G0438Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.D12G093700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Cotton_A_11258Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Kirkii_Juiced.00g151770.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
GB_D12G1090Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Ghir_D12G009940.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gbar_A12G009910.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
GB_A12G1099Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gh_A02G164500.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghicr24_D12G101400.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Ghi_A02G07946Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rna-gnl|WGS:JABFAA|Goari_00013032-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
rna-gnl|WGS:VKDL|Gobar.D12G104000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gohir.D12G093700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gh_A12G100300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Grai_12G012050.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00008673-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
Grai_02G005190.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
XM_012581964.2Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
Gorai.008G101700.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Relationships

The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10023869_three_prime_UTR_1Cotton_D_gene_10023869_three_prime_UTR_1-BGI-CGP_v1.0Gossypium raimondiithree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10023869_CDS_2Cotton_D_gene_10023869_CDS_2-BGI-CGP_v1.0Gossypium raimondiiCDS
Cotton_D_gene_10023869_CDS_1Cotton_D_gene_10023869_CDS_1-BGI-CGP_v1.0Gossypium raimondiiCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10023869_five_prime_UTR_1Cotton_D_gene_10023869_five_prime_UTR_1-BGI-CGP_v1.0Gossypium raimondiifive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10023869Cotton_D_gene_10023869-BGI-CGP_v1.0Gossypium raimondiipolypeptide


Homology
[Close]
BLAST of Cotton_D_gene_10023869 vs. Malus x Domestica v1.0
Match: MDP0000898826 (MDP0000898826)

HSP 1 Score: 95.9005 bits (237), Expect = 7.096e-21
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    6 EKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            +K   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKR+VSRASLGNEEE +
Sbjct:    2 QKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKRDVSRASLGNEEELV 55
[Close]
BLAST of Cotton_D_gene_10023869 vs. Malus x Domestica v1.0
Match: MDP0000677189 (MDP0000677189)

HSP 1 Score: 92.4337 bits (228), Expect = 8.045e-20
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    7 KIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            K   WLSVPQFGDW+QKGQ  +PDYSLDFSKIRE+RKQNKR+VSRASLGNEEE I
Sbjct:   23 KNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREVRKQNKRDVSRASLGNEEELI 75
[Close]
BLAST of Cotton_D_gene_10023869 vs. Vitis vinifera
Match: GSVIVT01022234001 (assembled CDS)

HSP 1 Score: 108.227 bits (269), Expect = 6.239e-25
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKR+VSRASLGNEEE +
Sbjct:    1 MEDRKEKAAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKRDVSRASLGNEEELV 59
[Close]
BLAST of Cotton_D_gene_10023869 vs. Vitis vinifera
Match: GSVIVT01037326001 (assembled CDS)

HSP 1 Score: 57.3806 bits (137), Expect = 1.306e-9
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEF 60
            ME+RKEK  AW+SVPQFG W+QK  G   +YS+ FS+ R  +KQ K +++  SLGNE E 
Sbjct:   48 MENRKEK-NAWMSVPQFGGWDQKTGGAT-NYSMIFSQARANKKQQKADINN-SLGNEREL 104
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G09960.1 (| sorbin/SH3 domain protein | Chr5:3106503-3107658 FORWARD LENGTH=112 | 201606)

HSP 1 Score: 114.775 bits (286), Expect = 1.943e-34
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0 
Query:    2 EDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTT----DDHHHYPPTHH 85
            +DRKEK   WLSVPQFGDW+QKG G +PDYS+DF+KIREMRKQNKR+ SRASLGNEEE I P  +  +TA  T    ++   + P+HH
Sbjct:    3 DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPESATSTAELTTVQSENQREFSPSHH 90
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G09960.3 (| sorbin/SH3 domain protein | Chr5:3107000-3107658 FORWARD LENGTH=110 | 201606)

HSP 1 Score: 106.686 bits (265), Expect = 3.554e-31
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:   11 WLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTT----DDHHHYPPTHH 85
            WLSVPQFGDW+QKG G +PDYS+DF+KIREMRKQNKR+ SRASLGNEEE I P  +  +TA  T    ++   + P+HH
Sbjct:   10 WLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPESATSTAELTTVQSENQREFSPSHH 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G64850.1 (| sorbin/SH3 domain protein | Chr5:25921585-25923038 FORWARD LENGTH=114 | 201606)

HSP 1 Score: 96.6709 bits (239), Expect = 3.574e-27
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:    1 MEDRKE-KIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINP 63
            MEDRKE K   WLSVPQFGDW+QKG G + DYS+DFSKIREMRK NKR+ SRASLGNEEE INP
Sbjct:    1 MEDRKENKNSPWLSVPQFGDWDQKG-GSI-DYSMDFSKIREMRKLNKRDASRASLGNEEELINP 62
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G09960.2 (| sorbin/SH3 domain protein | Chr5:3107183-3107658 FORWARD LENGTH=84 | 201606)

HSP 1 Score: 74.3294 bits (181), Expect = 1.081e-18
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0 
Query:   28 LPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTT----DDHHHYPPTHH 85
            +PDYS+DF+KIREMRKQNKR+ SRASLGNEEE I P  +  +TA  T    ++   + P+HH
Sbjct:    1 MPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPESATSTAELTTVQSENQREFSPSHH 62
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G19473.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:6569268-6570680 FORWARD LENGTH=99 | 201606)

HSP 1 Score: 63.1586 bits (152), Expect = 3.016e-14
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:    3 DRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            D++ +  AW  VPQFG W+QKG     +YS+ FSK R  RKQNK  V  +SLG+E+E +
Sbjct:    2 DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELM 60
[Close]
BLAST of Cotton_D_gene_10023869 vs. TAIR10
Match: AT5G19473.2 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:6569421-6570680 FORWARD LENGTH=134 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 9.905e-13
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0 
Query:    9 GAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
             AW  VPQFG W+QKG     +YS+ FSK R  RKQNK  V  +SLG+E+E +
Sbjct:   43 AAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELM 95
[Close]
BLAST of Cotton_D_gene_10023869 vs. Prunus Persica v1.0
Match: ppa013840m ()

HSP 1 Score: 106.686 bits (265), Expect = 2.223e-24
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKR+VSRASLGNEEE I
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKRDVSRASLGNEEELI 59
[Close]
BLAST of Cotton_D_gene_10023869 vs. Prunus Persica v1.0
Match: ppa027227m ()

HSP 1 Score: 49.2914 bits (116), Expect = 3.906e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 AWLSVPQFGDWEQKGQGQLPD---YSLDFSKIREMRKQNKREVS---RASLGNEEEFI 61
            A  SVPQFG W+Q G    PD   Y++ F++ R  RKQNK +++   R SLGNE+EF+
Sbjct:    3 ARRSVPQFGGWDQNG----PDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL 56
[Close]
BLAST of Cotton_D_gene_10023869 vs. Populus trichicarpa v2.0
Match: POPTR_0007s06610.1 ()

HSP 1 Score: 101.679 bits (252), Expect = 1.099e-22
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 MEDRKEKIGA-WLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFIN 62
            MEDRK++  A WLSVPQFGDW+QKG+  LPDYSLDFSKIREMRKQNK++VSRASLGNEEE IN
Sbjct:    1 MEDRKDQKNAPWLSVPQFGDWDQKGE--LPDYSLDFSKIREMRKQNKKDVSRASLGNEEELIN 61
[Close]
BLAST of Cotton_D_gene_10023869 vs. Populus trichicarpa v2.0
Match: POPTR_0005s08670.1 ()

HSP 1 Score: 96.6709 bits (239), Expect = 3.506e-21
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 MEDRKEKIGA-WLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFIN 62
            MEDRK++  A WLSVPQFGDW+QKG+  LPDYS+DFSKIREMRKQNKR+ SRASLG EEE IN
Sbjct:    1 MEDRKDQKNAPWLSVPQFGDWDQKGE--LPDYSVDFSKIREMRKQNKRDASRASLGKEEELIN 61
[Close]
BLAST of Cotton_D_gene_10023869 vs. Populus trichicarpa v2.0
Match: POPTR_0001s28010.1 ()

HSP 1 Score: 51.9878 bits (123), Expect = 9.111e-8
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLP-DYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            ME R++  G  LSVPQFG W  K    +P DYS+ F++ R  R+Q+K +V  ASLGNE E +
Sbjct:    1 MERRRKNGG--LSVPQFGGWNSKNP--VPTDYSVVFTQARANRRQHKSDVRHASLGNERELL 58
[Close]
BLAST of Cotton_D_gene_10023869 vs. Populus trichicarpa v2.0
Match: POPTR_0009s07190.1 ()

HSP 1 Score: 51.6026 bits (122), Expect = 1.418e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   12 LSVPQFGDWEQKGQGQLP-DYSLDFSKIREMRKQNKREVSRASLGNEEEFI 61
            LSVPQFG W+ K    +P +YS+ F++ R  RKQ+K +V  ASLGNE E +
Sbjct:   28 LSVPQFGAWDSKNP--VPTNYSMVFTRARANRKQHKSDVRHASLGNERELL 76
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A0D2RD18_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G101700 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.018e-60
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A1U8N7G1_GOSHI (uncharacterized protein LOC107945513 OS=Gossypium hirsutum OX=3635 GN=LOC107945513 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.349e-58
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDW+QKGQGQLPDYSLDFSKIREMR QNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWQQKGQGQLPDYSLDFSKIREMRMQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A2P5SG16_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04986 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.208e-57
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDW+QKGQGQLPDYSLDFSKIREMR QNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWQQKGQGQLPDYSLDFSKIREMRMQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A2P5YAP8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07991 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.095e-55
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFIFK 96
            MEDRKEK GAWLSVPQFGDWEQKGQGQ+PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTT  TTDDHHHYPPTHHSPTVSIDFIFK
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWEQKGQGQMPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTTRTTDDHHHYPPTHHSPTVSIDFIFK 96
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A1U8M3L7_GOSHI (uncharacterized protein LOC107933641 OS=Gossypium hirsutum OX=3635 GN=LOC107933641 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.032e-49
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDWEQKGQGQ+PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTT  TTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWEQKGQGQMPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTTRTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A061DIG5_THECC (Defence response isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_001253 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.940e-48
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVS 90
            MEDRKEK   WLSVPQFGDWEQKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTAT+V+TAP +DDHHHYP  HHSPTV+
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWEQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATSVSTAP-SDDHHHYPQNHHSPTVT 87
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A0D2QFP8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G047500 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.536e-46
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFI 94
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTA TV+T P+ D HH+YP  HHSP+    F 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTANTVSTTPSDDHHHNYPQNHHSPSTRRSFF 92
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A0B0P0J5_GOSAR (Secernin-2 OS=Gossypium arboreum OX=29729 GN=F383_07352 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.536e-46
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFI 94
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTA TV+T P+ D HH+YP  HHSP+    F 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTANTVSTTPSDDHHHNYPQNHHSPSTRRSFF 92
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A2P5QXM5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA21937 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.536e-46
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFI 94
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTA TV+T P+ D HH+YP  HHSP+    F 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTANTVSTTPSDDHHHNYPQNHHSPSTRRSFF 92
[Close]
BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Match: A0A1U8NPQ5_GOSHI (uncharacterized protein LOC107950608 OS=Gossypium hirsutum OX=3635 GN=LOC107950608 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.536e-46
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFI 94
            MEDRKEK   WLSVPQFGDW+QKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTA TV+T P+ D HH+YP  HHSP+    F 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTANTVSTTPSDDHHHNYPQNHHSPSTRRSFF 92
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|823207695|ref|XP_012437418.1| (PREDICTED: uncharacterized protein LOC105763669 [Gossypium raimondii] >gi|763782047|gb|KJB49118.1| hypothetical protein B456_008G101700 [Gossypium raimondii])

HSP 1 Score: 188.734 bits (478), Expect = 2.402e-60
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1029113119|ref|XP_016735041.1| (PREDICTED: uncharacterized protein LOC107945513 [Gossypium hirsutum])

HSP 1 Score: 182.57 bits (462), Expect = 7.558e-58
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDW+QKGQGQLPDYSLDFSKIREMR QNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWQQKGQGQLPDYSLDFSKIREMRMQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1344125445|gb|PPD97989.1| (hypothetical protein GOBAR_DD04986 [Gossypium barbadense])

HSP 1 Score: 181.8 bits (460), Expect = 1.438e-57
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDW+QKGQGQLPDYSLDFSKIREMR QNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWQQKGQGQLPDYSLDFSKIREMRMQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1050625181|ref|XP_017635442.1| (PREDICTED: uncharacterized protein LOC108477413 [Gossypium arboreum])

HSP 1 Score: 180.644 bits (457), Expect = 3.363e-57
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTT  TTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTTRTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1347716039|gb|PPS12650.1| (hypothetical protein GOBAR_AA07991 [Gossypium barbadense])

HSP 1 Score: 176.792 bits (447), Expect = 1.304e-55
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFIFK 96
            MEDRKEK GAWLSVPQFGDWEQKGQGQ+PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTT  TTDDHHHYPPTHHSPTVSIDFIFK
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWEQKGQGQMPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTTRTTDDHHHYPPTHHSPTVSIDFIFK 96
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1029109330|ref|XP_016721391.1| (PREDICTED: uncharacterized protein LOC107933641 [Gossypium hirsutum])

HSP 1 Score: 161.77 bits (408), Expect = 1.229e-49
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPT 88
            MEDRKEK GAWLSVPQFGDWEQKGQGQ+PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTT  TTDDHHHYPPTHHSPT
Sbjct:    1 MEDRKEKNGAWLSVPQFGDWEQKGQGQMPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTTRTTDDHHHYPPTHHSPT 88
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1063463473|ref|XP_017984005.1| (PREDICTED: uncharacterized protein LOC18611682 isoform X2 [Theobroma cacao])

HSP 1 Score: 159.844 bits (403), Expect = 6.539e-49
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVS 90
            MEDRKEK   WLSVPQFGDWEQKGQ  LPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTAT+V+TAP +DDHHHYP  HHSPTV+
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWEQKGQ--LPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATSVSTAP-SDDHHHYPQNHHSPTVT 87
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|508700389|gb|EOX92285.1| (Defence response isoform 1 [Theobroma cacao])

HSP 1 Score: 158.303 bits (399), Expect = 2.309e-48
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVS 90
            MEDRKEK   WLSVPQFGDWEQKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTAT+V+TAP +DDHHHYP  HHSPTV+
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWEQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATSVSTAP-SDDHHHYPQNHHSPTVT 87
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1063463471|ref|XP_007048129.2| (PREDICTED: uncharacterized protein LOC18611682 isoform X1 [Theobroma cacao])

HSP 1 Score: 158.303 bits (399), Expect = 2.946e-48
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTV 89
            MEDRKEK   WLSVPQFGDWEQKGQ  LPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTAT+V+TAP +DDHHHYP  HHSPT 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWEQKGQ--LPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATSVSTAP-SDDHHHYPQNHHSPTT 86
[Close]
BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Match: gi|1204886051|ref|XP_021274534.1| (uncharacterized protein LOC110409498 [Herrania umbratica])

HSP 1 Score: 156.377 bits (394), Expect = 1.253e-47
Identity = 76/89 (85.39%), Postives = 80/89 (89.89%), Query Frame = 0 
Query:    1 MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTV 89
            MEDRKEK   WLSVPQFGDWEQKGQ  +PDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTAT+V+TAP +DDHHHYP  HHSPT 
Sbjct:    1 MEDRKEKNAPWLSVPQFGDWEQKGQ--VPDYSLDFSKIREMRKQNKREVSRASLGNEEEFINPTATSVSTAP-SDDHHHYPQNHHSPTT 86
The following BLAST results are available for this feature:
BLAST of Cotton_D_gene_10023869 vs. Malus x Domestica v1.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Malus x domestica Genome v1.0)
Total hits: 2
Match NameE-valueIdentityDescription
MDP00008988267.096e-2180.36MDP0000898826[more]
MDP00006771898.045e-2081.82MDP0000677189[more]
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BLAST of Cotton_D_gene_10023869 vs. Vitis vinifera
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Vitis vinifera Genome v2.0)
Total hits: 2
Match NameE-valueIdentityDescription
GSVIVT010222340016.239e-2583.61assembled CDS[more]
GSVIVT010373260011.306e-953.33assembled CDS[more]
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BLAST of Cotton_D_gene_10023869 vs. TAIR10
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Araport11)
Total hits: 6
Match NameE-valueIdentityDescription
AT5G09960.11.943e-3461.36| sorbin/SH3 domain protein | Chr5:3106503-3107658... [more]
AT5G09960.33.554e-3162.03| sorbin/SH3 domain protein | Chr5:3107000-3107658... [more]
AT5G64850.13.574e-2778.13| sorbin/SH3 domain protein | Chr5:25921585-259230... [more]
AT5G09960.21.081e-1856.45| sorbin/SH3 domain protein | Chr5:3107183-3107658... [more]
AT5G19473.13.016e-1449.15| RPM1-interacting protein 4 (RIN4) family protein... [more]
AT5G19473.29.905e-1352.83| RPM1-interacting protein 4 (RIN4) family protein... [more]
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BLAST of Cotton_D_gene_10023869 vs. Prunus Persica v1.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Prunus persica Genome v1.0)
Total hits: 2
Match NameE-valueIdentityDescription
ppa013840m2.223e-2485.25[more]
ppa027227m3.906e-748.28[more]
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BLAST of Cotton_D_gene_10023869 vs. Populus trichicarpa v2.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Populus Genome v2.0)
Total hits: 4
Match NameE-valueIdentityDescription
POPTR_0007s06610.11.099e-2280.95[more]
POPTR_0005s08670.13.506e-2177.78[more]
POPTR_0001s28010.19.111e-848.39[more]
POPTR_0009s07190.11.418e-750.98[more]
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BLAST of Cotton_D_gene_10023869 vs. ExPASy TrEMBL
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0D2RD18_GOSRA2.018e-60100.00Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8N7G1_GOSHI6.349e-5896.59uncharacterized protein LOC107945513 OS=Gossypium ... [more]
A0A2P5SG16_GOSBA1.208e-5796.59Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5YAP8_GOSBA1.095e-5595.83Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8M3L7_GOSHI1.032e-4995.45uncharacterized protein LOC107933641 OS=Gossypium ... [more]
A0A061DIG5_THECC1.940e-4885.56Defence response isoform 1 OS=Theobroma cacao OX=3... [more]
A0A0D2QFP8_GOSRA9.536e-4676.60Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0B0P0J5_GOSAR9.536e-4676.60Secernin-2 OS=Gossypium arboreum OX=29729 GN=F383_... [more]
A0A2P5QXM5_GOSBA9.536e-4676.60Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8NPQ5_GOSHI9.536e-4676.60uncharacterized protein LOC107950608 OS=Gossypium ... [more]
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BLAST of Cotton_D_gene_10023869 vs. NCBI nr
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|823207695|ref|XP_012437418.1|2.402e-60100.00PREDICTED: uncharacterized protein LOC105763669 [G... [more]
gi|1029113119|ref|XP_016735041.1|7.558e-5896.59PREDICTED: uncharacterized protein LOC107945513 [G... [more]
gi|1344125445|gb|PPD97989.1|1.438e-5796.59hypothetical protein GOBAR_DD04986 [Gossypium barb... [more]
gi|1050625181|ref|XP_017635442.1|3.363e-5796.59PREDICTED: uncharacterized protein LOC108477413 [G... [more]
gi|1347716039|gb|PPS12650.1|1.304e-5595.83hypothetical protein GOBAR_AA07991 [Gossypium barb... [more]
gi|1029109330|ref|XP_016721391.1|1.229e-4995.45PREDICTED: uncharacterized protein LOC107933641 [G... [more]
gi|1063463473|ref|XP_017984005.1|6.539e-4986.67PREDICTED: uncharacterized protein LOC18611682 iso... [more]
gi|508700389|gb|EOX92285.1|2.309e-4885.56Defence response isoform 1 [Theobroma cacao][more]
gi|1063463471|ref|XP_007048129.2|2.946e-4886.52PREDICTED: uncharacterized protein LOC18611682 iso... [more]
gi|1204886051|ref|XP_021274534.1|1.253e-4785.39uncharacterized protein LOC110409498 [Herrania umb... [more]
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BLAST of Cotton_D_gene_10023869 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs UniProt Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis of Gossypium raimondii D Genome v1.0 (BGI-CGP)
Date Performed: 2012-11-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 63..90
score: NAcoord: 91..102
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cotton_D_gene_10023869-BGI-CGP_v1.0 ID=Cotton_D_gene_10023869-BGI-CGP_v1.0; Name=Cotton_D_gene_10023869; organism=Gossypium raimondii; type=mRNA; length=1255bp
AGAATACCAATTCGGTGGCTTTCTATCAGTTTTGCTGTGAGAGCTCCCTC
AATCCCCACAGTTTTCTCCTCTCAAACTCTAACTTTTAAAACTTCGGCAA
AATCACCTTTGTTCTTTTTTCTTTTTGGTGTCAAGCATGGAAGACCGTAA
GGAGGTGAGTTTTTTTTTCTTTTTTGGGGGTTTTAGCCTCCGTTTTATAT
TGTTGAGAAAAAAGAAAGGAAATTGAGCTCAGGGTTGAAGCTAAACTACA
TGTTTATCTTACTGGGTATGTATATTCTTTACCTTAGTTCCATGAAAAAA
TCGATAATCGTAGAGTTGAAAAAAAAGATTATGGTATAAGTGCTTTATTT
AGTCTAAATAAGCTTTTAGTCCCTATACTCTTCTAGTTTTTAAAATTTAA
TCCTTCAGCTTTGGTTGATTTTCTTACTGTGTCTAGAGATTTGTGCCTGT
TGGCTAATGCTATCCGGCGGTGTGATGAATTCTCTGCCACTGAAATTTTA
ATTCACAGCTTTTAAAATAAATATCCTTTTGACTTTTGAAACGCAATCAA
CACTTTTTTTTTAGAGCTGAAAACTTGGTTCAGACTTCAGACTTTCAGCA
TTGGGATTACTTTTTAATTGCAGCTTTTTTGAATCTCCATATCTGCTTTC
TATGCCACCTTTTTCTTTTGAGCCAATGGTGAAAGAGAGGCTTTGAGCAG
TTATGGTGTTTTTGTTAATAAAATTTCAGAACTGTTGAATAAAATGGAGC
AGCAGATTGTGAATGTGGGAATTGGGATTTCATTGTTTTGAACTACCAAC
AAATTTGGTTTTCTTAAATACTAGTGATTGTGATCAAACAATGCTGAAGT
TAAAAGCATGGAGGTAGAGTTAATTAAGGTATTGATTTGGTTGTGAAACT
TGAAATAGAAAATTGGAGCATGGCTATCAGTGCCACAATTTGGGGACTGG
GAGCAGAAAGGGCAAGGGCAGCTGCCAGATTACTCACTTGACTTCTCAAA
GATTAGGGAAATGAGGAAGCAAAACAAGAGGGAAGTTTCAAGAGCCAGTC
TTGGGAATGAAGAAGAGTTTATTAACCCAACCGCCACCACTGTTACCACT
GCCCCTACTACAGATGATCACCACCATTACCCTCCCACTCATCACTCTCC
AACCGTAAGTATAGATTTCATTTTCAAAATAATAGATCAGATTAAAAATG
TTTAAGTTGATGAGTTTTCATGTTATAAATTGAGTTAGGGTAAATTAGTC
ACAGC
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protein sequence of Cotton_D_gene_10023869

>Cotton_D_gene_10023869-BGI-CGP_v1.0 ID=Cotton_D_gene_10023869-BGI-CGP_v1.0; Name=Cotton_D_gene_10023869; organism=Gossypium raimondii; type=polypeptide; length=104bp
MEDRKEKIGAWLSVPQFGDWEQKGQGQLPDYSLDFSKIREMRKQNKREVS
RASLGNEEEFINPTATTVTTAPTTDDHHHYPPTHHSPTVSIDFIFKIIDQ
IKNV
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mRNA from alignment at Chr8:53180199..53181453-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cotton_D_gene_10023869-BGI-CGP_v1.0 ID=Cotton_D_gene_10023869-BGI-CGP_v1.0; Name=Cotton_D_gene_10023869; organism=Gossypium raimondii; type=mRNA; length=1255bp; location=Sequence derived from: Chr8:53180199..53181453- (Gossypium raimondii
AGAATACCAATTCGGTGGCTTTCTATCAGTTTTGCTGTGAGAGCTCCCTC
AATCCCCACAGTTTTCTCCTCTCAAACTCTAACTTTTAAAACTTCGGCAA
AATCACCTTTGTTCTTTTTTCTTTTTGGTGTCAAGCATGGAAGACCGTAA
GGAGGTGAGTTTTTTTTTCTTTTTTGGGGGTTTTAGCCTCCGTTTTATAT
TGTTGAGAAAAAAGAAAGGAAATTGAGCTCAGGGTTGAAGCTAAACTACA
TGTTTATCTTACTGGGTATGTATATTCTTTACCTTAGTTCCATGAAAAAA
TCGATAATCGTAGAGTTGAAAAAAAAGATTATGGTATAAGTGCTTTATTT
AGTCTAAATAAGCTTTTAGTCCCTATACTCTTCTAGTTTTTAAAATTTAA
TCCTTCAGCTTTGGTTGATTTTCTTACTGTGTCTAGAGATTTGTGCCTGT
TGGCTAATGCTATCCGGCGGTGTGATGAATTCTCTGCCACTGAAATTTTA
ATTCACAGCTTTTAAAATAAATATCCTTTTGACTTTTGAAACGCAATCAA
CACTTTTTTTTTAGAGCTGAAAACTTGGTTCAGACTTCAGACTTTCAGCA
TTGGGATTACTTTTTAATTGCAGCTTTTTTGAATCTCCATATCTGCTTTC
TATGCCACCTTTTTCTTTTGAGCCAATGGTGAAAGAGAGGCTTTGAGCAG
TTATGGTGTTTTTGTTAATAAAATTTCAGAACTGTTGAATAAAATGGAGC
AGCAGATTGTGAATGTGGGAATTGGGATTTCATTGTTTTGAACTACCAAC
AAATTTGGTTTTCTTAAATACTAGTGATTGTGATCAAACAATGCTGAAGT
TAAAAGCATGGAGGTAGAGTTAATTAAGGTATTGATTTGGTTGTGAAACT
TGAAATAGAAAATTGGAGCATGGCTATCAGTGCCACAATTTGGGGACTGG
GAGCAGAAAGGGCAAGGGCAGCTGCCAGATTACTCACTTGACTTCTCAAA
GATTAGGGAAATGAGGAAGCAAAACAAGAGGGAAGTTTCAAGAGCCAGTC
TTGGGAATGAAGAAGAGTTTATTAACCCAACCGCCACCACTGTTACCACT
GCCCCTACTACAGATGATCACCACCATTACCCTCCCACTCATCACTCTCC
AACCGTAAGTATAGATTTCATTTTCAAAATAATAGATCAGATTAAAAATG
TTTAAGTTGATGAGTTTTCATGTTATAAATTGAGTTAGGGTAAATTAGTC
ACAGC
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Coding sequence (CDS) from alignment at Chr8:53180199..53181453-

>Cotton_D_gene_10023869-BGI-CGP_v1.0 ID=Cotton_D_gene_10023869-BGI-CGP_v1.0; Name=Cotton_D_gene_10023869; organism=Gossypium raimondii; type=CDS; length=315bp; location=Sequence derived from: Chr8:53180199..53181453- (Gossypium raimondii
ATGGAAGACCGTAAGGAGAAAATTGGAGCATGGCTATCAGTGCCACAATT
TGGGGACTGGGAGCAGAAAGGGCAAGGGCAGCTGCCAGATTACTCACTTG
ACTTCTCAAAGATTAGGGAAATGAGGAAGCAAAACAAGAGGGAAGTTTCA
AGAGCCAGTCTTGGGAATGAAGAAGAGTTTATTAACCCAACCGCCACCAC
TGTTACCACTGCCCCTACTACAGATGATCACCACCATTACCCTCCCACTC
ATCACTCTCCAACCGTAAGTATAGATTTCATTTTCAAAATAATAGATCAG
ATTAAAAATGTTTAA
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