Gohir.D01G135900.1

Transcript Overview
NameGohir.D01G135900.1
Unique NameddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length875
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:43247533..43248855 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
aduaduL0019Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduL0017Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adsaduL0015Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
aduaduR0787Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduL0697Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adsaduL0651Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adugdR0756Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugdR0783Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugecR0852Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adugecR0885Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adutoR0666Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aduhgsR0695Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adutoR0688Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aduhgsR0719Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
aduhnR0932Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR0939Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR0956Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduawR0653Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adub1jR0680Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aduawR0719Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adub1jR0743Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aduuhR0648Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduuhR0673Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
adud3dR0727Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adud8iR0495Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud8iR0502Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud8iR0511Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud3kR0548Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adud9iR0513Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adudfiR0502Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudfiR0505Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudsiR0455Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudsiR0458Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudooR0520Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudtoR0454Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adudooR0526Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudqiR0527Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adudtcR0671Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
adugauR0525Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adugauR0574Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adufnR0656Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adugkR0555Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adugrbR0618Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adugrbR0691Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adugosR0659Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adugosR0711Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adugroR0711Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugroR0731Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugroR0785Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugrhR0666Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugrhR0670Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugtiR0710Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adugtbR0660Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
aduhwR0666Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aduhwR0722Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gohir.D01G135900ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.v3.1Gossypium hirsutumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.5ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.5Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.4ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.4Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.3ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.3Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.2ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.2Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.exon.1Gossypium hirsutumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.three_prime_UTR.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.three_prime_UTR.1Gossypium hirsutumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.5ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.5Gossypium hirsutumCDS
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.4ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.4Gossypium hirsutumCDS
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.3ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.3Gossypium hirsutumCDS
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.2ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.2Gossypium hirsutumCDS
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.CDS.1Gossypium hirsutumCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.five_prime_UTR.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1.five_prime_UTR.1Gossypium hirsutumfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1Gossypium hirsutumpolypeptide
ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1-proteinGossypium hirsutumpolypeptide


Homology
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT2G01990.2 (| Symbols: no symbol available | no full name available | chr2:465197-466748 REVERSE LENGTH=244)

HSP 1 Score: 202.216 bits (513), Expect = 2.105e-64
Identity = 129/262 (49.24%), Postives = 160/262 (61.07%), Query Frame = 0 
Query:   21 WDLQNLGVL-----NADMSLVMDGSGTAPF-FPHLD-SDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCM-SQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG* 274
            WD+ NLG L     N D    M+ S    F  P +D SD S+GYLEDAL+E  E SKRRRLL  +    FN  +D +         +WGL E++SC+ SQ  + +  + E +S  VS  +  I    ++P+ ++             SY     + KS     T+ SS +     KR+IT++VYPF LVKPGG E D+TLNDINERILM P+RP+RHPVGDFA RPCVS  GPGLSGKAVVALTKI TQGRGTITIIRTKG*
Sbjct:   11 WDIHNLGSLFKPDFNLDTCGFMNRSPEHIFGSPEIDYSDVSTGYLEDALIESGERSKRRRLLFEDPSKSFN--DDDSQN-------DWGLHESYSCLNSQFVTPHVNTGERIS-GVSYCQETISNVYESPDTSV-------------SYDKIYVREKS----PTEPSSSNCGNKNKRLITKLVYPFGLVKPGGRENDVTLNDINERILMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQGRGTITIIRTKG* 245
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT1G14630.1 (| Symbols: no symbol available | no full name available | chr1:5019995-5021445 FORWARD LENGTH=226)

HSP 1 Score: 199.519 bits (506), Expect = 1.493e-63
Identity = 129/261 (49.43%), Postives = 157/261 (60.15%), Query Frame = 0 
Query:   21 WDLQNLGVL-----NADMSLVMDGSGTAPFF-PHLD-SDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG* 274
            WDL NLG L     N D   ++D S    F  P ++  D S+GYLEDAL+EF+  SKRRRL        FNG  D       +   +WGLSEN+SC S     +  +DE  ++S+     NI +E            E++  SS +S++ S++ SK              D  +K+   RVVYPF +VKPGG E D+TLNDIN+RILMP  RPVRHPVGDFACRPCVSADGPGLSGKAVVA TKI T GRGTITIIRTKG*
Sbjct:   11 WDLHNLGSLFNQNFNLDAWGLIDESPENIFCSPEMEIGDVSTGYLEDALIEFSGRSKRRRL-------SFNGAEDKPDNDLDHSQNHWGLSENYSCTS-----SQFADESPNSSI-----NICSE------------EKSSISSRNSFEPSSSTSKK------------NDYDEKK---RVVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVVAFTKIQTLGRGTITIIRTKG* 227
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT2G01990.1 (| Symbols: no symbol available | no full name available | chr2:465197-466497 REVERSE LENGTH=213)

HSP 1 Score: 194.897 bits (494), Expect = 7.083e-62
Identity = 118/230 (51.30%), Postives = 147/230 (63.91%), Query Frame = 0 
Query:   47 PHLD-SDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCM-SQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG* 274
            P +D SD S+GYLEDAL+E  E SKRRRLL  +    FN  +D +         +WGL E++SC+ SQ  + +  + E +S  VS  +  I    ++P+ ++             SY     + KS     T+ SS +     KR+IT++VYPF LVKPGG E D+TLNDINERILM P+RP+RHPVGDFA RPCVS  GPGLSGKAVVALTKI TQGRGTITIIRTKG*
Sbjct:   12 PEIDYSDVSTGYLEDALIESGERSKRRRLLFEDPSKSFN--DDDSQN-------DWGLHESYSCLNSQFVTPHVNTGERIS-GVSYCQETISNVYESPDTSV-------------SYDKIYVREKS----PTEPSSSNCGNKNKRLITKLVYPFGLVKPGGRENDVTLNDINERILMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQGRGTITIIRTKG* 214
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT5G48720.3 (| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1, X-RAY INDUCED TRANSCRIPT | chr5:19760038-19761621 FORWARD LENGTH=266)

HSP 1 Score: 73.559 bits (179), Expect = 4.221e-15
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:  194 VVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQ-GRGTITIIRTKG* 274
            ++YPFA +KP G+ G MTL DIN++I  PP +P  H        P V       SGK VV  TKI T+ G+G+ITI+RT+G*
Sbjct:  192 IIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAVIQTS-AFSGKPVVGKTKIRTEGGKGSITIMRTRG* 267
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT5G48720.1 (| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1, X-RAY INDUCED TRANSCRIPT | chr5:19760038-19761621 FORWARD LENGTH=266)

HSP 1 Score: 73.559 bits (179), Expect = 4.221e-15
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:  194 VVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQ-GRGTITIIRTKG* 274
            ++YPFA +KP G+ G MTL DIN++I  PP +P  H        P V       SGK VV  TKI T+ G+G+ITI+RT+G*
Sbjct:  192 IIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAVIQTS-AFSGKPVVGKTKIRTEGGKGSITIMRTRG* 267
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT5G48720.4 (| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1, X-RAY INDUCED TRANSCRIPT | chr5:19759233-19761621 FORWARD LENGTH=300)

HSP 1 Score: 73.9442 bits (180), Expect = 4.419e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:  189 RVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQ-GRGTITIIRTKG* 274
            ++ + ++YPFA +KP G+ G MTL DIN++I  PP +P  H        P V       SGK VV  TKI T+ G+G+ITI+RT+G*
Sbjct:  221 KLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAV-IQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG* 301
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT5G48720.2 (| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1, X-RAY INDUCED TRANSCRIPT | chr5:19759233-19761621 FORWARD LENGTH=300)

HSP 1 Score: 73.9442 bits (180), Expect = 4.419e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:  189 RVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQ-GRGTITIIRTKG* 274
            ++ + ++YPFA +KP G+ G MTL DIN++I  PP +P  H        P V       SGK VV  TKI T+ G+G+ITI+RT+G*
Sbjct:  221 KLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAV-IQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG* 301
[Close]
BLAST of Gohir.D01G135900.1 vs. Araport11
Match: AT1G14630.2 (| Symbols: no symbol available | no full name available | chr1:5019995-5021016 FORWARD LENGTH=166)

HSP 1 Score: 61.2326 bits (147), Expect = 2.453e-11
Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = 0 
Query:   21 WDLQNLGVL-----NADMSLVMDGSGTAPFF-PHLD-SDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQL-------TSINGVSDEPMSTS 127
            WDL NLG L     N D   ++D S    F  P ++  D S+GYLEDAL+EF+  SKRRRL        FNG  D       +   +WGLSEN+SC S         +SIN  S+E  S S
Sbjct:   11 WDLHNLGSLFNQNFNLDAWGLIDESPENIFCSPEMEIGDVSTGYLEDALIEFSGRSKRRRL-------SFNGAEDKPDNDLDHSQNHWGLSENYSCTSSQFADESPNSSINICSEEKSSIS 124
[Close]
BLAST of Gohir.D01G135900.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6NLW5|XRI1_ARATH (Protein XRI1 OS=Arabidopsis thaliana OX=3702 GN=XRI1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.772e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:  189 RVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQ-GRGTITIIRTKG 273
            ++ + ++YPFA +KP G+ G MTL DIN++I  PP +P  H        P V       SGK VV  TKI T+ G+G+ITI+RT+G
Sbjct:  221 KLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAV-IQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium darwinii OX=34276 GN=ES288_D01G174800v1 PE=4 SV=1)

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium barbadense OX=3634 GN=ES319_D01G161500v1 PE=4 SV=1)

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium tomentosum OX=34277 GN=ES332_D01G177100v1 PE=4 SV=1)

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium raimondii OX=29730 GN=B456_002G170200 PE=4 SV=1)

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium darwinii OX=34276 GN=ES288_D01G174800v1 PE=4 SV=1)

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium tomentosum OX=34277 GN=ES332_D01G177100v1 PE=4 SV=1)

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium trilobum OX=34281 GN=Gotri_022758 PE=4 SV=1)

HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDK KKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKKKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium mustelinum OX=34275 GN=E1A91_D01G168200v1 PE=4 SV=1)

HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 271/273 (99.27%), Postives = 272/273 (99.63%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNS AYTSSSLHSPSLGWDLQNLGVLNA+MSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSTAYTSSSLHSPSLGWDLQNLGVLNANMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium davidsonii OX=34287 GN=Godav_019685 PE=4 SV=1)

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 271/273 (99.27%), Postives = 272/273 (99.63%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNSMAYTS+SLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDK KKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSMAYTSNSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKKKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
[Close]
BLAST of Gohir.D01G135900.1 vs.
Match: Protein (XRI1 OS=Gossypium mustelinum OX=34275 GN=E1A91_D01G168200v1 PE=4 SV=1)

HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 271/273 (99.27%), Postives = 272/273 (99.63%), Query Frame = 0 
Query:    1 MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
            MGELNS AYTSSSLHSPSLGWDLQNLGVLNA+MSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG
Sbjct:    1 MGELNSTAYTSSSLHSPSLGWDLQNLGVLNANMSLVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCNWGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRGTITIIRTKG 273
The following BLAST results are available for this feature:
BLAST of Gohir.D01G135900.1 vs. Araport11
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs arabidopsis Araport11)
Total hits: 8
Match NameE-valueIdentityDescription
AT2G01990.22.105e-6449.24| Symbols: no symbol available | no full name avai... [more]
AT1G14630.11.493e-6349.43| Symbols: no symbol available | no full name avai... [more]
AT2G01990.17.083e-6251.30| Symbols: no symbol available | no full name avai... [more]
AT5G48720.34.221e-1547.56| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1,... [more]
AT5G48720.14.221e-1547.56| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1,... [more]
AT5G48720.44.419e-1544.83| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1,... [more]
AT5G48720.24.419e-1544.83| Symbols: XRI1, XRI | X-RAY INDUCED TRANSCRIPT 1,... [more]
AT1G14630.22.453e-1141.32| Symbols: no symbol available | no full name avai... [more]
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BLAST of Gohir.D01G135900.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q6NLW5|XRI1_ARATH5.772e-1444.19Protein XRI1 OS=Arabidopsis thaliana OX=3702 GN=XR... [more]
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BLAST of Gohir.D01G135900.1 vs.
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
Protein0.000e+0100.00XRI1 OS=Gossypium darwinii OX=34276 GN=ES288_D01G1... [more]
Protein0.000e+0100.00XRI1 OS=Gossypium barbadense OX=3634 GN=ES319_D01G... [more]
Protein0.000e+0100.00XRI1 OS=Gossypium tomentosum OX=34277 GN=ES332_D01... [more]
Protein0.000e+0100.00XRI1 OS=Gossypium raimondii OX=29730 GN=B456_002G1... [more]
Protein0.000e+0100.00XRI1 OS=Gossypium darwinii OX=34276 GN=ES288_D01G1... [more]
Protein0.000e+0100.00XRI1 OS=Gossypium tomentosum OX=34277 GN=ES332_D01... [more]
Protein0.000e+099.63XRI1 OS=Gossypium trilobum OX=34281 GN=Gotri_02275... [more]
Protein0.000e+099.27XRI1 OS=Gossypium mustelinum OX=34275 GN=E1A91_D01... [more]
Protein0.000e+099.27XRI1 OS=Gossypium davidsonii OX=34287 GN=Godav_019... [more]
Protein0.000e+099.27XRI1 OS=Gossypium mustelinum OX=34275 GN=E1A91_D01... [more]
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InterPro
Analysis Name: InterProScan Analysis for UTX v3.1 Gossypium hirsutum 'TM-1' proteins
Date Performed: 2025-04-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039933Protein XRI1PANTHERPTHR33385PROTEIN XRI1coord: 21..273

Sequences
The following sequences are available for this feature:

mRNA sequence

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1; Name=Gohir.D01G135900.1; organism=Gossypium hirsutum; type=mRNA; length=875bp
GACCCTAAACCCCAACAAACATGGGTGAGCTTAACTCTATGGCTTACACT
AGTAGCAGCCTCCATAGCCCTTCCCTAGGTTGGGATCTTCAAAACCTTGG
AGTTCTCAACGCAGACATGTCTTTAGTCATGGATGGAAGTGGAACTGCCC
CATTCTTTCCACATCTTGACTCTGATTTCTCTTCTGGGTATCTGGAAGAT
GCATTGCTTGAATTCACTGAACCATCCAAACGAAGACGCCTCTTGTTGTA
CAATGATCATAATCAATTCAATGGTTTAAATGATCTTGCCATGCAGGGAT
ATTGGAATTATAGCTGCAACTGGGGCCTATCTGAGAATTTCAGCTGCATG
AGCCAGTTAACAAGCATTAATGGAGTTTCAGATGAACCAATGAGCACATC
GGTGAGCAGTGAGGAAGCAAACATTGTCACGGAGATAAAAACACCAGAAG
AGGCAATACCACGCAGCCCTGAAGAAGCTTTTGATTCATCATCTTCTTCT
TACAAAGTATCAACAGCCAAGAGCAAGTCATTTTTCAACAAAGACACCCA
AATTTCTTCTGGAAGTGAGGATAAGATGAAGAAAAGGGTGATAACAAGGG
TTGTTTATCCATTTGCATTGGTTAAGCCCGGAGGGATAGAAGGGGATATG
ACACTAAACGACATTAACGAAAGGATTCTAATGCCACCGACAAGGCCGGT
AAGGCACCCAGTGGGGGATTTCGCTTGTAGGCCATGCGTATCTGCGGATG
GTCCTGGGCTTTCTGGAAAAGCTGTGGTGGCCCTCACCAAAATACACACT
CAAGGGAGAGGCACCATCACTATTATCCGAACCAAAGGTTAAGGAAAGTC
AATTTCAAAAACTTGTTTCTGCTTG
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protein sequence of ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1; Name=ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1; organism=Gossypium hirsutum; type=polypeptide; length=274bp
MGELNSMAYTSSSLHSPSLGWDLQNLGVLNADMSLVMDGSGTAPFFPHLD
SDFSSGYLEDALLEFTEPSKRRRLLLYNDHNQFNGLNDLAMQGYWNYSCN
WGLSENFSCMSQLTSINGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSP
EEAFDSSSSSYKVSTAKSKSFFNKDTQISSGSEDKMKKRVITRVVYPFAL
VKPGGIEGDMTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGK
AVVALTKIHTQGRGTITIIRTKG*
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mRNA from alignment at D01:43247533..43248855-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1; Name=Gohir.D01G135900.1; organism=Gossypium hirsutum; type=mRNA; length=1323bp; location=Sequence derived from: D01:43247533..43248855- (Gossypium hirsutum
GACCCTAAACCCCAACAAACATGGGTGAGCTTAACTCTATGGCTTACACT
AGTAGCAGCCTCCATAGCCCTTCCCTAGGTTGGGATCTTCAAAACCTTGG
AGTTCTCAACGCAGACATGTCTTTAGGTACACACTCTTTTCTTGCTTTAT
TGTCTTCCAGTCTTTCTTTCACTGTTTGTTTTTCCTTTATGTTTTTAGTT
TAAAGGGAGTTTAACCCCATTTATGTTTCTCTGCATGTGAATGGAATGCA
GTCATGGATGGAAGTGGAACTGCCCCATTCTTTCCACATCTTGACTCTGA
TTTCTCTTCTGGGTATCTGGAAGATGCATTGCTTGAATTCACTGAACCAT
CCAAACGAAGACGCCTCTTGTTGTACAATGATCATAATCAATTCAATGGT
TTAAATGATCTTGCCATGGTATTTTTCCTTTTTTCTTTTTTTCTGGTTTT
CTTTTGTTTTTGTTTTACCAAATTAACAATGTGATCTGAACATGGCTAGT
TCCACTGTTATCATGCAGCAGGGATATTGGAATTATAGCTGCAACTGGGG
CCTATCTGAGAATTTCAGCTGCATGAGCCAGTTAACAAGCATTAATGGAG
TTTCAGGTAATGATTTACTATTCATTTTTCTCTTTTACTAGCCACCACGT
ACTTTCTCCCATCCCATGCATATATCAAATCGTATACAATGTTGAAATGA
TGCTTTGTATGGATTTTTTCCCCTTATACTTTAGATGAACCAATGAGCAC
ATCGGTGAGCAGTGAGGAAGCAAACATTGTCACGGAGATAAAAACACCAG
AAGAGGCAATACCACGCAGCCCTGAAGAAGCTTTTGATTCATCATCTTCT
TCTTACAAAGTATCAACAGCCAAGAGCAAGTCATTTTTCAACAAAGACAC
CCAAATTTCTTCTGGTAAATACGAAGGGAATTGTTACAATGCTTCTGTTG
ATGTTATTATAGCTAAATGATTTAACATTGATTTATGGTTTTATTGGTGG
GTTTTATAGGAAGTGAGGATAAGATGAAGAAAAGGGTGATAACAAGGGTT
GTTTATCCATTTGCATTGGTTAAGCCCGGAGGGATAGAAGGGGATATGAC
ACTAAACGACATTAACGAAAGGATTCTAATGCCACCGACAAGGCCGGTAA
GGCACCCAGTGGGGGATTTCGCTTGTAGGCCATGCGTATCTGCGGATGGT
CCTGGGCTTTCTGGAAAAGCTGTGGTGGCCCTCACCAAAATACACACTCA
AGGGAGAGGCACCATCACTATTATCCGAACCAAAGGTTAAGGAAAGTCAA
TTTCAAAAACTTGTTTCTGCTTG
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Coding sequence (CDS) from alignment at D01:43247533..43248855-

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D01G135900.1.v3.1; Name=Gohir.D01G135900.1; organism=Gossypium hirsutum; type=CDS; length=822bp; location=Sequence derived from: D01:43247533..43248855- (Gossypium hirsutum
ATGGGTGAGCTTAACTCTATGGCTTACACTAGTAGCAGCCTCCATAGCCC
TTCCCTAGGTTGGGATCTTCAAAACCTTGGAGTTCTCAACGCAGACATGT
CTTTAGTCATGGATGGAAGTGGAACTGCCCCATTCTTTCCACATCTTGAC
TCTGATTTCTCTTCTGGGTATCTGGAAGATGCATTGCTTGAATTCACTGA
ACCATCCAAACGAAGACGCCTCTTGTTGTACAATGATCATAATCAATTCA
ATGGTTTAAATGATCTTGCCATGCAGGGATATTGGAATTATAGCTGCAAC
TGGGGCCTATCTGAGAATTTCAGCTGCATGAGCCAGTTAACAAGCATTAA
TGGAGTTTCAGATGAACCAATGAGCACATCGGTGAGCAGTGAGGAAGCAA
ACATTGTCACGGAGATAAAAACACCAGAAGAGGCAATACCACGCAGCCCT
GAAGAAGCTTTTGATTCATCATCTTCTTCTTACAAAGTATCAACAGCCAA
GAGCAAGTCATTTTTCAACAAAGACACCCAAATTTCTTCTGGAAGTGAGG
ATAAGATGAAGAAAAGGGTGATAACAAGGGTTGTTTATCCATTTGCATTG
GTTAAGCCCGGAGGGATAGAAGGGGATATGACACTAAACGACATTAACGA
AAGGATTCTAATGCCACCGACAAGGCCGGTAAGGCACCCAGTGGGGGATT
TCGCTTGTAGGCCATGCGTATCTGCGGATGGTCCTGGGCTTTCTGGAAAA
GCTGTGGTGGCCCTCACCAAAATACACACTCAAGGGAGAGGCACCATCAC
TATTATCCGAACCAAAGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR039933XRI1
Vocabulary: Biological Process
TermDefinition
GO:0007143female meiotic nuclear division
GO:0007140male meiotic nuclear division