GH_A01G01575_HPF.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A8J5Z5T7_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_001382 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.241e-46 Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = 0 Query: 1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 MGS MRWED++V +IVKKCK K + + +IHNIKQVTGRFRTVRFTYVPQTANGLAHT AKEALRRRE SYLVRKVPVYVERALEVDWEREPD Sbjct: 57 MGSEMRWEDIIVEADSLSIVKKCKQKSRTNR-LSEHIHNIKQVTGRFRTVRFTYVPQTANGLAHTIAKEALRRRELSYLVRKVPVYVERALEVDWEREPD 155
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9LJR9_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002846 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.889e-24 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 Query: 5 MRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 M+W +++ AI+KKCKAK QD+S +G YIH+I+Q T R R + F Y P+ N LAH A E L+++E YLV+ +P Y E E DW REPD Sbjct: 1 MQWLQIIIEGNSLAIIKKCKAKSQDRSQVGVYIHDIQQGTTRSRNIVFKYTPRLTNALAHMLATEFLKKKEEVYLVKSIPGYAENHKETDWVREPD 96
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8MW76_9ROSI (RNase H type-1 domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_006372 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 5.166e-23 Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 11 LVAIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 L+ I+KKC+ K QD+S +GAYIH+I+Q+T F + F Y P++ANGLAH A + L+ E YL++ VP Y E+ DW REPD Sbjct: 66 LLGIIKKCQLKSQDRSQVGAYIHDIQQITDGFNNIVFKYTPRSANGLAHILATKYLKNCEEFYLLKNVPGYAEKQKNADWMREPD 150
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8N2G9_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_004758 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.323e-22 Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 0 Query: 14 IVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 I+KKC+ + DKS IGA++H+I+Q+ F+++ F + ++ NGLAH A E L+R E Y+V VPVY ER +E +WEREPD Sbjct: 1 IIKKCQTQNPDKSQIGAHVHDIQQLKDSFQSIVFNHTLRSTNGLAHILATETLKRSETVYMVGGVPVYTERVVEAEWEREPD 82
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9D756_GOSGO (RNase H type-1 domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020650 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.436e-22 Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 0 Query: 1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 +G M+WE++++ +I+KKC+ K DKS+IGAYIH+I+Q++ + + F Y+P+TAN LAH+ E ++ + YL+ KVP Y E+ E D REPD Sbjct: 163 LGIDMKWENIIIEGDSLSIIKKCRTKSHDKSLIGAYIHDIQQISLKTQKCSFEYIPRTANCLAHSIVTETMKSNKEVYLIGKVPEYAEKLNERDSVREPD 262
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9MG24_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002656 PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.845e-21 Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 0 Query: 7 WEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 W +V+V AI+KKC+ + DKS IGA++H+I+Q+ F+++ F + ++ NGLAH E L+R E Y+V VPVY + +E +WEREPD Sbjct: 2 WSEVIVEGDSLAIIKKCQTQNPDKSQIGAHVHDIQQLKDSFQSIVFNHTLRSTNGLAHILETETLKRSETVYMVGGVPVYTAQVVEAEWEREPD 95
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A8J6CUY1_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_018891 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 9.031e-21 Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 +G M+ +++++ +I+KKC K DKS IGAYIH+I Q+ + ++F Y P++ NGLAH AKE+LRR+E Y V VP+Y E + D EREPD Sbjct: 168 IGLDMQGKEIIIEGYSLSIIKKCNVKGGDKSKIGAYIHDIHQLKSKSSNLKFEYTPRSGNGLAHILAKESLRRKEEFYPVESVPIYAENRGKNDIEREPD 267
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8NJT4_9ROSI (RNase H type-1 domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_024070 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.320e-20 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 0 Query: 12 VAIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 +AI+KKC+ K QD+S +G YIH+I+Q+T RF + F Y ++ NGLAH A E+L++ E Y+++ VP Y E+ + DW RE D Sbjct: 67 LAIIKKCQLKSQDRSQVGVYIHDIQQITARFNNIVFKYTLRSTNGLAHILAIESLKKSEEFYMLKNVPGYAEKQKKADWMRELD 150
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A9D3UQ47_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium stocksii OX=47602 GN=J1N35_033291 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.990e-20 Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 0 Query: 5 MRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 M+W+ ++ +I+KKCK K DKS++GAYIH+I+Q+ ++R RF Y+P+ AN LAH A E L+ ++ YLV VP E+ E + REPD Sbjct: 1 MQWQKIIFEGDSSSIIKKCKVKSPDKSLVGAYIHDIQQLLLKYRNCRFEYIPRIANSLAHILATETLKNKKEIYLVGSVPESAEKQEERNRVREPD 96
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9N9W3_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_003809 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.830e-20 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0 Query: 1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95 MG M W +V V AI+KKC+ +KS IGA+I +I+Q+ F+++ F + P+ ANGLAH A E ++ + YLV PVY ER + V+W REPD Sbjct: 65 MGLEMGWSEVTVEGDSLAIIKKCQTHNPNKSQIGAHIQDIQQLKDSFQSIVFKHTPRLANGLAHILAIETQKKSKTDYLVGGAPVYAERVMVVEWVREPD 164 The following BLAST results are available for this feature:
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs UniProt TrEMBL) Total hits: 10
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs UniProt Swissprot ) Total hits: 0
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins
Date Performed: 2024-04-30
Sequences
The
following sequences are available for this feature:
mRNA sequence >GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=mRNA; length=288bpback to top protein sequence of GH_A01G01575_HPF.1_ZJU-HPF17 >GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1_ZJU-HPF17; organism=Gossypium hirsutum; type=polypeptide; length=95bpback to top mRNA from alignment at A01:69703261..69703548+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=mRNA; length=288bp; location=Sequence derived from: A01:69703261..69703548+ (Gossypium hirsutumback to top Coding sequence (CDS) from alignment at A01:69703261..69703548+ >GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=CDS; length=288bp; location=Sequence derived from: A01:69703261..69703548+ (Gossypium hirsutumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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