GH_A01G01575_HPF.1

Transcript Overview
NameGH_A01G01575_HPF.1
Unique NameGH_A01G01575_HPF.1_ZJU-HPF17
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length288
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:69703261..69703548 +Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
adbhpfL0002Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
barhpfL0000Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adyhpfL0000Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
barhpfL0691Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhpfL0701Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhpfL0706Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbhpfL0689Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhpfL0697Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhpfL0702Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adyhpfL0714Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhpfL0726Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhpfL0732Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
awhpfL0002Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhpfL0007Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
d8ihpfL0428Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ihpfL0438Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d9ihpfL0441Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9ihpfL0452Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d3khpfL0640Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
d3khpfL0649Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
dfihpfL0510Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfihpfL0520Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfihpfL0524Gossypium aridum (D4) genome ISU_v1Gossypium aridum
ghzhpfL0000Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthpfL0000Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhpfL0743Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhpfL0753Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthpfL0739Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthpfL0748Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtthpfL0101Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtthpfL0110Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
doohpfL0465Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doohpfL0472Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doohpfL0477Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
dqihpfL0713Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqihpfL0717Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqihpfL0724Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dsihpfL0975Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihpfL0978Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
hpfhpfR0025Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhpfR0035Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hnhpfL0000Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnhpfL0727Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnhpfL0741Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hpfhwR0004Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hpfhzR0000Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hpfpscR0002Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hpfjmbR0000Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hpfndmR0000Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hpfhzR0022Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hpfpscR0023Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hpfpscR0033Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hpfhzR0034Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hpfjmbR0025Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hpfjmbR0037Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hpfndmR0020Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hpfndmR0030Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hpftoR0000Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hpftoR0019Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hpftoR0030Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
fnhpfL0007Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhpfL0009Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhpfL0011Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
hpftwR0003Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hpftwR0030Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hpftwR0040Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbhpfL1870Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
ganhpfL0007Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
ganhpfL0013Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
ganhpfL0022Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
gauhpfL0005Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gkhpfL0002Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gkhpfL0007Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gkhpfL0012Gossypioides kirkii genome ISU_v3Gossypioides kirkii
grbhpfL0002Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
goshpfL0003Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grbhpfL0017Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
goshpfL0021Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii

Orthologs
Gene/TranscriptAssemblySpecies
Gar01G18380Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
mikado.F01G4708.1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Ghe01G17600Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GhM_A01G1700.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
A01G17150.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GH_A01G1492Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Ghi_A01G07506Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GH_A01G01575_HPFGH_A01G01575_HPF_ZJU-HPF17Gossypium hirsutumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
GH_A01G01575_HPF.1.exon1GH_A01G01575_HPF.1.exon1_ZJU-HPF17Gossypium hirsutumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.GH_A01G01575_HPF.1cds.GH_A01G01575_HPF.1_ZJU-HPF17Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
GH_A01G01575_HPF.1_ZJU-HPF17GH_A01G01575_HPF.1_ZJU-HPF17Gossypium hirsutumpolypeptide
GH_A01G01575_HPF.1_ZJU-HPF17GH_A01G01575_HPF.1_ZJU-HPF17-proteinGossypium hirsutumpolypeptide


Homology
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A8J5Z5T7_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_001382 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.241e-46
Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            MGS MRWED++V     +IVKKCK K +    +  +IHNIKQVTGRFRTVRFTYVPQTANGLAHT AKEALRRRE SYLVRKVPVYVERALEVDWEREPD
Sbjct:   57 MGSEMRWEDIIVEADSLSIVKKCKQKSRTNR-LSEHIHNIKQVTGRFRTVRFTYVPQTANGLAHTIAKEALRRRELSYLVRKVPVYVERALEVDWEREPD 155          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9LJR9_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002846 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.889e-24
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    5 MRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            M+W  +++     AI+KKCKAK QD+S +G YIH+I+Q T R R + F Y P+  N LAH  A E L+++E  YLV+ +P Y E   E DW REPD
Sbjct:    1 MQWLQIIIEGNSLAIIKKCKAKSQDRSQVGVYIHDIQQGTTRSRNIVFKYTPRLTNALAHMLATEFLKKKEEVYLVKSIPGYAENHKETDWVREPD 96          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8MW76_9ROSI (RNase H type-1 domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_006372 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.166e-23
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0
Query:   11 LVAIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            L+ I+KKC+ K QD+S +GAYIH+I+Q+T  F  + F Y P++ANGLAH  A + L+  E  YL++ VP Y E+    DW REPD
Sbjct:   66 LLGIIKKCQLKSQDRSQVGAYIHDIQQITDGFNNIVFKYTPRSANGLAHILATKYLKNCEEFYLLKNVPGYAEKQKNADWMREPD 150          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8N2G9_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_004758 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.323e-22
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 0
Query:   14 IVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            I+KKC+ +  DKS IGA++H+I+Q+   F+++ F +  ++ NGLAH  A E L+R E  Y+V  VPVY ER +E +WEREPD
Sbjct:    1 IIKKCQTQNPDKSQIGAHVHDIQQLKDSFQSIVFNHTLRSTNGLAHILATETLKRSETVYMVGGVPVYTERVVEAEWEREPD 82          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9D756_GOSGO (RNase H type-1 domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020650 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.436e-22
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            +G  M+WE++++     +I+KKC+ K  DKS+IGAYIH+I+Q++ + +   F Y+P+TAN LAH+   E ++  +  YL+ KVP Y E+  E D  REPD
Sbjct:  163 LGIDMKWENIIIEGDSLSIIKKCRTKSHDKSLIGAYIHDIQQISLKTQKCSFEYIPRTANCLAHSIVTETMKSNKEVYLIGKVPEYAEKLNERDSVREPD 262          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9MG24_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002656 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.845e-21
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 0
Query:    7 WEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            W +V+V     AI+KKC+ +  DKS IGA++H+I+Q+   F+++ F +  ++ NGLAH    E L+R E  Y+V  VPVY  + +E +WEREPD
Sbjct:    2 WSEVIVEGDSLAIIKKCQTQNPDKSQIGAHVHDIQQLKDSFQSIVFNHTLRSTNGLAHILETETLKRSETVYMVGGVPVYTAQVVEAEWEREPD 95          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A8J6CUY1_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_018891 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.031e-21
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:    1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            +G  M+ +++++     +I+KKC  K  DKS IGAYIH+I Q+  +   ++F Y P++ NGLAH  AKE+LRR+E  Y V  VP+Y E   + D EREPD
Sbjct:  168 IGLDMQGKEIIIEGYSLSIIKKCNVKGGDKSKIGAYIHDIHQLKSKSSNLKFEYTPRSGNGLAHILAKESLRRKEEFYPVESVPIYAENRGKNDIEREPD 267          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J8NJT4_9ROSI (RNase H type-1 domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_024070 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.320e-20
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   12 VAIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            +AI+KKC+ K QD+S +G YIH+I+Q+T RF  + F Y  ++ NGLAH  A E+L++ E  Y+++ VP Y E+  + DW RE D
Sbjct:   67 LAIIKKCQLKSQDRSQVGVYIHDIQQITARFNNIVFKYTLRSTNGLAHILAIESLKKSEEFYMLKNVPGYAEKQKKADWMRELD 150          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A9D3UQ47_9ROSI (RNase H type-1 domain-containing protein OS=Gossypium stocksii OX=47602 GN=J1N35_033291 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.990e-20
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    5 MRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            M+W+ ++      +I+KKCK K  DKS++GAYIH+I+Q+  ++R  RF Y+P+ AN LAH  A E L+ ++  YLV  VP   E+  E +  REPD
Sbjct:    1 MQWQKIIFEGDSSSIIKKCKVKSPDKSLVGAYIHDIQQLLLKYRNCRFEYIPRIANSLAHILATETLKNKKEIYLVGSVPESAEKQEERNRVREPD 96          
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Match: A0A7J9N9W3_GOSSC (RNase H type-1 domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_003809 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.830e-20
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    1 MGSAMRWEDVLV-----AIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYVPQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD 95
            MG  M W +V V     AI+KKC+    +KS IGA+I +I+Q+   F+++ F + P+ ANGLAH  A E  ++ +  YLV   PVY ER + V+W REPD
Sbjct:   65 MGLEMGWSEVTVEGDSLAIIKKCQTHNPNKSQIGAHIQDIQQLKDSFQSIVFKHTPRLANGLAHILAIETQKKSKTDYLVGGAPVYAERVMVVEWVREPD 164          
The following BLAST results are available for this feature:
BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8J5Z5T7_9ROSI2.241e-4678.00RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J9LJR9_GOSSC2.889e-2447.92RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J8MW76_9ROSI5.166e-2349.41RNase H type-1 domain-containing protein (Fragment... [more]
A0A7J8N2G9_9ROSI1.323e-2248.78RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J9D756_GOSGO8.436e-2243.00RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J9MG24_GOSSC1.845e-2143.62RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A8J6CUY1_9ROSI9.031e-2145.00RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J8NJT4_9ROSI1.320e-2046.43RNase H type-1 domain-containing protein (Fragment... [more]
A0A9D3UQ47_9ROSI1.990e-2043.75RNase H type-1 domain-containing protein OS=Gossyp... [more]
A0A7J9N9W3_GOSSC2.830e-2044.00RNase H type-1 domain-containing protein OS=Gossyp... [more]
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BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs UniProt Swissprot )
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GH_A01G01575_HPF.1 vs. ExPASy TrEMBL
Analysis Date: 2024-04-30 (BLASTP of ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for ZJU v1.0 G. hirsutum (AD1) 'HPF17' proteins
Date Performed: 2024-04-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 14..65
e-value: 0.43
score: 21.9

Sequences
The following sequences are available for this feature:

mRNA sequence

>GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=mRNA; length=288bp
ATGGGGTCAGCAATGAGGTGGGAAGATGTTCTTGTGGCTATAGTTAAGAA
ATGTAAAGCAAAAATCCAGGACAAATCGGTTATCGGAGCATATATCCACA
ACATTAAGCAAGTCACAGGCAGATTTCGAACAGTTAGATTCACGTATGTG
CCTCAAACGGCTAATGGTTTAGCACACACAAACGCAAAAGAGGCGTTAAG
AAGAAGGGAATGGTCTTACCTGGTGCGCAAGGTTCCGGTATATGTTGAAC
GAGCGCTGGAAGTTGATTGGGAGAGGGAACCGGATTGA
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protein sequence of GH_A01G01575_HPF.1_ZJU-HPF17

>GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1_ZJU-HPF17; organism=Gossypium hirsutum; type=polypeptide; length=95bp
MGSAMRWEDVLVAIVKKCKAKIQDKSVIGAYIHNIKQVTGRFRTVRFTYV
PQTANGLAHTNAKEALRRREWSYLVRKVPVYVERALEVDWEREPD
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mRNA from alignment at A01:69703261..69703548+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=mRNA; length=288bp; location=Sequence derived from: A01:69703261..69703548+ (Gossypium hirsutum
ATGGGGTCAGCAATGAGGTGGGAAGATGTTCTTGTGGCTATAGTTAAGAA ATGTAAAGCAAAAATCCAGGACAAATCGGTTATCGGAGCATATATCCACA ACATTAAGCAAGTCACAGGCAGATTTCGAACAGTTAGATTCACGTATGTG CCTCAAACGGCTAATGGTTTAGCACACACAAACGCAAAAGAGGCGTTAAG AAGAAGGGAATGGTCTTACCTGGTGCGCAAGGTTCCGGTATATGTTGAAC GAGCGCTGGAAGTTGATTGGGAGAGGGAACCGGATTGA
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Coding sequence (CDS) from alignment at A01:69703261..69703548+

>GH_A01G01575_HPF.1_ZJU-HPF17 ID=GH_A01G01575_HPF.1_ZJU-HPF17; Name=GH_A01G01575_HPF.1; organism=Gossypium hirsutum; type=CDS; length=288bp; location=Sequence derived from: A01:69703261..69703548+ (Gossypium hirsutum
ATGGGGTCAGCAATGAGGTGGGAAGATGTTCTTGTGGCTATAGTTAAGAA
ATGTAAAGCAAAAATCCAGGACAAATCGGTTATCGGAGCATATATCCACA
ACATTAAGCAAGTCACAGGCAGATTTCGAACAGTTAGATTCACGTATGTG
CCTCAAACGGCTAATGGTTTAGCACACACAAACGCAAAAGAGGCGTTAAG
AAGAAGGGAATGGTCTTACCTGGTGCGCAAGGTTCCGGTATATGTTGAAC
GAGCGCTGGAAGTTGATTGGGAGAGGGAACCGGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity