g.barbadense_cottongen_reftransV1_0098081, g.barbadense_cottongen_reftransV1_0098081 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4) HSP 1 Score: 124.79 bits (312), Expect = 3.253e-29 Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 2 Query: 47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 T+ S++Q YGVP Y A W+P ++SK+ + ED E + ++ + +VL+GGGGEGRSGI N I++ V+ +NSLS+QP+ + GSDLPYRM VHP G+ICA SC+LF W++ E ++ G SE+V+ +L DVGQQLAL FN EGSVLA G E Sbjct: 8 TNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSS-------SSSRSCIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAG--ESEEVIKELRDVGQQLALAFNPEGSVLAAGAE 173 HSP 2 Score: 92.4337 bits (228), Expect = 1.085e-18 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAK 1730 A +DG+LRVFKWPSM +LNE+QAHSSVK L FS G+FLVSLG +CR+WDV +S VASL+K Sbjct: 170 AGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGGPVCRVWDVNASAAVASLSK 234
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 7.581e-7 Identity = 22/62 (35.48%), Postives = 41/62 (66.13%), Query Frame = 3 Query: 1548 DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAK 1730 DG LR+ +WP++ ++L+E +AH S++++DFS D +FL + + G RIW +++L + Sbjct: 143 DGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLER 204
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0D2PPU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G109900 PE=4 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 8.284e-97 Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 2 Query: 44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 MTDTSSDLQKYGVPFYGAGW+PYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE Sbjct: 1 MTDTSSDLQKYGVPFYGAGWIPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 176 HSP 2 Score: 132.494 bits (332), Expect = 7.574e-30 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 +DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN Sbjct: 176 EDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239 HSP 3 Score: 92.8189 bits (229), Expect = 7.118e-17 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR Sbjct: 240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0D2QNQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G109900 PE=4 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 2.975e-95 Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 2 Query: 44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG 565 MTDTSSDLQKYGVPFYGAGW+PYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG Sbjct: 1 MTDTSSDLQKYGVPFYGAGWIPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG 174 HSP 2 Score: 135.191 bits (339), Expect = 8.445e-31 Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 3 Query: 1539 AVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 VQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN Sbjct: 174 GVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239 HSP 3 Score: 92.8189 bits (229), Expect = 6.925e-17 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR Sbjct: 240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0B0NK76_GOSAR (SEC12-like protein 2 OS=Gossypium arboreum GN=F383_14520 PE=4 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 9.502e-95 Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 2 Query: 44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 MT+TSSDLQKYGVPFYGAGWVPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKES GNE HKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE Sbjct: 1 MTETSSDLQKYGVPFYGAGWVPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESNGNEAHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 176 HSP 2 Score: 132.109 bits (331), Expect = 8.637e-30 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 +DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN Sbjct: 176 EDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239 HSP 3 Score: 92.8189 bits (229), Expect = 6.800e-17 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR Sbjct: 240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A061E7J2_THECC (Transducin/WD40 repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_010880 PE=4 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.162e-68 Identity = 135/169 (79.88%), Postives = 147/169 (86.98%), Query Frame = 2 Query: 65 LQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 LQKYGVPFYGAGWVPY+HI+SKLASQEK EE++ +E PT S DDEI+T NYVV +GGGGEGRSGIPNAIVVSHV+F SNSLS+QPV K T SDLPYRMTVHP GDGIICA QQSCRLFEW+E + NEV LGVKVSEKVL QLEDVGQQLAL FNSEGS+LAVGGE Sbjct: 13 LQKYGVPFYGAGWVPYDHIRSKLASQEKNEENEDKE--PTQSKDDEISTSQNYVVFSGGGGEGRSGIPNAIVVSHVDFASNSLSEQPVFKLGTDSDLPYRMTVHPRGDGIICALQQSCRLFEWEEPQDNEVQNLGVKVSEKVLTQLEDVGQQLALRFNSEGSILAVGGE 179 HSP 2 Score: 125.946 bits (315), Expect = 1.038e-27 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 +DGSLRVFKWPSM+I+LNEAQAHSSVK+LDFSCDGKFLVSLGSGLCRIWDV SSKVVASLAKGN Sbjct: 179 EDGSLRVFKWPSMEIILNEAQAHSSVKDLDFSCDGKFLVSLGSGLCRIWDVESSKVVASLAKGN 242 HSP 3 Score: 79.7221 bits (195), Expect = 1.505e-12 Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 3 Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DEVFAFCRFS+INDK+P LYIAAVTD+GG++LT+NTTTWKR Sbjct: 243 DEVFAFCRFSKINDKDPVLYIAAVTDHGGNVLTWNTTTWKR 283
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4UGR1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.067e-51 Identity = 105/181 (58.01%), Postives = 129/181 (71.27%), Query Frame = 2 Query: 47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 + S +LQKYGVP YGAGWVPY+ + K ++D +E+D S D+ + + YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV + T SDLPYRM +HPHGDGIICA Q SCRLFEW E E E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E Sbjct: 7 NEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 HSP 2 Score: 92.0485 bits (227), Expect = 4.472e-17 Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGNVS 1742 A ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G R+WD+ SS V LAK NVS Sbjct: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKENVS 253
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4U6B4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 3.954e-51 Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2 Query: 50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 + S +LQKYGVP YGAGWVPY+ + K ++D +E+D S D+ + + YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV + T SDLPYRM +HPHGDGIICA Q SCRLFEW E E E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E Sbjct: 8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 HSP 2 Score: 88.9669 bits (219), Expect = 6.695e-16 Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736 A ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G R+WD+ SS V LAK N Sbjct: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKEN 251 HSP 3 Score: 62.7734 bits (151), Expect = 3.188e-7 Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DE+FA CRFS +N+++ LYIAA+TD G SI+T+NTTTWKR Sbjct: 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A067FMK1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015490mg PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.358e-50 Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2 Query: 50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 + S +LQKYGVP YGAGWVPY+ + K ++D +E+D S D+ + + YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV + T SDLPYRM +HPHGDGIICA Q SCRLFEW E E E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E Sbjct: 8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 HSP 2 Score: 88.9669 bits (219), Expect = 1.485e-15 Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736 A ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G R+WD+ SS V LAK N Sbjct: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN 251 HSP 3 Score: 63.1586 bits (152), Expect = 3.152e-7 Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DE+FA CRFS +N+++ LYIAA+TD G SI+T+NTTTWKR Sbjct: 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4TLY2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.384e-50 Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2 Query: 50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 + S +LQKYGVP YGAGWVPY+ + K ++D +E+D S D+ + + YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV + T SDLPYRM +HPHGDGIICA Q SCRLFEW E E E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E Sbjct: 8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187 HSP 2 Score: 89.3521 bits (220), Expect = 1.307e-15 Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736 A ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G R+WD+ SS V LAK N Sbjct: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKEN 251 HSP 3 Score: 63.1586 bits (152), Expect = 3.322e-7 Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 DE+FA CRFS +N+++ LYIAA+TD G SI+T+NTTTWKR Sbjct: 251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: B9SJ58_RICCO (Prolactin regulatory element-binding protein, putative OS=Ricinus communis GN=RCOM_0843720 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.228e-49 Identity = 107/172 (62.21%), Postives = 117/172 (68.02%), Query Frame = 2 Query: 56 SSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 S QKYGVPFY A WVPY ++SKL S ND E YV+LAGGGGEGRSGIPNA+V+S +FT NSLS QPV K TGSDLPYRM VHP GDG++CA SCR FEW E + NE HKLG+K SEK L QLEDVGQQLAL FNSE S LAVGGE Sbjct: 9 SLSFQKYGVPFYSAAWVPYKLVRSKLQSSHSDH-----------ENDHEEIADQYYVLLAGGGGEGRSGIPNALVLSRFDFTFNSLSPQPVAKLGTGSDLPYRMVVHPGGDGLVCALPNSCRFFEWDEVKDNEAHKLGLKESEKALTQLEDVGQQLALAFNSESSALAVGGE 169 HSP 2 Score: 91.2781 bits (225), Expect = 2.010e-16 Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736 +DG LRVFKWPSM+I LNEA+AH S+K+L FS DGKFLVSLG G R+WDVTSS VASL+K N Sbjct: 169 EDGRLRVFKWPSMEIFLNEAEAHPSLKDLCFSPDGKFLVSLGGRGPGRVWDVTSSTAVASLSKEN 233
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: B9HW60_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12200g PE=4 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 7.765e-47 Identity = 104/177 (58.76%), Postives = 131/177 (74.01%), Query Frame = 2 Query: 65 LQKYGVPFYGAGWVPYNHIKSKL--------ASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 LQKYGVP Y A W+PY ++SKL +S+++ ++ ++EE+ P PS ++ +YVVLAGGGGEG SGIPNA+++S +F+SNSL+ QPV K GS LPYRM VHP GDG+ICAF SCR F+W E + NE HKLG+K S+KVL QLEDVGQQLAL FNS+ SVLAVGGE Sbjct: 12 LQKYGVPLYSAAWLPYKELRSKLQPRDDHVDSSKQQEQQQEEEEEIPKPS----ASSHEHYVVLAGGGGEGSSGIPNAVLLSCFDFSSNSLASQPVAKLGLGSQLPYRMVVHPGGDGVICAFPSSCRFFDWDEVKDNEDHKLGLKPSKKVLTQLEDVGQQLALAFNSDSSVLAVGGE 184 HSP 2 Score: 90.8929 bits (224), Expect = 3.076e-16 Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736 +DG+LRVFKWP M+I+LNE QAH+S+K+L FS DGKFLVS+G L R+WDVTSS VASL K N Sbjct: 184 EDGNLRVFKWPGMEIILNETQAHASLKDLCFSPDGKFLVSMGQRDLGRVWDVTSSTAVASLPKEN 248 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098081 ID=g.barbadense_cottongen_reftransV1_0098081; Name=g.barbadense_cottongen_reftransV1_0098081; organism=Gossypium barbadense; type=contig; length=2176bpback to top |