g.barbadense_cottongen_reftransV1_0098081, g.barbadense_cottongen_reftransV1_0098081 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4) HSP 1 Score: 124.79 bits (312), Expect = 3.253e-29 Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 2 Query: 47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 T+ S++Q YGVP Y A W+P ++SK+ + ED E + ++ + +VL+GGGGEGRSGI N I++ V+ +NSLS+QP+ + GSDLPYRM VHP G+ICA SC+LF W++ E ++ G SE+V+ +L DVGQQLAL FN EGSVLA G E Sbjct: 8 TNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSS-------SSSRSCIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAG--ESEEVIKELRDVGQQLALAFNPEGSVLAAGAE 173 HSP 2 Score: 92.4337 bits (228), Expect = 1.085e-18 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAK 1730 A +DG+LRVFKWPSM +LNE+QAHSSVK L FS G+FLVSLG +CR+WDV +S VASL+K Sbjct: 170 AGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGGPVCRVWDVNASAAVASLSK 234
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 7.581e-7 Identity = 22/62 (35.48%), Postives = 41/62 (66.13%), Query Frame = 3 Query: 1548 DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAK 1730 DG LR+ +WP++ ++L+E +AH S++++DFS D +FL + + G RIW +++L + Sbjct: 143 DGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLER 204
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V7CLI5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G095100g PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 4.007e-39 Identity = 88/182 (48.35%), Postives = 121/182 (66.48%), Query Frame = 2 Query: 62 DLQKYGVPFYGAGWVPYNHIKSKL---------ASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQ--QSCRLFEWK-ESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 +L+KYGVPFY W+P N IKS+ + + E + PT + + + NYV+ AGGGG GRSGIPNA+V++H + SNSLS +PV K T S+LPYRM + GDG+ICA + + CR F+W +++ +E+HKL +K+S+KVL QLEDVGQQLAL FN++G+ LA GGE Sbjct: 11 NLKKYGVPFYSVAWIPQNLIKSRQIETADDSNDSDHNSASSTEPESEPPTKAELEPSSIAGNYVLFAGGGGAGRSGIPNALVIAHFDIESNSLSSEPVCKLGTDSELPYRMALQSQGDGLICAMETPKVCRWFDWDHQNKSSEIHKLSLKLSDKVLTQLEDVGQQLALAFNNDGTALAAGGE 192 HSP 2 Score: 82.8037 bits (203), Expect = 1.579e-13 Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWD 1694 A +DG+LRVFKWPSM+++L+E+ AHSSVK+L FS DGKFL SLGS G CR+WD Sbjct: 189 AGGEDGNLRVFKWPSMEVILDESNAHSSVKDLHFSSDGKFLASLGSGGPCRVWD 242 HSP 3 Score: 63.5438 bits (153), Expect = 2.534e-7 Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 Query: 2055 EVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174 E F+ CRFSQ NDK LYIAA+TD GGSILT+NT TW+R Sbjct: 258 ETFSSCRFSQTNDKTQVLYIAAMTDKGGSILTWNTQTWER 297
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: K4CF01_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g047970.2 PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 4.582e-39 Identity = 94/176 (53.41%), Postives = 117/176 (66.48%), Query Frame = 2 Query: 68 QKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEI--------TTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 + YGVP YGAGWVP + ++S + PS DDE + P NYVVLAGGGGEG SGI NA++V+ +F SN LSD+PV + TG DLPYRM VHP G+G+IC+ +SCR F+W + + +E LG++ SEKVL LEDVGQQLALTFN EGS+LAVGGE Sbjct: 8 KNYGVPIYGAGWVPPSALRSAV----------------EPSVDDEKDDGDKSSSSAPGNYVVLAGGGGEGNSGIRNALIVAQFDFDSNVLSDEPVARLGTGGDLPYRMAVHPGGEGLICSLPKSCRWFDW-DFQTDENRSLGLRSSEKVLEPLEDVGQQLALTFNDEGSLLAVGGE 166 HSP 2 Score: 93.9745 bits (232), Expect = 3.151e-17 Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 +DG LRVFKWP M+ +L++A AH+SVK+LDFS DGKFL S+GSG CRIWDV+ S VASL K N Sbjct: 166 EDGKLRVFKWPRMENILDQANAHASVKDLDFSPDGKFLASVGSGPCRIWDVSKSTSVASLTKEN 229
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: M1A6I5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006156 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.184e-38 Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 2 Query: 44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEI--------TTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 M D S++ + YGVP YGAGWVP N ++S + PS DDE + P NYVVL+GGGGEG GI NA++V+ ++ SN LSD+PV + TG DLPYRM VHP G+G+IC+ +SCR F+W + + E LG++ SEKVL LEDVGQQLALTFN+EGS+LAVGGE Sbjct: 1 MAD-SANSKNYGVPIYGAGWVPPNALRSAV----------------EPSADDEKDDGDKSSPSAPGNYVVLSGGGGEGNIGIRNALIVAQFDYDSNVLSDEPVARLGTGGDLPYRMAVHPGGEGLICSLPKSCRWFDW-DFQTTENRSLGLRSSEKVLEPLEDVGQQLALTFNNEGSLLAVGGE 166 HSP 2 Score: 93.2041 bits (230), Expect = 5.861e-17 Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736 +DG L VFKWPSM+ +L++A AH+SVK+LDFS DGKFL S+GSG CRIWDV+ S VASL K N Sbjct: 166 EDGKLTVFKWPSMENILDQANAHASVKDLDFSPDGKFLASVGSGPCRIWDVSKSTSVASLTKEN 229
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: M5XDL8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006854mg PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.508e-38 Identity = 98/171 (57.31%), Postives = 118/171 (69.01%), Query Frame = 2 Query: 59 SDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 S+ QKYGVPFY A W P K +++ ++D + PT + + N+VVLAGGGGEGRSG+PNAI+V+ + S SLS QPV K +TGSDLPYRM VHP GDG+IC+F SCR FEW E G E KLG+K S++VL QL DVGQQLAL FN EGSVLA GGE Sbjct: 7 SNYQKYGVPFYVAAWAPDVR---KSQPRDQDDDDDHQSTAPTETESAQSHPNQNHVVLAGGGGEGRSGVPNAILVAQFDPASVSLSHQPVAKLDTGSDLPYRMAVHPGGDGLICSFPNSCRWFEWDEESG-EDPKLGLKQSDRVLDQLVDVGQQLALAFNKEGSVLAAGGE 173 HSP 2 Score: 95.1301 bits (235), Expect = 1.304e-17 Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3 Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLA 1727 A +DG LRVFKWPSM+I+LNEA AH++VK LDFS DGKFLVSLGS G R+WD+TSS V ASL Sbjct: 170 AGGEDGKLRVFKWPSMEIILNEAPAHTTVKQLDFSPDGKFLVSLGSRGPGRVWDITSSTVAASLP 234
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0A0KMF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286090 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 5.188e-38 Identity = 89/181 (49.17%), Postives = 118/181 (65.19%), Query Frame = 2 Query: 59 SDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN----------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571 S+ +KYGVPFY A W+P ++SK + + + P S D +I++ N YV AGGGGEGRSGI NA++++H +F S SLSD PV K+ TGSDLPYRM +HP GDGIIC+ +SC LF+ + LG+K+S++VL LEDVGQQL+L FN+EGS+LA GGE Sbjct: 7 SNSRKYGVPFYAAAWLPSASLQSK-------HQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDHPVAKYGTGSDLPYRMAIHPAGDGIICSLPKSCSLFKVDTEKDAGDETLGLKLSQEVLSPLEDVGQQLSLAFNNEGSLLATGGE 180 HSP 2 Score: 98.5969 bits (244), Expect = 2.345e-19 Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 3 Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGNVSE 1745 +DG+LRV KWPS+ IVLNE +HSSVK+LDFS DGK+LVSLG G CR+WD+TSS +V SL K NVS+ Sbjct: 180 EDGNLRVLKWPSLDIVLNEPSSHSSVKDLDFSPDGKYLVSLG-GPCRVWDITSSTLVTSLPKENVSK 245 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098081 ID=g.barbadense_cottongen_reftransV1_0098081; Name=g.barbadense_cottongen_reftransV1_0098081; organism=Gossypium barbadense; type=contig; length=2176bpback to top |