g.barbadense_cottongen_reftransV1_0098081, g.barbadense_cottongen_reftransV1_0098081 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0098081
Unique Nameg.barbadense_cottongen_reftransV1_0098081
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt07chromosomeg.barbadense_cottongen_reftransV1_0098081:2..2176 .
Dt07:14831940..14836732 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 3.253e-29
Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 2
Query:   47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            T+  S++Q YGVP Y A W+P   ++SK+    +  ED  E    +       ++  + +VL+GGGGEGRSGI N I++  V+  +NSLS+QP+ +   GSDLPYRM VHP   G+ICA   SC+LF W++    E ++ G   SE+V+ +L DVGQQLAL FN EGSVLA G E
Sbjct:    8 TNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSS-------SSSRSCIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAG--ESEEVIKELRDVGQQLALAFNPEGSVLAAGAE 173          

HSP 2 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 3
Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAK 1730
            A  +DG+LRVFKWPSM  +LNE+QAHSSVK L FS  G+FLVSLG  +CR+WDV +S  VASL+K
Sbjct:  170 AGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGGPVCRVWDVNASAAVASLSK 234          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.581e-7
Identity = 22/62 (35.48%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 1548 DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAK 1730
            DG LR+ +WP++ ++L+E +AH S++++DFS D +FL +  + G  RIW       +++L +
Sbjct:  143 DGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLER 204          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V7CLI5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G095100g PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.007e-39
Identity = 88/182 (48.35%), Postives = 121/182 (66.48%), Query Frame = 2
Query:   62 DLQKYGVPFYGAGWVPYNHIKSKL---------ASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQ--QSCRLFEWK-ESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            +L+KYGVPFY   W+P N IKS+          +        + E + PT +  +  +   NYV+ AGGGG GRSGIPNA+V++H +  SNSLS +PV K  T S+LPYRM +   GDG+ICA +  + CR F+W  +++ +E+HKL +K+S+KVL QLEDVGQQLAL FN++G+ LA GGE
Sbjct:   11 NLKKYGVPFYSVAWIPQNLIKSRQIETADDSNDSDHNSASSTEPESEPPTKAELEPSSIAGNYVLFAGGGGAGRSGIPNALVIAHFDIESNSLSSEPVCKLGTDSELPYRMALQSQGDGLICAMETPKVCRWFDWDHQNKSSEIHKLSLKLSDKVLTQLEDVGQQLALAFNNDGTALAAGGE 192          

HSP 2 Score: 82.8037 bits (203), Expect = 1.579e-13
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 3
Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWD 1694
            A  +DG+LRVFKWPSM+++L+E+ AHSSVK+L FS DGKFL SLGS G CR+WD
Sbjct:  189 AGGEDGNLRVFKWPSMEVILDESNAHSSVKDLHFSSDGKFLASLGSGGPCRVWD 242          

HSP 3 Score: 63.5438 bits (153), Expect = 2.534e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3
Query: 2055 EVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
            E F+ CRFSQ NDK   LYIAA+TD GGSILT+NT TW+R
Sbjct:  258 ETFSSCRFSQTNDKTQVLYIAAMTDKGGSILTWNTQTWER 297          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: K4CF01_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g047970.2 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.582e-39
Identity = 94/176 (53.41%), Postives = 117/176 (66.48%), Query Frame = 2
Query:   68 QKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEI--------TTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            + YGVP YGAGWVP + ++S +                 PS DDE         + P NYVVLAGGGGEG SGI NA++V+  +F SN LSD+PV +  TG DLPYRM VHP G+G+IC+  +SCR F+W + + +E   LG++ SEKVL  LEDVGQQLALTFN EGS+LAVGGE
Sbjct:    8 KNYGVPIYGAGWVPPSALRSAV----------------EPSVDDEKDDGDKSSSSAPGNYVVLAGGGGEGNSGIRNALIVAQFDFDSNVLSDEPVARLGTGGDLPYRMAVHPGGEGLICSLPKSCRWFDW-DFQTDENRSLGLRSSEKVLEPLEDVGQQLALTFNDEGSLLAVGGE 166          

HSP 2 Score: 93.9745 bits (232), Expect = 3.151e-17
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
            +DG LRVFKWP M+ +L++A AH+SVK+LDFS DGKFL S+GSG CRIWDV+ S  VASL K N
Sbjct:  166 EDGKLRVFKWPRMENILDQANAHASVKDLDFSPDGKFLASVGSGPCRIWDVSKSTSVASLTKEN 229          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: M1A6I5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006156 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.184e-38
Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 2
Query:   44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEI--------TTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            M D S++ + YGVP YGAGWVP N ++S +                 PS DDE         + P NYVVL+GGGGEG  GI NA++V+  ++ SN LSD+PV +  TG DLPYRM VHP G+G+IC+  +SCR F+W + +  E   LG++ SEKVL  LEDVGQQLALTFN+EGS+LAVGGE
Sbjct:    1 MAD-SANSKNYGVPIYGAGWVPPNALRSAV----------------EPSADDEKDDGDKSSPSAPGNYVVLSGGGGEGNIGIRNALIVAQFDYDSNVLSDEPVARLGTGGDLPYRMAVHPGGEGLICSLPKSCRWFDW-DFQTTENRSLGLRSSEKVLEPLEDVGQQLALTFNNEGSLLAVGGE 166          

HSP 2 Score: 93.2041 bits (230), Expect = 5.861e-17
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
            +DG L VFKWPSM+ +L++A AH+SVK+LDFS DGKFL S+GSG CRIWDV+ S  VASL K N
Sbjct:  166 EDGKLTVFKWPSMENILDQANAHASVKDLDFSPDGKFLASVGSGPCRIWDVSKSTSVASLTKEN 229          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: M5XDL8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006854mg PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.508e-38
Identity = 98/171 (57.31%), Postives = 118/171 (69.01%), Query Frame = 2
Query:   59 SDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            S+ QKYGVPFY A W P      K   +++ ++D  +   PT +   +     N+VVLAGGGGEGRSG+PNAI+V+  +  S SLS QPV K +TGSDLPYRM VHP GDG+IC+F  SCR FEW E  G E  KLG+K S++VL QL DVGQQLAL FN EGSVLA GGE
Sbjct:    7 SNYQKYGVPFYVAAWAPDVR---KSQPRDQDDDDDHQSTAPTETESAQSHPNQNHVVLAGGGGEGRSGVPNAILVAQFDPASVSLSHQPVAKLDTGSDLPYRMAVHPGGDGLICSFPNSCRWFEWDEESG-EDPKLGLKQSDRVLDQLVDVGQQLALAFNKEGSVLAAGGE 173          

HSP 2 Score: 95.1301 bits (235), Expect = 1.304e-17
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3
Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLA 1727
            A  +DG LRVFKWPSM+I+LNEA AH++VK LDFS DGKFLVSLGS G  R+WD+TSS V ASL 
Sbjct:  170 AGGEDGKLRVFKWPSMEIILNEAPAHTTVKQLDFSPDGKFLVSLGSRGPGRVWDITSSTVAASLP 234          
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0A0KMF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286090 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.188e-38
Identity = 89/181 (49.17%), Postives = 118/181 (65.19%), Query Frame = 2
Query:   59 SDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN----------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            S+ +KYGVPFY A W+P   ++SK        +  + +  P  S D +I++  N          YV  AGGGGEGRSGI NA++++H +F S SLSD PV K+ TGSDLPYRM +HP GDGIIC+  +SC LF+    +      LG+K+S++VL  LEDVGQQL+L FN+EGS+LA GGE
Sbjct:    7 SNSRKYGVPFYAAAWLPSASLQSK-------HQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDHPVAKYGTGSDLPYRMAIHPAGDGIICSLPKSCSLFKVDTEKDAGDETLGLKLSQEVLSPLEDVGQQLSLAFNNEGSLLATGGE 180          

HSP 2 Score: 98.5969 bits (244), Expect = 2.345e-19
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 3
Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGNVSE 1745
            +DG+LRV KWPS+ IVLNE  +HSSVK+LDFS DGK+LVSLG G CR+WD+TSS +V SL K NVS+
Sbjct:  180 EDGNLRVLKWPSLDIVLNEPSSHSSVKDLDFSPDGKYLVSLG-GPCRVWDITSSTLVTSLPKENVSK 245          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH3.253e-2946.29SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH7.581e-735.48SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7CLI5_PHAVU4.007e-3948.35Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
K4CF01_SOLLC4.582e-3953.41Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1A6I5_SOLTU1.184e-3851.63Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M5XDL8_PRUPE1.508e-3857.31Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0A0KMF5_CUCSA5.188e-3849.17Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23284PROLACTIN REGULATORY ELEMENT BINDING PROTEINcoord: 59..176
coord: 1..24

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0098081 ID=g.barbadense_cottongen_reftransV1_0098081; Name=g.barbadense_cottongen_reftransV1_0098081; organism=Gossypium barbadense; type=contig; length=2176bp
GTAAAAGCCTAAATCCTCCTTTGTTCTAACGCAAATTTGAATCATGACAG
ACACCTCCTCCGATCTCCAAAAATACGGCGTGCCGTTTTACGGAGCCGGA
TGGGTTCCTTACAACCACATCAAATCCAAGCTCGCCTCACAAGAAAAGAT
TGAAGAGGATAAGAAAGAAGAAAAAGATCCAACTCCATCCAACGATGACG
AGATCACTACACCCCTAAACTACGTCGTTCTCGCTGGCGGTGGCGGTGAA
GGCCGTAGTGGCATTCCCAATGCAATCGTTGTTTCCCACGTTAATTTCAC
CTCCAATTCTCTCTCCGATCAACCTGTGGTTAAGCATGAAACTGGTTCTG
ATTTGCCTTATCGAATGACTGTTCATCCGCATGGAGATGGCATTATCTGT
GCCTTTCAACAGAGCTGCAGGTTGTTTGAGTGGAAAGAATCTGAGGGAAA
TGAAGTCCACAAACTGGGTGTCAAGGTATCAGAGAAAGTTCTGATCCAGT
TAGAGGATGTTGGGCAACAGTTGGCACTGACATTTAATAGTGAGGGTTCT
GTACTGGCTGTTGGTGGTGAGGTAGAGTGTCCCTCCCATTTTTCAATTTG
TTGGATTAAGTTTGTTGCATTATTCATCACTAACCAAAGGGGGAAAACTA
TTGCACTTGCTATTGCACAAATCATCTGAAAATGATGCAAAAGTCGAGCC
GCACATTTTCCTATAAAATTAAAGAGCATATGCATATTGGCATATGATGA
ATCACATTCGGCAACAGGCAGCCAGGTTATCTTCATGGTTAGGCTTGGGT
TTTGAAAAGATATATTGACACCAGAGCTATTACTTTATGGTATTTTTTTA
TTTCAGTTTTATTTACTAATTATTAGACATATGAGTGGATAGCTAGGATT
ATAACTTATAAGTTATCTCTAGAGATTTAATCTAGGCTATGATTAAATTA
TTATTTGTAAACCCGCTTATAAATAAGCTGTAAAGTAGATTTATGGCCAC
CTTATGATTTTCTTTAATTAATAGACTTTATAAACTAGAGTTTTTTTTTA
TAACCCTACGTTTTTCTAGAGTTCTGACTTCTATCTTACACATTTTCATC
CTTTAGTTCTATTGGTTTGCTGTTCTTTTCTTCCTAAACCACACCATTAT
ATAAGTTTAACTTGACAATGAGGGGCGGGTGGAATAGTGAGAGAAACAAA
GATATTAACGTCACCAGAATGTATGACAATTTATTGACCTTTATTTTGTA
CCCTTTCCAGTAGCGTCCTTGTTTTTCTTTTTGATGCCATGGTGGAAGTG
ATAGATTATACTGGGGATTTCATATTTCAGACTTGCCTACCCATTAAAAG
GCAGATAATAGCAAGTTATAGGATCTTACTTTTTTGTCAACTTTTGGATT
GAAGGGCCAACTGTTTCCATATCTGTCTCTTAGTTTCACTTTCTCAATTC
ACCATTTTGTGCCTAATGCATTATACCTTTCTTTTAAAAGGAAATAAAAA
TTGTGCAGCAATATGCCATATGATGCTCTGATTTTGCTGCAGTACAGGAT
GGCAGTTTAAGGGTTTTCAAGTGGCCTAGCATGAAAATAGTTCTCAACGA
AGCCCAGGCTCATTCTTCTGTTAAGAACTTGGATTTTAGCTGTGATGGAA
AATTTCTTGTCTCACTGGGAAGTGGCCTTTGTAGGATTTGGGATGTAACT
TCGTCAAAAGTTGTTGCTTCTCTGGCAAAGGGAAATGTGAGTGAATGAAT
CAAAGTTTTTTAATAAGTGAAGCTTTTCTTTAGTTATTACGAGTTTTGCC
GCTGTTAGCACTAGGTTTTCTCGCTATTGTCCATATTATTAGCTTTATGT
GCATACCTCTCTGTCTTTGATGTTGTAAAAAGAAGCGTTATGCAACCATC
TAATAATTTAGTGAAATAGCTGAAGCCTTTTTTCAGATTTCTTGCAGACA
TTAAATGATAAGGGAATTTTCAATATTTTCTGATGATTAAAGTTGATGAT
TCCTCTCTGTATTGGGTTACAACTGGTTTATTTTGTTCACATGAACTACA
GGATGAGGTTTTTGCCTTCTGCAGATTTTCTCAAATTAATGATAAGAATC
CACATCTGTATATTGCTGCAGTCACAGACTATGGTGGAAGTATTTTAACA
TATAACACAACCACATGGAAAAGAAT
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