g.barbadense_cottongen_reftransV1_0097479, g.barbadense_cottongen_reftransV1_0097479 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 3.939e-35 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = -1 Query: 523 VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQ------------LGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 894 ++PPE W+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVE+LTAEN LRSE+NQL EKS+KLR NATL++ LK ++ + ++ NKN+ + S +KLHQLLD PR A Sbjct: 247 MVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKLKCSEPEKRVPANMLSRVKNSGAGDKNKNQGDN----DSNSTSKLHQLLDTKPRAKA 378 HSP 2 Score: 76.2554 bits (186), Expect = 2.237e-13 Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = -2 Query: 1914 PTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSH-GGVYAHPAVPIVSL 2150 P DQ N+HVYPDWAAMQAYYGPRV MPPYYNSA+A+ PPP PQ MM PYGAPYA +Y H GGVYAHP +P+ SL Sbjct: 21 PVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAVYPHGGGVYAHPGIPMGSL 100
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 7.041e-35 Identity = 92/176 (52.27%), Postives = 111/176 (63.07%), Query Frame = -1 Query: 523 SSMNAKSSP----TNVPCG------VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQE-NITNKNEDK----------------------EGE--MYEK--KSGAKLHQLLDASPRTDA 939 SS+ K SP N P G +MP + W+ N+R+LKRERRKQSNRESARRSRLRKQAE EELA KV+SLTAEN L++EIN+LT +EKL +N+ L+E +KNAQ + + N NE K EGE +YEK KSGAKLHQLLDA+PRTDA Sbjct: 232 SSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDNAGSGDRDEGESDVYEKTTKSGAKLHQLLDANPRTDA 407 HSP 2 Score: 76.2554 bits (186), Expect = 3.035e-13 Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = -2 Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144 DQ+N HVYPDWAAMQAYYGPRV +PPY+N AVASG +P PYMWGPPQP+MPPYG PYA +Y+HGGVYAHP VP+ + Sbjct: 25 DQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPLAA 100
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.314e-33 Identity = 81/152 (53.29%), Postives = 98/152 (64.47%), Query Frame = -1 Query: 652 SDFSSYLDLCH---DIVDSAEXXXXXXXXXXXXXGLEMVKLRQSLMQLPWQRNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 1092 D S+L C +I D +E + L S+ RNP+S + K+SPTNV +P E W+QNERELKRE+RKQSNRESARRSRLRKQAE EELA +V+SLTAEN TL+SEIN+L E SEKL+LENA L+E LK Sbjct: 111 GDSKSHLRRCQPTGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKASPTNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAALMERLK 262
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.323e-26 Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = -1 Query: 526 PEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKL--HQLLDASPRTD 885 P+ W NE+E+KRE+RKQSNRESARRSRLRKQAETE+L+ KV++L AEN +LRS++ QL +SEKLRLEN +++ LK G T EN+ ++ DK + SG+K HQLL+ASP TD Sbjct: 242 PQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATGKT-ENLISR-VDKNNSV----SGSKTVQHQLLNASPITD 355 HSP 2 Score: 55.8398 bits (133), Expect = 7.203e-7 Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -2 Query: 2037 DQANIHVYP-DWAAMQAYYGPRVTMPPYYNSAVASGH 2144 +Q+N+HVY DWAAMQAYYGPRV +P YYNS +A GH Sbjct: 23 EQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGH 59
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: EMBP1_WHEAT (DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.803e-17 Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = -1 Query: 664 NERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLV 867 +ERELKRERRKQSNRESARRSRLRKQ E EELA+KV LTA N TLRSE++QL + + + EN L+ Sbjct: 247 DERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENKKLM 314
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16 Identity = 43/76 (56.58%), Postives = 63/76 (82.89%), Query Frame = -1 Query: 652 VWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 879 V +++ERELKR++RKQSNRESARRSRLRKQAE E+L ++VESL+ EN +LR E+ +L+ + +KL+ EN ++ + L+ Sbjct: 215 VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQ 290
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.657e-14 Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = -1 Query: 577 VPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNE--DKEGEMYEK 906 VP G E W +ERELK+++RK SNRESARRSRLRKQAE EEL ++ E+L +EN++LR E++++ ++ E+L +N +L L + G + + + NE D G ++K Sbjct: 238 VPSGSARGEQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGGGGGSDAVPDMNERGDTNGGSHQK 347
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.255e-13 Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = -1 Query: 655 SSMNAKSSPTNV--PCGV-----MPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGL 939 S+ +S+P +V P + M P+ + +ERELKR+RRKQSNRESARRSRLRKQA+++EL ++++L+ EN LR + +++E ++ EN ++ E L Sbjct: 162 GSLEVRSNPLDVAAPGAIVVHDGMLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEEL 263
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2R585_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 1.806e-87 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA Sbjct: 177 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 318 HSP 2 Score: 103.605 bits (257), Expect = 1.277e-20 Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ Sbjct: 42 GVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 102
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2PCD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 6.748e-87 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA Sbjct: 221 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 362 HSP 2 Score: 108.227 bits (269), Expect = 5.606e-22 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -2 Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPI + Sbjct: 5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPITA 96 HSP 3 Score: 103.605 bits (257), Expect = 1.931e-20 Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = -3 Query: 1181 FCLLCLACGEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1387 + + G Y V TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ Sbjct: 77 YATIYSHGGVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2MYP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 6.971e-87 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA Sbjct: 220 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 361 HSP 2 Score: 108.227 bits (269), Expect = 5.715e-22 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -2 Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPI + Sbjct: 5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPITA 96 HSP 3 Score: 103.605 bits (257), Expect = 1.935e-20 Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = -3 Query: 1181 FCLLCLACGEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1387 + + G Y V TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ Sbjct: 77 YATIYSHGGVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0B0PXN4_GOSAR (Common plant regulatory factor 1 OS=Gossypium arboreum GN=F383_12115 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.327e-86 Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENIT+KNEDKEGEMYEKKSGAKLHQLLDASPRTDA Sbjct: 220 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITSKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 361 HSP 2 Score: 106.301 bits (264), Expect = 2.568e-21 Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = -2 Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYA IYSHGGVYAHPAVPI + Sbjct: 5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYAAIYSHGGVYAHPAVPITA 96 HSP 3 Score: 105.531 bits (262), Expect = 4.403e-21 Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V TAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ Sbjct: 85 GVYAHPAVPITAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DTT0_THECC (G-box binding factor 3, putative isoform 2 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 7.899e-67 Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948 RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG +E + N ++KEGEMYEK SGAKLHQLLDASPR DA Sbjct: 178 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 321 HSP 2 Score: 85.5001 bits (210), Expect = 8.736e-15 Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V AA VETPTKSSGN+ERG KK+KGFDGLAMSIGNGTAEN EG EPRLSQ Sbjct: 42 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 102
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DSN3_THECC (G-box binding factor 3, putative isoform 4 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.513e-66 Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948 RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG +E + N ++KEGEMYEK SGAKLHQLLDASPR DA Sbjct: 207 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 350 HSP 2 Score: 85.5001 bits (210), Expect = 1.384e-14 Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V AA VETPTKSSGN+ERG KK+KGFDGLAMSIGNGTAEN EG EPRLSQ Sbjct: 71 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 131
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061E0L4_THECC (G-box binding factor 3, putative isoform 3 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 2.502e-66 Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948 RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG +E + N ++KEGEMYEK SGAKLHQLLDASPR DA Sbjct: 220 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 363 HSP 2 Score: 87.4261 bits (215), Expect = 2.981e-15 Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = -2 Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153 VPT N+HVYPDWAAMQAYYGPRV MPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVP+ + Sbjct: 19 VPT--TNVHVYPDWAAMQAYYGPRVAMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPLAA 95 HSP 3 Score: 85.5001 bits (210), Expect = 1.467e-14 Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V AA VETPTKSSGN+ERG KK+KGFDGLAMSIGNGTAEN EG EPRLSQ Sbjct: 84 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 144
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DUQ2_THECC (G-box binding factor 3, putative isoform 1 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 3.102e-66 Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948 RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG +E + N ++KEGEMYEK SGAKLHQLLDASPR DA Sbjct: 223 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 366 HSP 2 Score: 97.0561 bits (240), Expect = 2.268e-18 Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153 VPTDQ N+HVYPDWAAMQAYYGPRV MPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVP+ + Sbjct: 19 VPTDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPLAA 97 HSP 3 Score: 85.5001 bits (210), Expect = 1.516e-14 Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3 Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363 G Y V AA VETPTKSSGN+ERG KK+KGFDGLAMSIGNGTAEN EG EPRLSQ Sbjct: 86 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 146
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2SHR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105100 PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 2.709e-63 Identity = 119/144 (82.64%), Postives = 124/144 (86.11%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKK--SGAKLHQLLDASPRTDA 948 RN +MNA SS V CGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLT+ENA LRSEINQLTE SEK+RLENA LVE LKNAQLGH QENI NK EDKEGEM EK+ SGAKLHQLLD SPR DA Sbjct: 220 RNTPTMNAMSSAMGVHCGVMPTEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLENAILVEELKNAQLGHAQENILNKKEDKEGEMGEKRSDSGAKLHQLLDPSPRDDA 363 HSP 2 Score: 77.7962 bits (190), Expect = 5.503e-12 Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = -3 Query: 1175 AAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQRF 1330 A PVETPTKS GNTE+G KK+KGFDGLA+SIGNGTAEN EG A+PR S Sbjct: 94 AGPVETPTKSPGNTEQGLMKKLKGFDGLAISIGNGTAENAEGRAKPRPSHSL 145
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2SB11_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105100 PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 5.267e-63 Identity = 119/144 (82.64%), Postives = 124/144 (86.11%), Query Frame = -1 Query: 523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKK--SGAKLHQLLDASPRTDA 948 RN +MNA SS V CGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLT+ENA LRSEINQLTE SEK+RLENA LVE LKNAQLGH QENI NK EDKEGEM EK+ SGAKLHQLLD SPR DA Sbjct: 242 RNTPTMNAMSSAMGVHCGVMPTEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLENAILVEELKNAQLGHAQENILNKKEDKEGEMGEKRSDSGAKLHQLLDPSPRDDA 385 HSP 2 Score: 93.2041 bits (230), Expect = 5.874e-17 Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = -2 Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153 VPTDQ NIHVYPDWAAMQAYYGP V MPPYY+SAVASGHAPPPYMWGP QPMMP YGAPYA IYSHGGVYAHPAVP+ S Sbjct: 19 VPTDQNNIHVYPDWAAMQAYYGPHVNMPPYYSSAVASGHAPPPYMWGPTQPMMPSYGAPYAAIYSHGGVYAHPAVPLAS 97 HSP 3 Score: 77.7962 bits (190), Expect = 6.590e-12 Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = -3 Query: 1175 AAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQRF 1330 A PVETPTKS GNTE+G KK+KGFDGLA+SIGNGTAEN EG A+PR S Sbjct: 109 AGPVETPTKSPGNTEQGLMKKLKGFDGLAISIGNGTAENAEGRAKPRPSHSL 160 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 8
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097479 ID=g.barbadense_cottongen_reftransV1_0097479; Name=g.barbadense_cottongen_reftransV1_0097479; organism=Gossypium barbadense; type=contig; length=2193bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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