g.barbadense_cottongen_reftransV1_0097479, g.barbadense_cottongen_reftransV1_0097479 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097479
Unique Name	g.barbadense_cottongen_reftransV1_0097479
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0097479:12..2193 . Dt08:47135275..47138864 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.939e-35
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = -1

Query:  523 VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQ------------LGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 894
            ++PPE W+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVE+LTAEN  LRSE+NQL EKS+KLR  NATL++ LK ++            + ++     NKN+       +  S +KLHQLLD  PR  A
Sbjct:  247 MVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKLKCSEPEKRVPANMLSRVKNSGAGDKNKNQGDN----DSNSTSKLHQLLDTKPRAKA 378

HSP 2 Score: 76.2554 bits (186), Expect = 2.237e-13
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = -2

Query: 1914 PTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSH-GGVYAHPAVPIVSL 2150
            P DQ N+HVYPDWAAMQAYYGPRV MPPYYNSA+A+   PPP     PQ MM PYGAPYA +Y H GGVYAHP +P+ SL
Sbjct:   21 PVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAVYPHGGGVYAHPGIPMGSL 100

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.041e-35
Identity = 92/176 (52.27%), Postives = 111/176 (63.07%), Query Frame = -1

Query:  523 SSMNAKSSP----TNVPCG------VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQE-NITNKNEDK----------------------EGE--MYEK--KSGAKLHQLLDASPRTDA 939
            SS+  K SP     N P G      +MP + W+ N+R+LKRERRKQSNRESARRSRLRKQAE EELA KV+SLTAEN  L++EIN+LT  +EKL  +N+ L+E +KNAQ     +  + N NE K                      EGE  +YEK  KSGAKLHQLLDA+PRTDA
Sbjct:  232 SSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDNAGSGDRDEGESDVYEKTTKSGAKLHQLLDANPRTDA 407

HSP 2 Score: 76.2554 bits (186), Expect = 3.035e-13
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ+N HVYPDWAAMQAYYGPRV +PPY+N AVASG +P PYMWGPPQP+MPPYG PYA +Y+HGGVYAHP VP+ +
Sbjct:   25 DQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPLAA 100

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.314e-33
Identity = 81/152 (53.29%), Postives = 98/152 (64.47%), Query Frame = -1

Query:  652 SDFSSYLDLCH---DIVDSAEXXXXXXXXXXXXXGLEMVKLRQSLMQLPWQRNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 1092
             D  S+L  C    +I D +E              +    L  S+      RNP+S + K+SPTNV      +P E W+QNERELKRE+RKQSNRESARRSRLRKQAE EELA +V+SLTAEN TL+SEIN+L E SEKL+LENA L+E LK
Sbjct:  111 GDSKSHLRRCQPTGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKASPTNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAALMERLK 262

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.323e-26
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = -1

Query:  526 PEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKL--HQLLDASPRTD 885
            P+ W  NE+E+KRE+RKQSNRESARRSRLRKQAETE+L+ KV++L AEN +LRS++ QL  +SEKLRLEN  +++ LK    G T EN+ ++  DK   +    SG+K   HQLL+ASP TD
Sbjct:  242 PQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATGKT-ENLISR-VDKNNSV----SGSKTVQHQLLNASPITD 355

HSP 2 Score: 55.8398 bits (133), Expect = 7.203e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -2

Query: 2037 DQANIHVYP-DWAAMQAYYGPRVTMPPYYNSAVASGH 2144
            +Q+N+HVY  DWAAMQAYYGPRV +P YYNS +A GH
Sbjct:   23 EQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGH 59

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: EMBP1_WHEAT (DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.803e-17
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = -1

Query:  664 NERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLV 867
            +ERELKRERRKQSNRESARRSRLRKQ E EELA+KV  LTA N TLRSE++QL +  + +  EN  L+
Sbjct:  247 DERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENKKLM 314

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 43/76 (56.58%), Postives = 63/76 (82.89%), Query Frame = -1

Query:  652 VWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 879
            V +++ERELKR++RKQSNRESARRSRLRKQAE E+L ++VESL+ EN +LR E+ +L+ + +KL+ EN ++ + L+
Sbjct:  215 VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQ 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.657e-14
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = -1

Query:  577 VPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNE--DKEGEMYEK 906
            VP G    E W  +ERELK+++RK SNRESARRSRLRKQAE EEL ++ E+L +EN++LR E++++ ++ E+L  +N +L   L  +  G   + + + NE  D  G  ++K
Sbjct:  238 VPSGSARGEQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGGGGGSDAVPDMNERGDTNGGSHQK 347

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.255e-13
Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = -1

Query:  655 SSMNAKSSPTNV--PCGV-----MPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGL 939
             S+  +S+P +V  P  +     M P+  + +ERELKR+RRKQSNRESARRSRLRKQA+++EL  ++++L+ EN  LR  + +++E   ++  EN ++ E L
Sbjct:  162 GSLEVRSNPLDVAAPGAIVVHDGMLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEEL 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A067HEU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014660mg PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.120e-49
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITN------------------------KNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RN   MN K+SPT+VP  C V+PPE W+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV+SL  ENA+L+SEINQL+E SEKLR ENA L+E LK+AQLG+ QE + N                        +N ++ G ++EK   SGAKLHQLLDASPRTDA
Sbjct:  213 RNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 382

HSP 2 Score: 79.7221 bits (195), Expect = 1.437e-12
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP PYMWGP QPMMPPYGAPYA IYS GGVYAHPAVP+ S
Sbjct:   22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGS 97

HSP 3 Score: 64.3142 bits (155), Expect = 1.236e-7
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = -3

Query: 1181 ETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1318
            E PTKSSGN +RG  KK+KG DGLAMSIGN +AE+ EG AE R SQ
Sbjct:  117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQ 162

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: V4TX68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020314mg PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.120e-49
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITN------------------------KNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RN   MN K+SPT+VP  C V+PPE W+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV+SL  ENA+L+SEINQL+E SEKLR ENA L+E LK+AQLG+ QE + N                        +N ++ G ++EK   SGAKLHQLLDASPRTDA
Sbjct:  213 RNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 382

HSP 2 Score: 79.7221 bits (195), Expect = 1.437e-12
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP PYMWGP QPMMPPYGAPYA IYS GGVYAHPAVP+ S
Sbjct:   22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGS 97

HSP 3 Score: 64.3142 bits (155), Expect = 1.236e-7
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = -3

Query: 1181 ETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1318
            E PTKSSGN +RG  KK+KG DGLAMSIGN +AE+ EG AE R SQ
Sbjct:  117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQ 162

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A067H642_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014660mg PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.349e-49
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITN------------------------KNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RN   MN K+SPT+VP  C V+PPE W+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV+SL  ENA+L+SEINQL+E SEKLR ENA L+E LK+AQLG+ QE + N                        +N ++ G ++EK   SGAKLHQLLDASPRTDA
Sbjct:  248 RNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 417

HSP 2 Score: 79.7221 bits (195), Expect = 1.860e-12
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP PYMWGP QPMMPPYGAPYA IYS GGVYAHPAVP+ S
Sbjct:   22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGS 97

HSP 3 Score: 64.3142 bits (155), Expect = 1.356e-7
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = -3

Query: 1181 ETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1318
            E PTKSSGN +RG  KK+KG DGLAMSIGN +AE+ EG AE R SQ
Sbjct:  117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQ 162

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: V4U7K8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020314mg PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.349e-49
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITN------------------------KNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RN   MN K+SPT+VP  C V+PPE W+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV+SL  ENA+L+SEINQL+E SEKLR ENA L+E LK+AQLG+ QE + N                        +N ++ G ++EK   SGAKLHQLLDASPRTDA
Sbjct:  248 RNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 417

HSP 2 Score: 79.7221 bits (195), Expect = 1.860e-12
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP PYMWGP QPMMPPYGAPYA IYS GGVYAHPAVP+ S
Sbjct:   22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGS 97

HSP 3 Score: 64.3142 bits (155), Expect = 1.356e-7
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = -3

Query: 1181 ETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1318
            E PTKSSGN +RG  KK+KG DGLAMSIGN +AE+ EG AE R SQ
Sbjct:  117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQ 162

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A067HEJ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014660mg PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.403e-49
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITN------------------------KNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RN   MN K+SPT+VP  C V+PPE W+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV+SL  ENA+L+SEINQL+E SEKLR ENA L+E LK+AQLG+ QE + N                        +N ++ G ++EK   SGAKLHQLLDASPRTDA
Sbjct:  221 RNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 390

HSP 2 Score: 69.3218 bits (168), Expect = 3.746e-9
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -2

Query: 2037 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGH 2144
            DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGH
Sbjct:   22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57

HSP 3 Score: 64.3142 bits (155), Expect = 1.366e-7
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = -3

Query: 1181 ETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1318
            E PTKSSGN +RG  KK+KG DGLAMSIGN +AE+ EG AE R SQ
Sbjct:   90 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQ 135

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
GBF3_ARATH	3.939e-35	58.82	G-box-binding factor 3 OS=Arabidopsis thaliana GN=...	[more]
CPRF1_PETCR	7.041e-35	52.27	Common plant regulatory factor 1 OS=Petroselinum c...	[more]
TAF1_TOBAC	1.314e-33	53.29	Transcriptional activator TAF-1 (Fragment) OS=Nico...	[more]
GBF2_ARATH	6.323e-26	56.56	G-box-binding factor 2 OS=Arabidopsis thaliana GN=...	[more]
EMBP1_WHEAT	3.803e-17	67.65	DNA-binding protein EMBP-1 OS=Triticum aestivum PE...	[more]
GBF1_ARATH	1.710e-16	56.58	G-box-binding factor 1 OS=Arabidopsis thaliana GN=...	[more]
HBP1A_WHEAT	3.657e-14	43.75	Transcription factor HBP-1a OS=Triticum aestivum P...	[more]
CPRF3_PETCR	3.255e-13	43.14	Light-inducible protein CPRF3 OS=Petroselinum cris...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067HEU0_CITSI	6.120e-49	61.18	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TX68_9ROSI	6.120e-49	61.18	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067H642_CITSI	6.349e-49	61.18	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4U7K8_9ROSI	6.349e-49	61.18	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067HEJ5_CITSI	6.403e-49	61.18	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..184
None	No IPR available	GENE3D	1.20.5.170		coord: 117..182 e-value: 1.3E-19 score: 69.5
None	No IPR available	PANTHER	PTHR22952	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	coord: 60..206
None	No IPR available	PANTHER	PTHR22952:SF144	G-BOX-BINDING FACTOR 2-RELATED	coord: 60..206
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 126..182
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 123..187 e-value: 4.0E-22 score: 89.5
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 123..185 e-value: 2.1E-21 score: 75.7
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 130..145
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 125..188 score: 13.748

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097479 ID=g.barbadense_cottongen_reftransV1_0097479; Name=g.barbadense_cottongen_reftransV1_0097479; organism=Gossypium barbadense; type=contig; length=2193bp
CTGCTATGTTCTTTTTCCTTTTTAATTATCATATATTTGAAAGATGAAGA
TTAGTTTCCAATGCTTTACGAAATATTCCAACATTAACTCCTTTCTCAAG
ACATCCAAGTAAGACATGTTTTGTTCTTTCACACATCACATACAGTCTAA
ATCCCTTTTCAAGGCATTAAAAATTACATCTTATTATTATTATTTAAAGG
TTCTCAATACCCTTTTCCTTAAAACACATTATCTAATTTCTCCTTAATGT
ACATTAACCTTTTTGTTTTTTTCAGGGCTTTCTCAGCACTCTGATTTTTA
AATAAAAAATTACATCAGTTCTGCCATGAGAGAGCTAGCTTACAGTGTCC
CAAACATAGTTTCAATCCCCTAACAAACACCTACTATTTCATCCTTCTGC
TAACTGTTAGCAGTAGTTTTGGGCTTGTAAATGATGCCAAAAGCTACACG
GTTTTGTCCGATTTAAAAATGTCAAAAATAACTCAGGTGTAAACTGTGGC
TACTTACTCAGCTGGCAGCCACAGCATCAGTTCTTGGACTCGCATCCAAG
AGCTGATGCAGCTTGGCACCGGATTTTTTCTCATACATTTCACCCTCTTT
GTCCTCGTTTTTGTTCGTAATGTTTTCCTGTGTATGTCCTAGTTGAGCGT
TTTTGAGTCCCTCCACTAATGTGGCATTTTCTAGCCTTAGTTTCTCCGAT
TTTTCAGTTAGTTGATTTATTTCAGATCTGAGTGTTGCATTCTCTGCAGT
CAAGGATTCAACTTTACGGGCAAGCTCTTCCGTCTCAGCCTGCTTCCTCA
ACCTTGACCTTCTAGCAGATTCTCTATTAGATTGTTTCCTCCTTTCCCGT
TTCAGCTCTCGTTCATTCTGCATCCAGACTTCAGGAGGCATTACTCCACA
AGGTACGTTTGTAGGACTGGATTTAGCATTCATGGAGGAAGGGTTCCTCT
GCCACGGCAACTGCATTAGACTTTGCCTCAGTTTTACCATCTCCAACCCA
GTTGTGTTTCCATCACTACCATCAGTAGAACCTTCAGTCTCCGCACTGTC
CACAATATCATGACATAAGTCAAGATACGAGGAAAAATCACTTGGTTGTG
TAATCTCTGACAAACATATTCCTAAGGCAAAGCTTGATCTTAGAAAAATA
CTATTTTGTTCTGACAAGATTAACAAACCTCTGGGACAGTCTAGGTTCAG
CTGCACCCTCATCATTCTCAGCAGTACCATTGCCTATTGACATAGCAAGG
CCATCAAACCCTTTCATCTTCTTTGTCGAACCTCTTTCTGTATTTCCTGA
TGACTTAGTAGGAGTTTCCACAGGGGCTGCAGTCTGCATTACAATGTTCC
CGTAATATTCACCACATGCTAAACACAATAAGCAAAAAGTAACAACTTCC
CAGCTAATTCATTGAAGCAGTGTACATGCATGTCCATCAACAACAAACAT
GGATGAAAACAGTATAGTAACAGTTTGAAATGAATCATTTAAAAGACGAT
TCACTTGCAGCAGGTGATGATGGAATACCAAGACCATGTTATCCTTGGAT
TTCAAGAGCAAAGAGATAAAAGTGCATCAAGGTATAATATGATACAATAA
AACCAGAGTCCTGGAGTTATTTAGGGCTCAAACCATATCCTGAGGGAGAA
AAAGATGCAAATATTTTTTACTGTGTTTCTAGCTGTACCAATGAGGAATC
TGTAAGTGTTGTCAAGTTGGTAATCGTACAAAAAGACCACCGTCTAAACA
TTCAGCAATAAGAAATAAGAGAATTATGTGACCATACAAGCACCATGCAT
ACTCAAACATCAGAAACTACACATAATTTGTGACCTCTAAAACTGAAAAG
CAAAGTACACTCCTAGATAACTTGGTACAAGATTAATGCAGCAATTAAAC
GATAGTGACAAAGTAAACTTACTATAGGAACTGCAGGATGGGCATAAACT
CCCCCATGTGAGTAGATTGTTGCATAAGGTGCCCCATAAGGTGGCATCAT
AGGCTGTGGAGGACCCCACATATACGGGGGAGGAGCATGGCCAGAGGCCA
CAGCTGAGTTGTAATATGGCGGCATAGTGACTCGAGGACCATAGTATGCC
TGCATAGCAGCCCAATCGGGATAGACGTGAATATTGGCCTGATCCGTTGG
CACTGGTGAAGATGACTTGTCAGACTTAGACTTTCCTTCATCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0043565	sequence-specific DNA binding

Search form

g.barbadense_cottongen_reftransV1_0097479, g.barbadense_cottongen_reftransV1_0097479 (contig) Gossypium barbadense

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